Wall clock time and date at job start Tue Mar 31 2020 10:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86800 * 120.00342 * 2 1 4 4 H 1.48500 * 109.47385 * 89.99938 * 3 2 1 5 5 H 1.48508 * 109.46768 * 210.00286 * 3 2 1 6 6 H 1.48500 * 109.46927 * 329.99405 * 3 2 1 7 7 C 1.40034 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00210 * 15.96307 * 7 2 1 9 9 C 1.41333 * 119.99627 * 195.95707 * 7 2 1 10 10 C 1.40611 * 119.78543 * 188.65425 * 9 7 2 11 11 C 1.38311 * 119.13059 * 179.74925 * 10 9 7 12 12 C 1.38685 * 118.66784 * 0.52322 * 11 10 9 13 13 C 1.39640 * 119.49838 * 359.74958 * 12 11 10 14 14 N 1.39252 * 119.57380 * 180.02562 * 13 12 11 15 15 C 1.34776 * 120.00632 * 18.77725 * 14 13 12 16 16 O 1.21581 * 119.99445 * 5.79267 * 15 14 13 17 17 N 1.34774 * 120.00137 * 185.79469 * 15 14 13 18 18 C 1.46499 * 119.99630 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.47102 * 179.97438 * 18 17 15 20 20 C 1.52992 * 109.47402 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47544 * 180.02562 * 20 19 18 22 22 C 1.34512 * 125.79174 * 90.00081 * 21 20 19 23 23 C 1.41383 * 106.84428 * 180.02562 * 22 21 20 24 24 C 1.34515 * 106.83813 * 0.02562 * 23 22 21 25 25 O 1.34299 * 108.42013 * 359.73527 * 24 23 22 26 26 N 1.31930 * 120.85169 * 359.96951 * 13 12 11 27 27 H 0.97003 * 120.00502 * 174.93515 * 1 2 3 28 28 H 1.08005 * 120.43641 * 0.02968 * 10 9 7 29 29 H 1.08004 * 120.66704 * 180.24596 * 11 10 9 30 30 H 1.08007 * 120.25430 * 179.76241 * 12 11 10 31 31 H 0.97008 * 119.99807 * 198.77692 * 14 13 12 32 32 H 0.96997 * 119.99789 * 359.97438 * 17 15 14 33 33 H 1.08993 * 109.47181 * 299.99828 * 18 17 15 34 34 H 1.09001 * 109.47572 * 59.99988 * 18 17 15 35 35 H 1.08996 * 109.47241 * 300.00741 * 19 18 17 36 36 H 1.09001 * 109.46462 * 59.99864 * 19 18 17 37 37 H 1.09001 * 109.47663 * 300.01178 * 20 19 18 38 38 H 1.09012 * 109.46789 * 60.00321 * 20 19 18 39 39 H 1.07999 * 126.57589 * 359.96832 * 22 21 20 40 40 H 1.08001 * 126.57881 * 179.97438 * 23 22 21 41 41 H 1.08000 * 125.78934 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0464 1.4000 5 1 3.5390 1.4400 -0.7002 6 1 1.4390 2.6526 -0.7002 7 6 2.0074 -1.2128 0.0005 8 1 1.4986 -2.1302 -0.2563 9 6 3.3799 -1.2362 0.3371 10 6 4.1220 -2.4176 0.1615 11 6 5.4655 -2.4239 0.4903 12 6 6.0326 -1.2628 0.9939 13 6 5.2413 -0.1230 1.1507 14 7 5.8093 1.0438 1.6558 15 6 7.1472 1.2055 1.6361 16 8 7.8508 0.3822 1.0835 17 7 7.7050 2.2797 2.2289 18 6 9.1593 2.4550 2.2079 19 6 9.5282 3.7443 2.9446 20 6 11.0470 3.9271 2.9233 21 6 11.4105 5.1966 3.6494 22 6 11.6805 5.3018 4.9630 23 6 11.9686 6.6630 5.2142 24 6 11.8570 7.3082 4.0392 25 8 11.5241 6.4142 3.0940 26 7 3.9628 -0.1370 0.8255 27 1 -0.4851 -0.8368 -0.0742 28 1 3.6503 -3.3071 -0.2292 29 1 6.0599 -3.3164 0.3617 30 1 7.0785 -1.2402 1.2627 31 1 5.2419 1.7404 2.0218 32 1 7.1435 2.9366 2.6694 33 1 9.6347 1.6064 2.6996 34 1 9.5031 2.5159 1.1753 35 1 9.0527 4.5927 2.4526 36 1 9.1843 3.6837 3.9772 37 1 11.5222 3.0786 3.4155 38 1 11.3912 3.9875 1.8907 39 1 11.6768 4.5004 5.6869 40 1 12.2278 7.1008 6.1669 41 1 12.0127 8.3653 3.8819 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:54 Heat of formation + Delta-G solvation = 7.663095 kcal Electronic energy + Delta-G solvation = -24402.784974 eV Core-core repulsion = 20669.968685 eV Total energy + Delta-G solvation = -3732.816288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.88789 -40.29533 -38.34940 -36.33718 -34.48303 -33.86970 -33.42119 -33.00770 -31.02967 -30.01197 -28.96878 -26.03394 -25.22719 -22.75584 -22.08959 -21.90541 -21.64991 -20.74864 -20.18579 -18.63333 -17.85355 -17.70933 -16.95209 -16.29475 -16.10068 -15.52802 -15.04888 -14.94062 -14.82572 -14.34700 -14.00199 -13.75725 -13.28323 -13.17031 -13.08288 -13.01677 -12.80227 -12.53533 -12.30454 -12.19192 -11.84568 -11.72434 -11.24654 -11.18835 -10.85462 -10.29944 -10.25912 -9.96462 -9.75284 -9.39630 -9.09491 -9.02750 -8.79887 -8.47649 -7.87539 -7.34718 -7.24041 -4.72357 1.38032 2.26790 2.42664 2.60459 2.71768 2.79509 3.42487 3.48286 3.65346 3.91405 4.20140 4.29423 4.35186 4.52034 4.63645 4.67251 4.71419 4.80089 4.85904 5.15144 5.18580 5.43814 5.48253 5.56836 5.58061 5.75225 5.76429 5.80596 5.89604 6.13095 6.16101 6.33765 6.46653 6.58635 6.71123 6.80122 6.92735 7.21366 7.37191 7.47259 7.66635 7.80657 7.94571 8.23170 8.37053 8.66905 8.77689 9.48382 10.00170 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.002343 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.617134 B =11949.649471 C =12950.982880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.049 3.951 3 Si 1.144 2.856 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.327 1.327 7 C -0.483 4.483 8 H 0.083 0.917 9 C 0.276 3.724 10 C -0.280 4.280 11 C -0.036 4.036 12 C -0.310 4.310 13 C 0.400 3.600 14 N -0.667 5.667 15 C 0.709 3.291 16 O -0.564 6.564 17 N -0.747 5.747 18 C 0.140 3.860 19 C -0.129 4.129 20 C -0.037 4.037 21 C -0.008 4.008 22 C -0.212 4.212 23 C -0.214 4.214 24 C -0.045 4.045 25 O -0.176 6.176 26 N -0.597 5.597 27 H 0.284 0.716 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.141 0.859 31 H 0.403 0.597 32 H 0.397 0.603 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.358 12.782 9.163 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.173 4.173 3 Si 0.978 3.022 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.260 1.260 7 C -0.515 4.515 8 H 0.101 0.899 9 C 0.152 3.848 10 C -0.303 4.303 11 C -0.061 4.061 12 C -0.335 4.335 13 C 0.168 3.832 14 N -0.314 5.314 15 C 0.409 3.591 16 O -0.440 6.440 17 N -0.404 5.404 18 C 0.016 3.984 19 C -0.167 4.167 20 C -0.074 4.074 21 C -0.058 4.058 22 C -0.231 4.231 23 C -0.233 4.233 24 C -0.112 4.112 25 O -0.072 6.072 26 N -0.322 5.322 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.158 0.842 31 H 0.238 0.762 32 H 0.231 0.769 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 20.197 14.335 8.533 26.195 hybrid contribution -0.018 -1.780 0.584 1.874 sum 20.179 12.554 9.117 25.454 Atomic orbital electron populations 1.70612 1.08261 1.32996 1.30862 1.27648 0.95228 1.05956 0.88453 0.82121 0.72767 0.70053 0.77306 1.21603 1.20717 1.26015 1.20643 0.93157 0.96960 1.40720 0.89856 1.18171 0.92910 0.85999 0.87745 1.21597 0.94686 0.99809 1.14185 1.20915 0.94310 0.96316 0.94518 1.21538 1.01962 0.92743 1.17225 1.17784 0.89520 0.83841 0.92071 1.42324 1.05563 1.20352 1.63172 1.15700 0.81696 0.82124 0.79595 1.90854 1.61312 1.43334 1.48492 1.45079 1.08037 1.26041 1.61258 1.21145 0.79272 0.96928 1.01088 1.21810 0.95007 0.97956 1.01920 1.20025 0.95986 0.90225 1.01205 1.22422 1.04806 0.85653 0.92907 1.21633 1.08013 0.97731 0.95696 1.21859 1.07845 0.94242 0.99397 1.24039 1.05083 0.95218 0.86895 1.84031 1.68211 1.16779 1.38172 1.66130 1.10185 1.30328 1.25566 0.90486 0.87771 0.87710 0.84215 0.76225 0.76937 0.91190 0.91234 0.90666 0.90574 0.88284 0.89448 0.83445 0.83519 0.78179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.93 13.65 55.55 0.76 -21.17 16 2 C 0.05 1.33 5.51 -17.35 -0.10 1.23 16 3 Si 1.14 27.75 25.93 -169.99 -4.41 23.34 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -7.00 6.55 56.52 0.37 -6.63 16 6 H -0.33 -7.81 7.11 56.52 0.40 -7.40 16 7 C -0.48 -13.25 9.51 -37.73 -0.36 -13.61 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.28 7.35 6.27 -85.00 -0.53 6.82 16 10 C -0.28 -6.81 9.83 -38.66 -0.38 -7.19 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.31 -7.15 8.83 -38.89 -0.34 -7.49 16 13 C 0.40 9.33 7.51 -154.98 -1.16 8.17 16 14 N -0.67 -12.49 5.42 -15.79 -0.09 -12.58 16 15 C 0.71 12.06 8.40 -86.92 -0.73 11.33 16 16 O -0.56 -11.47 13.14 5.29 0.07 -11.40 16 17 N -0.75 -8.65 5.56 -65.23 -0.36 -9.02 16 18 C 0.14 1.30 5.67 -4.04 -0.02 1.28 16 19 C -0.13 -0.86 5.31 -26.73 -0.14 -1.00 16 20 C -0.04 -0.23 5.75 -27.89 -0.16 -0.39 16 21 C -0.01 -0.06 6.58 -35.63 -0.23 -0.30 16 22 C -0.21 -1.68 10.81 -39.70 -0.43 -2.11 16 23 C -0.21 -1.58 10.91 -39.70 -0.43 -2.01 16 24 C -0.04 -0.32 12.09 29.42 0.36 0.04 16 25 O -0.18 -1.61 10.65 5.72 0.06 -1.55 16 26 N -0.60 -15.29 5.07 -10.26 -0.05 -15.35 16 27 H 0.28 7.40 8.73 -40.82 -0.36 7.05 16 28 H 0.10 2.36 8.06 -52.48 -0.42 1.93 16 29 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 30 H 0.14 3.17 5.33 -52.50 -0.28 2.89 16 31 H 0.40 6.51 8.84 -40.82 -0.36 6.15 16 32 H 0.40 3.50 8.49 -40.82 -0.35 3.16 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.20 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -33.49 351.90 -9.03 -42.52 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.24 Total: 6.33 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -5.07 Total: -6.45 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.26 Total: -58.11 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.13 Total: -12.95 kcal Atomic # 14 Polarization: 27.75 SS G_CDS: -4.41 Total: 23.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.49 -9.03 -42.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.186 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds