Wall clock time and date at job start Tue Mar 31 2020 10:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86803 * 119.99542 * 2 1 4 4 H 1.48500 * 109.46824 * 272.68413 * 3 2 1 5 5 H 1.48493 * 109.47301 * 32.68951 * 3 2 1 6 6 H 1.48502 * 109.46910 * 152.68962 * 3 2 1 7 7 C 1.40029 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00219 * 348.31577 * 7 2 1 9 9 C 1.41542 * 119.99933 * 168.30852 * 7 2 1 10 10 C 1.41161 * 120.99674 * 146.63489 * 9 7 2 11 11 C 1.36598 * 119.12605 * 180.02562 * 10 9 7 12 12 N 1.32065 * 121.25890 * 0.02562 * 11 10 9 13 13 C 1.32492 * 122.23119 * 359.65426 * 12 11 10 14 14 N 1.39454 * 119.64727 * 180.31737 * 13 12 11 15 15 C 1.34773 * 120.00224 * 6.15152 * 14 13 12 16 16 O 1.21577 * 120.00088 * 4.81540 * 15 14 13 17 17 N 1.34784 * 120.00112 * 184.82373 * 15 14 13 18 18 C 1.46501 * 119.99925 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.46703 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.46658 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.47124 * 180.02562 * 20 19 18 22 22 C 1.34505 * 125.79489 * 89.99568 * 21 20 19 23 23 C 1.41379 * 106.84196 * 180.02562 * 22 21 20 24 24 C 1.34507 * 106.84267 * 359.97438 * 23 22 21 25 25 O 1.34301 * 108.41936 * 359.74317 * 24 23 22 26 26 C 1.38644 * 120.70203 * 0.63966 * 13 12 11 27 27 H 0.96995 * 119.99798 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.43763 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.36777 * 179.97438 * 11 10 9 30 30 H 0.97005 * 120.00072 * 186.14473 * 14 13 12 31 31 H 0.97001 * 119.99627 * 359.97438 * 17 15 14 32 32 H 1.08998 * 109.47247 * 299.99628 * 18 17 15 33 33 H 1.09002 * 109.47100 * 59.99687 * 18 17 15 34 34 H 1.08998 * 109.47448 * 300.00096 * 19 18 17 35 35 H 1.09002 * 109.47115 * 60.00288 * 19 18 17 36 36 H 1.09005 * 109.47031 * 299.99874 * 20 19 18 37 37 H 1.08995 * 109.47719 * 59.99977 * 20 19 18 38 38 H 1.07996 * 126.58148 * 359.96755 * 22 21 20 39 39 H 1.08006 * 126.58319 * 179.97438 * 23 22 21 40 40 H 1.08007 * 125.79374 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.66466 * 179.68039 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4320 2.0793 -1.3986 5 1 1.4684 2.6356 0.7561 6 1 3.5662 1.4246 0.6424 7 6 2.0077 -1.2127 0.0005 8 1 1.4845 -2.1383 0.1904 9 6 3.4011 -1.2254 -0.2478 10 6 4.2426 -2.1696 0.3791 11 6 5.5821 -2.1470 0.1121 12 7 6.1005 -1.2606 -0.7184 13 6 5.3583 -0.3556 -1.3394 14 7 5.9614 0.5511 -2.2106 15 6 7.2689 0.4271 -2.5133 16 8 7.9016 -0.5242 -2.0975 17 7 7.8751 1.3577 -3.2769 18 6 9.2964 1.2232 -3.6054 19 6 9.7321 2.4026 -4.4772 20 6 11.2163 2.2618 -4.8209 21 6 11.6458 3.4238 -5.6790 22 6 12.1309 4.5956 -5.2311 23 6 12.4015 5.3890 -6.3696 24 6 12.0661 4.6543 -7.4452 25 8 11.6146 3.4627 -7.0212 26 6 3.9895 -0.2961 -1.1273 27 1 -0.4849 0.8400 0.0004 28 1 3.8330 -2.8996 1.0614 29 1 6.2296 -2.8673 0.5899 30 1 5.4399 1.2709 -2.5989 31 1 7.3702 2.1165 -3.6089 32 1 9.8825 1.2141 -2.6865 33 1 9.4573 0.2916 -4.1481 34 1 9.1460 2.4113 -5.3962 35 1 9.5712 3.3343 -3.9349 36 1 11.8028 2.2529 -3.9020 37 1 11.3770 1.3302 -5.3633 38 1 12.2835 4.8769 -4.1997 39 1 12.8010 6.3924 -6.3748 40 1 12.1503 4.9676 -8.4754 41 1 3.3859 0.4451 -1.6299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871735704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:16 Heat of formation + Delta-G solvation = -2.786328 kcal Electronic energy + Delta-G solvation = -24265.575667 eV Core-core repulsion = 20532.306258 eV Total energy + Delta-G solvation = -3733.269409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.44685 -41.53816 -40.02456 -37.16004 -36.04877 -35.53882 -34.51660 -33.65221 -33.16724 -31.01899 -29.85457 -27.91739 -26.62544 -24.16171 -23.65733 -22.74056 -22.63472 -21.75878 -21.19088 -19.76129 -19.42510 -18.29330 -17.96395 -17.30570 -16.93115 -16.90739 -16.45628 -16.25907 -15.98952 -15.91056 -15.40048 -14.98478 -14.82024 -14.73048 -14.54356 -13.90167 -13.71316 -13.58339 -13.45464 -13.36183 -12.96512 -12.76190 -12.63211 -12.59223 -12.36002 -11.86170 -11.79698 -11.55719 -11.38298 -11.16633 -10.82507 -10.12849 -10.05747 -9.72178 -9.34700 -8.97420 -8.91559 -6.71570 0.60631 0.77240 0.82115 1.24477 1.40275 1.48976 1.54106 1.74608 2.11141 2.16462 2.21451 2.72077 3.12289 3.53066 3.67065 3.98337 4.00665 4.15327 4.17677 4.23783 4.30609 4.45719 4.56085 4.61538 4.63861 4.67232 4.77249 4.80985 4.96988 5.00575 5.13995 5.16487 5.17822 5.28511 5.31176 5.49971 5.53083 5.64925 5.69834 5.86223 6.12805 6.25016 6.29585 6.53191 6.70550 6.92125 7.52704 7.75965 8.14628 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.002237 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.365802 B =12515.654813 C =13412.831886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.050 3.950 3 Si 0.968 3.032 4 H -0.243 1.243 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.472 4.472 8 H 0.065 0.935 9 C 0.115 3.885 10 C -0.279 4.279 11 C 0.129 3.871 12 N -0.570 5.570 13 C 0.383 3.617 14 N -0.665 5.665 15 C 0.690 3.310 16 O -0.576 6.576 17 N -0.731 5.731 18 C 0.141 3.859 19 C -0.111 4.111 20 C -0.035 4.035 21 C -0.023 4.023 22 C -0.223 4.223 23 C -0.230 4.230 24 C -0.049 4.049 25 O -0.195 6.195 26 C -0.322 4.322 27 H 0.297 0.703 28 H 0.121 0.879 29 H 0.160 0.840 30 H 0.422 0.578 31 H 0.411 0.589 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.232 0.768 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.168 14.023 -12.885 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.167 4.167 3 Si 0.791 3.209 4 H -0.167 1.167 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.503 4.503 8 H 0.083 0.917 9 C 0.107 3.893 10 C -0.303 4.303 11 C -0.023 4.023 12 N -0.290 5.290 13 C 0.153 3.847 14 N -0.314 5.314 15 C 0.390 3.610 16 O -0.450 6.450 17 N -0.389 5.389 18 C 0.017 3.983 19 C -0.149 4.149 20 C -0.072 4.072 21 C -0.073 4.073 22 C -0.242 4.242 23 C -0.248 4.248 24 C -0.116 4.116 25 O -0.092 6.092 26 C -0.347 4.347 27 H 0.108 0.892 28 H 0.140 0.860 29 H 0.177 0.823 30 H 0.260 0.740 31 H 0.247 0.753 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.176 0.824 39 H 0.181 0.819 40 H 0.248 0.752 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 21.368 13.016 -12.873 28.137 hybrid contribution -1.605 1.188 0.066 1.998 sum 19.763 14.204 -12.806 27.502 Atomic orbital electron populations 1.69633 1.09064 1.31793 1.36238 1.26841 0.95470 1.04218 0.90131 0.85451 0.78908 0.76188 0.80351 1.16738 1.20486 1.18612 1.19446 0.91513 0.95408 1.43892 0.91660 1.17907 0.93252 0.90306 0.87876 1.21926 0.94636 1.06356 1.07360 1.22113 0.93030 0.94553 0.92573 1.67423 1.38904 1.08333 1.14318 1.17967 0.87822 0.89409 0.89539 1.42526 1.09822 1.31734 1.47363 1.16215 0.81373 0.83489 0.79929 1.90989 1.64229 1.33035 1.56752 1.45002 1.12108 1.26646 1.55153 1.21220 0.78979 0.98961 0.99135 1.21652 0.95379 0.97891 1.00014 1.20049 0.95828 0.93602 0.97740 1.22693 1.04779 0.99080 0.80747 1.21931 1.06684 0.94450 1.01174 1.22188 1.07610 1.02803 0.92247 1.24721 1.02213 0.83075 1.01609 1.84024 1.66490 1.35972 1.22735 1.21307 0.93159 1.09934 1.10345 0.89231 0.86049 0.82322 0.74018 0.75264 0.91863 0.92228 0.90588 0.89790 0.87094 0.89306 0.82408 0.81880 0.75221 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.00 13.92 21.84 0.30 -43.70 16 2 C 0.05 2.54 5.48 85.29 0.47 3.00 16 3 Si 0.97 40.25 24.49 68.60 1.68 41.93 16 4 H -0.24 -8.93 6.71 99.48 0.67 -8.26 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 6 H -0.26 -11.56 6.70 99.48 0.67 -10.89 16 7 C -0.47 -25.56 9.66 23.52 0.23 -25.34 16 8 H 0.07 3.80 8.06 -2.91 -0.02 3.77 16 9 C 0.12 5.82 5.09 -21.11 -0.11 5.71 16 10 C -0.28 -13.04 9.85 22.60 0.22 -12.82 16 11 C 0.13 5.75 11.10 84.27 0.94 6.68 16 12 N -0.57 -27.23 7.90 -194.27 -1.53 -28.76 16 13 C 0.38 17.12 7.40 132.76 0.98 18.10 16 14 N -0.66 -23.28 5.40 -322.37 -1.74 -25.01 16 15 C 0.69 23.73 8.51 179.05 1.52 25.26 16 16 O -0.58 -25.31 14.64 -3.96 -0.06 -25.37 16 17 N -0.73 -16.30 5.56 -478.53 -2.66 -18.96 16 18 C 0.14 2.62 5.67 86.38 0.49 3.11 16 19 C -0.11 -1.36 5.31 30.59 0.16 -1.20 16 20 C -0.03 -0.41 5.75 29.85 0.17 -0.24 16 21 C -0.02 -0.36 6.57 24.83 0.16 -0.20 16 22 C -0.22 -3.30 10.81 22.19 0.24 -3.06 16 23 C -0.23 -3.05 10.91 22.19 0.24 -2.81 16 24 C -0.05 -0.62 12.09 66.97 0.81 0.18 16 25 O -0.20 -3.38 10.65 -2.50 -0.03 -3.40 16 26 C -0.32 -14.94 6.96 23.00 0.16 -14.78 16 27 H 0.30 13.85 8.29 -92.71 -0.77 13.08 16 28 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 29 H 0.16 5.94 8.06 -2.91 -0.02 5.92 16 30 H 0.42 11.21 8.72 -92.70 -0.81 10.40 16 31 H 0.41 6.27 8.49 -92.71 -0.79 5.48 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 39 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.23 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.12 5.15 4.79 -2.91 -0.01 5.14 16 Total: -1.00 -73.44 351.74 2.06 -71.38 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: -0.59 Total: 30.28 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 6.69 Total: 1.62 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -5.63 Total: -116.43 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.08 Total: -28.77 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.68 Total: 41.93 kcal Total: -73.44 2.06 -71.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871735704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.590 kcal (2) G-P(sol) polarization free energy of solvation -73.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds