Wall clock time and date at job start Tue Mar 31 2020 10:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47583 * 270.00334 * 3 2 1 5 5 H 1.48496 * 109.47072 * 30.00610 * 3 2 1 6 6 H 1.48500 * 109.47137 * 150.00348 * 3 2 1 7 7 C 1.38654 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00229 * 0.02562 * 7 2 1 9 9 O 1.34835 * 119.99862 * 179.97438 * 7 2 1 10 10 C 1.35752 * 116.99867 * 185.04415 * 9 7 2 11 11 C 1.38878 * 120.06926 * 354.17477 * 10 9 7 12 12 C 1.38100 * 119.93217 * 180.25352 * 11 10 9 13 13 C 1.38299 * 120.06758 * 0.04254 * 12 11 10 14 14 C 1.50702 * 119.93125 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47029 * 269.98253 * 14 13 12 16 16 C 1.35315 * 125.86916 * 124.71761 * 15 14 13 17 17 C 1.35346 * 106.17965 * 179.90427 * 16 15 14 18 18 C 1.50699 * 126.75564 * 180.12246 * 17 16 15 19 19 H 1.08998 * 110.45597 * 154.54122 * 18 17 16 20 20 C 1.54512 * 110.51209 * 277.14952 * 18 17 16 21 21 C 1.54478 * 104.05986 * 118.64159 * 20 18 17 22 22 O 1.44427 * 104.80640 * 23.98156 * 21 20 18 23 23 C 1.44648 * 105.36751 * 319.56212 * 22 21 20 24 24 N 1.33771 * 106.49509 * 0.35020 * 17 16 15 25 25 N 1.28641 * 108.88502 * 359.77534 * 24 17 16 26 26 C 1.38311 * 120.13959 * 359.96269 * 13 12 11 27 27 C 1.38096 * 120.06782 * 0.02562 * 26 13 12 28 28 H 0.96998 * 120.00173 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.03391 * 0.26049 * 11 10 9 30 30 H 1.08001 * 119.96661 * 180.02562 * 12 11 10 31 31 H 1.08992 * 109.46957 * 29.98274 * 14 13 12 32 32 H 1.08999 * 109.46847 * 149.98663 * 14 13 12 33 33 H 1.08003 * 126.90751 * 0.02562 * 16 15 14 34 34 H 1.08991 * 110.50859 * 237.28849 * 20 18 17 35 35 H 1.09004 * 110.50716 * 359.86426 * 20 18 17 36 36 H 1.09005 * 110.37051 * 142.81228 * 21 20 18 37 37 H 1.09001 * 110.37403 * 265.03372 * 21 20 18 38 38 H 1.08997 * 110.33906 * 281.59419 * 23 22 21 39 39 H 1.08999 * 110.50972 * 159.18623 * 23 22 21 40 40 H 1.08001 * 119.96634 * 180.02562 * 26 13 12 41 41 H 1.07991 * 120.03444 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2007 -0.0011 10 6 3.9734 -2.4056 -0.1079 11 6 3.2240 -3.5746 -0.0886 12 6 3.8543 -4.7990 -0.1923 13 6 5.2305 -4.8618 -0.3143 14 6 5.9152 -6.1996 -0.4266 15 7 6.2569 -6.6871 0.9120 16 6 5.8921 -7.8790 1.4387 17 6 6.4197 -7.9181 2.6845 18 6 6.2980 -9.0425 3.6805 19 1 7.1373 -9.0280 4.3757 20 6 4.9592 -8.9453 4.4457 21 6 4.2277 -10.2587 4.0905 22 8 5.2791 -11.1807 3.7292 23 6 6.2207 -10.4034 2.9536 24 7 7.0663 -6.7602 2.8596 25 7 6.9509 -6.0531 1.7912 26 6 5.9797 -3.6993 -0.3337 27 6 5.3552 -2.4719 -0.2307 28 1 -0.4850 0.8400 0.0004 29 1 2.1493 -3.5263 0.0072 30 1 3.2720 -5.7085 -0.1777 31 1 5.2467 -6.9102 -0.9124 32 1 6.8247 -6.0936 -1.0178 33 1 5.3008 -8.6458 0.9603 34 1 5.1366 -8.8852 5.5194 35 1 4.3865 -8.0826 4.1052 36 1 3.6763 -10.6314 4.9538 37 1 3.5528 -10.1016 3.2491 38 1 5.8541 -10.2697 1.9359 39 1 7.1984 -10.8853 2.9454 40 1 7.0541 -3.7516 -0.4295 41 1 5.9407 -1.5646 -0.2464 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881285749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:40 Heat of formation + Delta-G solvation = 53.453161 kcal Electronic energy + Delta-G solvation = -25005.414862 eV Core-core repulsion = 21274.584180 eV Total energy + Delta-G solvation = -3730.830682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.27209 -39.58809 -39.36641 -37.22630 -34.76968 -33.32389 -32.53316 -30.65252 -30.51017 -30.23741 -28.71336 -26.71813 -25.07278 -23.86077 -22.72320 -22.26071 -21.94482 -20.81368 -20.15973 -18.08783 -17.70385 -17.38599 -16.70551 -16.32677 -15.98574 -15.36944 -15.13394 -15.03695 -14.74582 -14.26368 -13.98682 -13.78763 -13.73047 -13.33494 -13.08705 -12.85887 -12.55979 -12.37045 -12.12234 -12.07817 -11.66411 -11.57631 -11.41202 -11.32668 -11.11835 -10.90511 -10.85672 -10.68353 -10.27979 -10.11265 -9.96369 -9.55560 -9.16125 -9.01694 -8.45513 -7.59478 -6.56193 -4.23125 1.56062 1.75641 1.97040 2.49709 2.65782 3.14106 3.17643 3.32172 3.63339 4.06091 4.12317 4.29705 4.40903 4.42840 4.61646 4.67699 4.68750 4.77500 4.86105 4.92920 4.96102 5.01476 5.12967 5.17826 5.36415 5.40289 5.44880 5.51925 5.57013 5.68332 5.75555 5.90380 5.94429 6.05027 6.13373 6.35420 6.45615 6.57879 6.59662 6.81645 6.97977 7.07881 7.41007 7.63204 7.87274 8.57865 8.77950 9.37574 10.50667 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.002655 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.951029 B =10545.241160 C =11184.671731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.393 4.393 8 H 0.108 0.892 9 O -0.208 6.208 10 C 0.173 3.827 11 C -0.226 4.226 12 C -0.048 4.048 13 C -0.219 4.219 14 C 0.171 3.829 15 N -0.275 5.275 16 C -0.055 4.055 17 C -0.021 4.021 18 C -0.032 4.032 19 H 0.100 0.900 20 C -0.146 4.146 21 C 0.045 3.955 22 O -0.375 6.375 23 C 0.053 3.947 24 N -0.275 5.275 25 N -0.066 5.066 26 C -0.036 4.036 27 C -0.195 4.195 28 H 0.282 0.718 29 H 0.136 0.864 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.184 0.816 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.052 -18.585 1.467 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.125 0.875 9 O -0.112 6.112 10 C 0.119 3.881 11 C -0.245 4.245 12 C -0.067 4.067 13 C -0.221 4.221 14 C 0.052 3.948 15 N -0.069 5.069 16 C -0.206 4.206 17 C -0.159 4.159 18 C -0.053 4.053 19 H 0.118 0.882 20 C -0.185 4.185 21 C -0.032 4.032 22 O -0.293 6.293 23 C -0.025 4.025 24 N -0.140 5.140 25 N -0.046 5.046 26 C -0.055 4.055 27 C -0.214 4.214 28 H 0.092 0.908 29 H 0.153 0.847 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.202 0.798 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.135 0.865 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.704 -17.102 1.810 20.257 hybrid contribution -0.703 0.056 -0.468 0.846 sum 10.001 -17.046 1.341 19.809 Atomic orbital electron populations 1.69635 1.05642 1.28827 1.46828 1.24499 0.95060 0.99013 0.95288 0.86169 0.80415 0.81194 0.79121 1.19698 1.20572 1.18220 1.20799 0.76686 0.96775 1.52540 0.87477 1.83581 1.22853 1.25855 1.78906 1.19202 0.91765 0.85462 0.91638 1.21225 1.01278 0.91673 1.10343 1.20609 0.93082 0.96961 0.96041 1.19001 0.93741 0.92537 1.16846 1.20870 1.01180 0.95425 0.77306 1.47859 1.33176 1.11430 1.14399 1.23285 1.08077 0.92447 0.96830 1.21568 1.02757 0.96809 0.94807 1.20708 0.99597 0.90249 0.94706 0.88153 1.23013 0.95273 0.98788 1.01377 1.23452 0.90694 0.88665 1.00411 1.89165 1.34648 1.33401 1.72128 1.23566 0.94306 0.89891 0.94693 1.75085 1.19518 1.02956 1.16476 1.78342 1.12288 1.19839 0.94090 1.20483 0.98421 0.91036 0.95576 1.20212 0.91934 0.98001 1.11291 0.90788 0.84687 0.87320 0.87624 0.88121 0.79849 0.89984 0.90039 0.88863 0.92072 0.91857 0.88525 0.86462 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.49 13.96 55.48 0.77 -23.71 16 2 C 0.07 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 21.07 28.62 -169.99 -4.86 16.21 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.39 -10.71 9.95 30.89 0.31 -10.41 16 8 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 9 O -0.21 -5.32 8.59 0.03 0.00 -5.32 16 10 C 0.17 3.83 6.65 -39.11 -0.26 3.57 16 11 C -0.23 -4.60 9.17 -39.39 -0.36 -4.96 16 12 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 16 13 C -0.22 -3.24 5.25 -104.57 -0.55 -3.79 16 14 C 0.17 1.83 6.58 -5.19 -0.03 1.79 16 15 N -0.28 -3.50 3.43 -62.45 -0.21 -3.71 16 16 C -0.06 -0.59 10.57 -17.05 -0.18 -0.77 16 17 C -0.02 -0.25 6.06 -82.78 -0.50 -0.75 16 18 C -0.03 -0.30 3.64 -90.20 -0.33 -0.63 16 19 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 20 C -0.15 -1.28 6.73 -25.16 -0.17 -1.45 16 21 C 0.04 0.35 7.64 37.93 0.29 0.64 16 22 O -0.37 -3.61 11.65 -35.23 -0.41 -4.02 16 23 C 0.05 0.42 7.15 37.94 0.27 0.69 16 24 N -0.27 -4.32 12.41 33.29 0.41 -3.91 16 25 N -0.07 -1.06 12.92 60.35 0.78 -0.28 16 26 C -0.04 -0.58 9.69 -39.61 -0.38 -0.96 16 27 C -0.20 -3.70 9.99 -39.39 -0.39 -4.10 16 28 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.14 2.90 5.64 -52.48 -0.30 2.60 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.11 0.80 8.01 -51.93 -0.42 0.38 16 32 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.18 1.26 7.10 -52.48 -0.37 0.89 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.81 7.73 -51.93 -0.40 0.41 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.43 6.19 -51.93 -0.32 0.11 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -31.67 348.52 -6.07 -37.74 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.03 Total: 2.34 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -2.77 Total: -20.59 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 1.75 Total: -31.61 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.41 Total: -9.34 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.67 -6.07 -37.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881285749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.193 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds