Wall clock time and date at job start Tue Mar 31 2020 10:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86803 * 119.99542 * 2 1 4 4 H 1.48500 * 109.46824 * 272.68413 * 3 2 1 5 5 H 1.48493 * 109.47301 * 32.68951 * 3 2 1 6 6 H 1.48502 * 109.46910 * 152.68962 * 3 2 1 7 7 C 1.40029 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00219 * 348.31577 * 7 2 1 9 9 C 1.41542 * 119.99933 * 168.30852 * 7 2 1 10 10 C 1.41161 * 120.99674 * 146.63489 * 9 7 2 11 11 C 1.36598 * 119.12605 * 180.02562 * 10 9 7 12 12 N 1.32065 * 121.25890 * 0.02562 * 11 10 9 13 13 C 1.32492 * 122.23119 * 359.65426 * 12 11 10 14 14 N 1.39454 * 119.64727 * 180.31737 * 13 12 11 15 15 C 1.34773 * 120.00224 * 6.15152 * 14 13 12 16 16 O 1.21577 * 120.00088 * 4.81540 * 15 14 13 17 17 N 1.34784 * 120.00112 * 184.82373 * 15 14 13 18 18 C 1.46501 * 119.99925 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.46703 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.46658 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.47124 * 180.02562 * 20 19 18 22 22 C 1.34505 * 125.79489 * 89.99568 * 21 20 19 23 23 C 1.41379 * 106.84196 * 180.02562 * 22 21 20 24 24 C 1.34507 * 106.84267 * 359.97438 * 23 22 21 25 25 O 1.34301 * 108.41936 * 359.74317 * 24 23 22 26 26 C 1.38644 * 120.70203 * 0.63966 * 13 12 11 27 27 H 0.96995 * 119.99798 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.43763 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.36777 * 179.97438 * 11 10 9 30 30 H 0.97005 * 120.00072 * 186.14473 * 14 13 12 31 31 H 0.97001 * 119.99627 * 359.97438 * 17 15 14 32 32 H 1.08998 * 109.47247 * 299.99628 * 18 17 15 33 33 H 1.09002 * 109.47100 * 59.99687 * 18 17 15 34 34 H 1.08998 * 109.47448 * 300.00096 * 19 18 17 35 35 H 1.09002 * 109.47115 * 60.00288 * 19 18 17 36 36 H 1.09005 * 109.47031 * 299.99874 * 20 19 18 37 37 H 1.08995 * 109.47719 * 59.99977 * 20 19 18 38 38 H 1.07996 * 126.58148 * 359.96755 * 22 21 20 39 39 H 1.08006 * 126.58319 * 179.97438 * 23 22 21 40 40 H 1.08007 * 125.79374 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.66466 * 179.68039 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4320 2.0793 -1.3986 5 1 1.4684 2.6356 0.7561 6 1 3.5662 1.4246 0.6424 7 6 2.0077 -1.2127 0.0005 8 1 1.4845 -2.1383 0.1904 9 6 3.4011 -1.2254 -0.2478 10 6 4.2426 -2.1696 0.3791 11 6 5.5821 -2.1470 0.1121 12 7 6.1005 -1.2606 -0.7184 13 6 5.3583 -0.3556 -1.3394 14 7 5.9614 0.5511 -2.2106 15 6 7.2689 0.4271 -2.5133 16 8 7.9016 -0.5242 -2.0975 17 7 7.8751 1.3577 -3.2769 18 6 9.2964 1.2232 -3.6054 19 6 9.7321 2.4026 -4.4772 20 6 11.2163 2.2618 -4.8209 21 6 11.6458 3.4238 -5.6790 22 6 12.1309 4.5956 -5.2311 23 6 12.4015 5.3890 -6.3696 24 6 12.0661 4.6543 -7.4452 25 8 11.6146 3.4627 -7.0212 26 6 3.9895 -0.2961 -1.1273 27 1 -0.4849 0.8400 0.0004 28 1 3.8330 -2.8996 1.0614 29 1 6.2296 -2.8673 0.5899 30 1 5.4399 1.2709 -2.5989 31 1 7.3702 2.1165 -3.6089 32 1 9.8825 1.2141 -2.6865 33 1 9.4573 0.2916 -4.1481 34 1 9.1460 2.4113 -5.3962 35 1 9.5712 3.3343 -3.9349 36 1 11.8028 2.2529 -3.9020 37 1 11.3770 1.3302 -5.3633 38 1 12.2835 4.8769 -4.1997 39 1 12.8010 6.3924 -6.3748 40 1 12.1503 4.9676 -8.4754 41 1 3.3859 0.4451 -1.6299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871735704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:16 Heat of formation + Delta-G solvation = 19.493774 kcal Electronic energy + Delta-G solvation = -24264.609530 eV Core-core repulsion = 20532.306258 eV Total energy + Delta-G solvation = -3732.303272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.87929 -40.01483 -38.37822 -36.20452 -34.35681 -33.81259 -33.60880 -32.98147 -31.27967 -29.85608 -28.61778 -26.10190 -25.73754 -22.51800 -22.34533 -22.07794 -21.59967 -20.70546 -20.06498 -18.25955 -17.80425 -17.63188 -16.42885 -16.25330 -15.98893 -15.64138 -15.14903 -14.79603 -14.69811 -14.39053 -14.19052 -13.71433 -13.30375 -13.16334 -13.12749 -13.05816 -12.94737 -12.78685 -12.59752 -12.23833 -11.68828 -11.58710 -11.19496 -10.99669 -10.83229 -10.66930 -10.25220 -10.07715 -9.91396 -9.72159 -9.37866 -8.94121 -8.79045 -8.18714 -7.91022 -7.25362 -7.01811 -4.72594 1.39065 2.27963 2.39563 2.63011 2.63316 2.89630 3.00471 3.12484 3.24206 3.69817 3.89341 4.22528 4.35082 4.54831 4.60872 4.68561 4.74385 4.83783 4.89078 5.19281 5.22325 5.39430 5.47568 5.49967 5.59103 5.68117 5.78588 5.81685 5.88478 6.17092 6.24575 6.35213 6.41503 6.55680 6.56709 6.81040 6.94214 7.03994 7.18913 7.29379 7.66180 7.94071 8.18700 8.23428 8.44613 8.66911 8.98092 9.46840 10.00023 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.002237 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.365802 B =12515.654813 C =13412.831886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.245 1.245 7 C -0.441 4.441 8 H 0.096 0.904 9 C 0.130 3.870 10 C -0.269 4.269 11 C 0.129 3.871 12 N -0.552 5.552 13 C 0.385 3.615 14 N -0.673 5.673 15 C 0.693 3.307 16 O -0.529 6.529 17 N -0.754 5.754 18 C 0.142 3.858 19 C -0.128 4.128 20 C -0.037 4.037 21 C -0.007 4.007 22 C -0.212 4.212 23 C -0.214 4.214 24 C -0.046 4.046 25 O -0.176 6.176 26 C -0.318 4.318 27 H 0.286 0.714 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.404 0.596 31 H 0.392 0.608 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.201 0.799 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.488 11.759 -11.674 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.169 1.169 7 C -0.472 4.472 8 H 0.114 0.886 9 C 0.122 3.878 10 C -0.293 4.293 11 C -0.023 4.023 12 N -0.271 5.271 13 C 0.157 3.843 14 N -0.321 5.321 15 C 0.393 3.607 16 O -0.400 6.400 17 N -0.413 5.413 18 C 0.017 3.983 19 C -0.166 4.166 20 C -0.075 4.075 21 C -0.057 4.057 22 C -0.231 4.231 23 C -0.233 4.233 24 C -0.113 4.113 25 O -0.072 6.072 26 C -0.344 4.344 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.147 0.853 30 H 0.238 0.762 31 H 0.225 0.775 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.218 0.782 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 19.699 10.690 -11.604 25.239 hybrid contribution -1.204 1.932 -0.266 2.292 sum 18.495 12.622 -11.871 25.343 Atomic orbital electron populations 1.69612 1.07988 1.30353 1.35257 1.26151 0.94820 1.01680 0.90839 0.86236 0.81035 0.79567 0.78883 1.19735 1.21837 1.16854 1.19473 0.90608 0.95744 1.41347 0.88640 1.17717 0.93525 0.89204 0.87385 1.21733 0.94259 1.06249 1.07013 1.21640 0.92903 0.94548 0.93204 1.67282 1.38219 1.07757 1.13864 1.17763 0.87816 0.89278 0.89467 1.42640 1.09239 1.32038 1.48153 1.16031 0.81809 0.83186 0.79718 1.91020 1.63369 1.30853 1.54738 1.45166 1.11325 1.27611 1.57150 1.21084 0.80498 0.97837 0.98875 1.21803 0.95085 0.99086 1.00609 1.20037 0.96135 0.93938 0.97371 1.22443 1.04028 0.98477 0.80751 1.21631 1.06879 0.94306 1.00311 1.21855 1.07282 1.01888 0.92293 1.24034 1.03277 0.83868 1.00139 1.84032 1.65990 1.34931 1.22263 1.21234 0.92611 1.09963 1.10561 0.90296 0.87138 0.85308 0.76177 0.77470 0.91407 0.91464 0.90811 0.90694 0.88283 0.89457 0.83448 0.83528 0.78190 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.89 13.92 55.55 0.77 -20.11 16 2 C 0.08 2.15 5.48 -17.34 -0.10 2.06 16 3 Si 0.92 20.08 24.49 -169.99 -4.16 15.91 16 4 H -0.27 -5.55 6.71 56.52 0.38 -5.17 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.25 -5.64 6.70 56.52 0.38 -5.26 16 7 C -0.44 -11.63 9.66 -37.65 -0.36 -12.00 16 8 H 0.10 2.63 8.06 -52.48 -0.42 2.20 16 9 C 0.13 3.28 5.09 -106.55 -0.54 2.73 16 10 C -0.27 -6.28 9.85 -39.07 -0.38 -6.66 16 11 C 0.13 2.93 11.10 -18.04 -0.20 2.73 16 12 N -0.55 -13.48 7.90 -12.76 -0.10 -13.58 16 13 C 0.39 8.89 7.40 -154.68 -1.15 7.74 16 14 N -0.67 -12.50 5.40 -15.86 -0.09 -12.59 16 15 C 0.69 12.56 8.51 -86.91 -0.74 11.82 16 16 O -0.53 -11.91 14.64 5.30 0.08 -11.83 16 17 N -0.75 -9.36 5.56 -65.22 -0.36 -9.73 16 18 C 0.14 1.46 5.67 -4.04 -0.02 1.44 16 19 C -0.13 -0.94 5.31 -26.73 -0.14 -1.08 16 20 C -0.04 -0.25 5.75 -27.88 -0.16 -0.41 16 21 C -0.01 -0.06 6.57 -35.63 -0.23 -0.29 16 22 C -0.21 -1.75 10.81 -39.71 -0.43 -2.18 16 23 C -0.21 -1.62 10.91 -39.71 -0.43 -2.06 16 24 C -0.05 -0.33 12.09 29.41 0.36 0.02 16 25 O -0.18 -1.65 10.65 5.70 0.06 -1.59 16 26 C -0.32 -7.54 6.96 -38.45 -0.27 -7.81 16 27 H 0.29 6.69 8.29 -40.82 -0.34 6.36 16 28 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 30 H 0.40 5.97 8.72 -40.82 -0.36 5.61 16 31 H 0.39 3.66 8.49 -40.82 -0.35 3.31 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.20 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.11 2.45 4.79 -52.49 -0.25 2.20 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -33.71 351.74 -8.51 -42.22 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.21 Total: 9.94 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -4.81 Total: -3.95 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.22 Total: -56.01 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.14 Total: -13.42 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.16 Total: 15.91 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.71 -8.51 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871735704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.718 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds