Wall clock time and date at job start Tue Mar 31 2020 10:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86800 * 120.00342 * 2 1 4 4 H 1.48500 * 109.47385 * 89.99938 * 3 2 1 5 5 H 1.48508 * 109.46768 * 210.00286 * 3 2 1 6 6 H 1.48500 * 109.46927 * 329.99405 * 3 2 1 7 7 C 1.40034 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00210 * 15.96307 * 7 2 1 9 9 C 1.41333 * 119.99627 * 195.95707 * 7 2 1 10 10 C 1.40611 * 119.78543 * 188.65425 * 9 7 2 11 11 C 1.38311 * 119.13059 * 179.74925 * 10 9 7 12 12 C 1.38685 * 118.66784 * 0.52322 * 11 10 9 13 13 C 1.39640 * 119.49838 * 359.74958 * 12 11 10 14 14 N 1.39252 * 119.57380 * 180.02562 * 13 12 11 15 15 C 1.34776 * 120.00632 * 18.77725 * 14 13 12 16 16 O 1.21581 * 119.99445 * 5.79267 * 15 14 13 17 17 N 1.34774 * 120.00137 * 185.79469 * 15 14 13 18 18 C 1.46499 * 119.99630 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.47102 * 179.97438 * 18 17 15 20 20 C 1.52992 * 109.47402 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47544 * 180.02562 * 20 19 18 22 22 C 1.34512 * 125.79174 * 90.00081 * 21 20 19 23 23 C 1.41383 * 106.84428 * 180.02562 * 22 21 20 24 24 C 1.34515 * 106.83813 * 0.02562 * 23 22 21 25 25 O 1.34299 * 108.42013 * 359.73527 * 24 23 22 26 26 N 1.31930 * 120.85169 * 359.96951 * 13 12 11 27 27 H 0.97003 * 120.00502 * 174.93515 * 1 2 3 28 28 H 1.08005 * 120.43641 * 0.02968 * 10 9 7 29 29 H 1.08004 * 120.66704 * 180.24596 * 11 10 9 30 30 H 1.08007 * 120.25430 * 179.76241 * 12 11 10 31 31 H 0.97008 * 119.99807 * 198.77692 * 14 13 12 32 32 H 0.96997 * 119.99789 * 359.97438 * 17 15 14 33 33 H 1.08993 * 109.47181 * 299.99828 * 18 17 15 34 34 H 1.09001 * 109.47572 * 59.99988 * 18 17 15 35 35 H 1.08996 * 109.47241 * 300.00741 * 19 18 17 36 36 H 1.09001 * 109.46462 * 59.99864 * 19 18 17 37 37 H 1.09001 * 109.47663 * 300.01178 * 20 19 18 38 38 H 1.09012 * 109.46789 * 60.00321 * 20 19 18 39 39 H 1.07999 * 126.57589 * 359.96832 * 22 21 20 40 40 H 1.08001 * 126.57881 * 179.97438 * 23 22 21 41 41 H 1.08000 * 125.78934 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0464 1.4000 5 1 3.5390 1.4400 -0.7002 6 1 1.4390 2.6526 -0.7002 7 6 2.0074 -1.2128 0.0005 8 1 1.4986 -2.1302 -0.2563 9 6 3.3799 -1.2362 0.3371 10 6 4.1220 -2.4176 0.1615 11 6 5.4655 -2.4239 0.4903 12 6 6.0326 -1.2628 0.9939 13 6 5.2413 -0.1230 1.1507 14 7 5.8093 1.0438 1.6558 15 6 7.1472 1.2055 1.6361 16 8 7.8508 0.3822 1.0835 17 7 7.7050 2.2797 2.2289 18 6 9.1593 2.4550 2.2079 19 6 9.5282 3.7443 2.9446 20 6 11.0470 3.9271 2.9233 21 6 11.4105 5.1966 3.6494 22 6 11.6805 5.3018 4.9630 23 6 11.9686 6.6630 5.2142 24 6 11.8570 7.3082 4.0392 25 8 11.5241 6.4142 3.0940 26 7 3.9628 -0.1370 0.8255 27 1 -0.4851 -0.8368 -0.0742 28 1 3.6503 -3.3071 -0.2292 29 1 6.0599 -3.3164 0.3617 30 1 7.0785 -1.2402 1.2627 31 1 5.2419 1.7404 2.0218 32 1 7.1435 2.9366 2.6694 33 1 9.6347 1.6064 2.6996 34 1 9.5031 2.5159 1.1753 35 1 9.0527 4.5927 2.4526 36 1 9.1843 3.6837 3.9772 37 1 11.5222 3.0786 3.4155 38 1 11.3912 3.9875 1.8907 39 1 11.6768 4.5004 5.6869 40 1 12.2278 7.1008 6.1669 41 1 12.0127 8.3653 3.8819 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:53 Heat of formation + Delta-G solvation = -13.342794 kcal Electronic energy + Delta-G solvation = -24403.695857 eV Core-core repulsion = 20669.968685 eV Total energy + Delta-G solvation = -3733.727172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.43495 -41.76882 -40.05634 -37.26247 -36.14390 -35.38135 -34.56634 -33.65299 -32.91707 -31.40200 -30.05487 -27.30963 -26.63767 -24.05573 -23.52843 -22.78584 -22.62758 -21.84752 -21.18377 -20.44910 -19.38720 -18.57399 -18.15884 -17.17932 -16.90479 -16.86240 -16.60776 -16.24325 -16.06292 -15.73438 -15.35468 -15.09233 -14.82033 -14.43453 -14.21475 -13.93662 -13.70453 -13.69823 -13.56987 -13.35605 -13.01053 -12.92667 -12.73404 -12.36045 -12.14899 -11.84961 -11.77376 -11.57120 -11.05669 -10.95850 -10.81286 -10.36449 -10.17010 -9.81177 -9.33636 -9.29721 -9.12503 -6.76932 0.61985 0.81181 0.83103 1.41845 1.53684 1.67338 1.75106 1.99033 2.04775 2.17688 2.41796 2.67010 3.08058 3.61290 3.67446 4.00756 4.10449 4.16010 4.17741 4.24480 4.31656 4.43655 4.57252 4.64755 4.68306 4.73496 4.80390 4.85638 4.98196 5.01482 5.17573 5.19055 5.29293 5.37328 5.41001 5.44131 5.48133 5.66072 5.71608 5.81605 5.95728 6.07937 6.26163 6.44614 6.64992 6.87736 7.40978 7.57829 7.95152 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.002343 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.617134 B =11949.649471 C =12950.982880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.021 3.979 3 Si 1.176 2.824 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.322 1.322 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.259 3.741 10 C -0.297 4.297 11 C -0.030 4.030 12 C -0.307 4.307 13 C 0.391 3.609 14 N -0.664 5.664 15 C 0.707 3.293 16 O -0.598 6.598 17 N -0.724 5.724 18 C 0.139 3.861 19 C -0.114 4.114 20 C -0.034 4.034 21 C -0.024 4.024 22 C -0.223 4.223 23 C -0.230 4.230 24 C -0.050 4.050 25 O -0.196 6.196 26 N -0.609 5.609 27 H 0.281 0.719 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.415 0.585 32 H 0.413 0.587 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.654 14.070 10.351 28.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.197 4.197 3 Si 1.007 2.993 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.255 1.255 7 C -0.546 4.546 8 H 0.086 0.914 9 C 0.134 3.866 10 C -0.319 4.319 11 C -0.054 4.054 12 C -0.332 4.332 13 C 0.158 3.842 14 N -0.312 5.312 15 C 0.407 3.593 16 O -0.476 6.476 17 N -0.381 5.381 18 C 0.015 3.985 19 C -0.152 4.152 20 C -0.072 4.072 21 C -0.073 4.073 22 C -0.242 4.242 23 C -0.249 4.249 24 C -0.117 4.117 25 O -0.093 6.093 26 N -0.334 5.334 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.160 0.840 30 H 0.167 0.833 31 H 0.252 0.748 32 H 0.250 0.750 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.177 0.823 40 H 0.181 0.819 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 22.508 15.677 9.771 29.118 hybrid contribution -0.482 -2.185 0.277 2.255 sum 22.026 13.492 10.047 27.715 Atomic orbital electron populations 1.70634 1.08503 1.32890 1.32868 1.28441 0.95496 1.07746 0.88001 0.81700 0.71366 0.68259 0.78010 1.19758 1.22075 1.25459 1.20637 0.94121 0.96722 1.43118 0.91363 1.18363 0.92978 0.87322 0.87936 1.21762 0.95616 0.99573 1.14938 1.21317 0.93755 0.97537 0.92776 1.21874 1.02360 0.92863 1.16089 1.18103 0.88968 0.85567 0.91556 1.42264 1.06495 1.19485 1.62995 1.15855 0.80819 0.82961 0.79619 1.90816 1.61727 1.44993 1.50099 1.44989 1.09216 1.24477 1.59394 1.21315 0.77507 0.98386 1.01272 1.21671 0.95361 0.96263 1.01907 1.20053 0.95610 0.90072 1.01424 1.22726 1.05418 0.85921 0.93269 1.21937 1.07837 0.98471 0.95980 1.22193 1.08077 0.94279 1.00341 1.24708 1.04138 0.96289 0.86558 1.84023 1.68664 1.17421 1.39143 1.66118 1.11320 1.30170 1.25809 0.90763 0.86844 0.84010 0.83345 0.74801 0.74999 0.91014 0.91808 0.90722 0.89705 0.86871 0.89261 0.82321 0.81935 0.75321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.82 13.65 21.84 0.30 -45.52 16 2 C 0.02 1.13 5.51 85.29 0.47 1.60 16 3 Si 1.18 56.03 25.93 68.60 1.78 57.80 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -14.43 6.55 99.48 0.65 -13.78 16 6 H -0.32 -14.89 7.11 99.48 0.71 -14.19 16 7 C -0.51 -28.87 9.51 23.47 0.22 -28.65 16 8 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 9 C 0.26 13.84 6.27 40.20 0.25 14.09 16 10 C -0.30 -14.22 9.83 22.87 0.22 -13.99 16 11 C -0.03 -1.26 10.15 22.39 0.23 -1.04 16 12 C -0.31 -13.56 8.83 22.72 0.20 -13.36 16 13 C 0.39 17.64 7.51 133.24 1.00 18.64 16 14 N -0.66 -23.50 5.42 -322.13 -1.75 -25.24 16 15 C 0.71 22.46 8.40 179.06 1.50 23.97 16 16 O -0.60 -23.12 13.14 -3.97 -0.05 -23.17 16 17 N -0.72 -14.78 5.56 -478.54 -2.66 -17.44 16 18 C 0.14 2.23 5.67 86.38 0.49 2.72 16 19 C -0.11 -1.23 5.31 30.59 0.16 -1.06 16 20 C -0.03 -0.36 5.75 29.84 0.17 -0.18 16 21 C -0.02 -0.35 6.58 24.83 0.16 -0.19 16 22 C -0.22 -3.15 10.81 22.19 0.24 -2.91 16 23 C -0.23 -2.98 10.91 22.19 0.24 -2.74 16 24 C -0.05 -0.62 12.09 66.97 0.81 0.19 16 25 O -0.20 -3.30 10.65 -2.46 -0.03 -3.33 16 26 N -0.61 -30.71 5.07 -186.37 -0.95 -31.66 16 27 H 0.28 15.16 8.73 -92.71 -0.81 14.35 16 28 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 29 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 30 H 0.15 6.39 5.33 -3.18 -0.02 6.37 16 31 H 0.42 12.44 8.84 -92.70 -0.82 11.62 16 32 H 0.41 5.96 8.49 -92.71 -0.79 5.18 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.23 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -71.93 351.90 2.40 -69.53 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.62 Total: 21.94 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 6.38 Total: -2.92 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -5.05 Total: -119.86 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.08 Total: -26.50 kcal Atomic # 14 Polarization: 56.03 SS G_CDS: 1.78 Total: 57.80 kcal Total: -71.93 2.40 -69.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.185 kcal (2) G-P(sol) polarization free energy of solvation -71.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds