Wall clock time and date at job start Tue Mar 31 2020 10:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47583 * 270.00334 * 3 2 1 5 5 H 1.48496 * 109.47072 * 30.00610 * 3 2 1 6 6 H 1.48500 * 109.47137 * 150.00348 * 3 2 1 7 7 C 1.38654 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00229 * 0.02562 * 7 2 1 9 9 O 1.34835 * 119.99862 * 179.97438 * 7 2 1 10 10 C 1.35752 * 116.99867 * 185.04415 * 9 7 2 11 11 C 1.38878 * 120.06926 * 354.17477 * 10 9 7 12 12 C 1.38100 * 119.93217 * 180.25352 * 11 10 9 13 13 C 1.38299 * 120.06758 * 0.04254 * 12 11 10 14 14 C 1.50702 * 119.93125 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47029 * 269.98253 * 14 13 12 16 16 C 1.35315 * 125.86916 * 124.71761 * 15 14 13 17 17 C 1.35346 * 106.17965 * 179.90427 * 16 15 14 18 18 C 1.50699 * 126.75564 * 180.12246 * 17 16 15 19 19 H 1.08998 * 110.45597 * 154.54122 * 18 17 16 20 20 C 1.54512 * 110.51209 * 277.14952 * 18 17 16 21 21 C 1.54478 * 104.05986 * 118.64159 * 20 18 17 22 22 O 1.44427 * 104.80640 * 23.98156 * 21 20 18 23 23 C 1.44648 * 105.36751 * 319.56212 * 22 21 20 24 24 N 1.33771 * 106.49509 * 0.35020 * 17 16 15 25 25 N 1.28641 * 108.88502 * 359.77534 * 24 17 16 26 26 C 1.38311 * 120.13959 * 359.96269 * 13 12 11 27 27 C 1.38096 * 120.06782 * 0.02562 * 26 13 12 28 28 H 0.96998 * 120.00173 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.03391 * 0.26049 * 11 10 9 30 30 H 1.08001 * 119.96661 * 180.02562 * 12 11 10 31 31 H 1.08992 * 109.46957 * 29.98274 * 14 13 12 32 32 H 1.08999 * 109.46847 * 149.98663 * 14 13 12 33 33 H 1.08003 * 126.90751 * 0.02562 * 16 15 14 34 34 H 1.08991 * 110.50859 * 237.28849 * 20 18 17 35 35 H 1.09004 * 110.50716 * 359.86426 * 20 18 17 36 36 H 1.09005 * 110.37051 * 142.81228 * 21 20 18 37 37 H 1.09001 * 110.37403 * 265.03372 * 21 20 18 38 38 H 1.08997 * 110.33906 * 281.59419 * 23 22 21 39 39 H 1.08999 * 110.50972 * 159.18623 * 23 22 21 40 40 H 1.08001 * 119.96634 * 180.02562 * 26 13 12 41 41 H 1.07991 * 120.03444 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2007 -0.0011 10 6 3.9734 -2.4056 -0.1079 11 6 3.2240 -3.5746 -0.0886 12 6 3.8543 -4.7990 -0.1923 13 6 5.2305 -4.8618 -0.3143 14 6 5.9152 -6.1996 -0.4266 15 7 6.2569 -6.6871 0.9120 16 6 5.8921 -7.8790 1.4387 17 6 6.4197 -7.9181 2.6845 18 6 6.2980 -9.0425 3.6805 19 1 7.1373 -9.0280 4.3757 20 6 4.9592 -8.9453 4.4457 21 6 4.2277 -10.2587 4.0905 22 8 5.2791 -11.1807 3.7292 23 6 6.2207 -10.4034 2.9536 24 7 7.0663 -6.7602 2.8596 25 7 6.9509 -6.0531 1.7912 26 6 5.9797 -3.6993 -0.3337 27 6 5.3552 -2.4719 -0.2307 28 1 -0.4850 0.8400 0.0004 29 1 2.1493 -3.5263 0.0072 30 1 3.2720 -5.7085 -0.1777 31 1 5.2467 -6.9102 -0.9124 32 1 6.8247 -6.0936 -1.0178 33 1 5.3008 -8.6458 0.9603 34 1 5.1366 -8.8852 5.5194 35 1 4.3865 -8.0826 4.1052 36 1 3.6763 -10.6314 4.9538 37 1 3.5528 -10.1016 3.2491 38 1 5.8541 -10.2697 1.9359 39 1 7.1984 -10.8853 2.9454 40 1 7.0541 -3.7516 -0.4295 41 1 5.9407 -1.5646 -0.2464 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881285749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:39 Heat of formation + Delta-G solvation = 32.463204 kcal Electronic energy + Delta-G solvation = -25006.325055 eV Core-core repulsion = 21274.584180 eV Total energy + Delta-G solvation = -3731.740875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.22944 -40.99416 -40.21778 -38.74347 -35.83723 -34.52538 -34.11851 -31.96448 -31.76346 -31.18055 -29.45476 -28.14368 -26.71950 -24.60463 -23.88561 -23.40002 -23.03117 -21.96480 -21.09317 -19.92141 -19.22773 -18.42788 -17.58036 -17.19948 -16.76106 -16.63985 -16.29057 -15.99271 -15.86753 -15.82986 -15.66082 -15.24004 -14.59948 -14.51162 -14.40338 -14.15050 -13.92656 -13.55062 -13.19482 -13.12102 -12.94178 -12.60887 -12.54741 -12.51399 -12.30492 -12.25791 -12.01588 -11.92319 -11.50191 -11.36888 -10.99038 -10.95756 -10.70987 -10.06275 -9.89732 -9.19507 -8.55901 -6.29123 0.32364 0.49398 0.73515 1.28728 1.31323 1.48436 1.53182 1.67294 2.23538 2.71939 2.97764 3.00397 3.07602 3.29094 3.56481 3.76032 3.81471 3.91656 3.97864 4.03740 4.09770 4.15316 4.23332 4.35510 4.37984 4.44886 4.50186 4.63837 4.77315 4.83574 4.87794 4.89908 4.94482 5.07064 5.13243 5.15966 5.21203 5.25678 5.47217 5.58502 5.70268 5.71780 5.82473 5.84397 6.12914 6.78136 7.50390 7.58877 8.55321 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.002655 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.951029 B =10545.241160 C =11184.671731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.402 4.402 8 H 0.084 0.916 9 O -0.242 6.242 10 C 0.133 3.867 11 C -0.244 4.244 12 C -0.046 4.046 13 C -0.189 4.189 14 C 0.168 3.832 15 N -0.276 5.276 16 C -0.037 4.037 17 C -0.029 4.029 18 C -0.032 4.032 19 H 0.093 0.907 20 C -0.145 4.145 21 C 0.046 3.954 22 O -0.392 6.392 23 C 0.056 3.944 24 N -0.312 5.312 25 N -0.111 5.111 26 C -0.034 4.034 27 C -0.200 4.200 28 H 0.286 0.714 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.128 0.872 33 H 0.229 0.771 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.996 -21.626 0.444 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.478 4.478 8 H 0.102 0.898 9 O -0.149 6.149 10 C 0.083 3.917 11 C -0.263 4.263 12 C -0.064 4.064 13 C -0.190 4.190 14 C 0.049 3.951 15 N -0.069 5.069 16 C -0.188 4.188 17 C -0.168 4.168 18 C -0.053 4.053 19 H 0.111 0.889 20 C -0.183 4.183 21 C -0.030 4.030 22 O -0.311 6.311 23 C -0.021 4.021 24 N -0.177 5.177 25 N -0.090 5.090 26 C -0.053 4.053 27 C -0.220 4.220 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.146 0.854 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.168 0.832 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.692 -20.170 0.785 23.844 hybrid contribution -1.063 0.575 -0.141 1.216 sum 11.629 -19.596 0.644 22.796 Atomic orbital electron populations 1.69712 1.06856 1.29751 1.49595 1.25262 0.95865 1.02116 0.95336 0.85252 0.78742 0.77534 0.79433 1.18766 1.19144 1.19002 1.20724 0.77914 0.96242 1.52927 0.89842 1.83529 1.21475 1.27595 1.82299 1.19762 0.93186 0.85228 0.93520 1.21280 1.00393 0.93157 1.11484 1.20989 0.94273 0.96556 0.94619 1.19528 0.93128 0.94708 1.11677 1.21216 1.03143 0.93718 0.76976 1.47882 1.32652 1.11940 1.14425 1.23938 1.06657 0.92209 0.96019 1.21997 1.02415 0.96343 0.96056 1.20760 0.99563 0.90478 0.94475 0.88880 1.22982 0.95017 0.98932 1.01407 1.23530 0.90415 0.87711 1.01374 1.89156 1.35265 1.34126 1.72545 1.23647 0.94766 0.88628 0.95045 1.75027 1.20973 1.04588 1.17138 1.78296 1.14508 1.21131 0.95026 1.20944 1.00154 0.90231 0.93945 1.20515 0.90695 0.99898 1.10846 0.90421 0.87114 0.83693 0.83046 0.85367 0.75461 0.89921 0.91328 0.87858 0.90884 0.90017 0.87542 0.83249 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 13.96 21.61 0.30 -53.86 16 2 C 0.01 0.76 5.49 84.83 0.47 1.23 16 3 Si 0.97 45.06 28.62 68.60 1.96 47.03 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.40 -23.35 9.95 67.92 0.68 -22.67 16 8 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 9 O -0.24 -13.02 8.59 -22.81 -0.20 -13.22 16 10 C 0.13 6.07 6.65 22.58 0.15 6.22 16 11 C -0.24 -10.13 9.17 22.39 0.21 -9.93 16 12 C -0.05 -1.38 9.69 22.25 0.22 -1.17 16 13 C -0.19 -4.83 5.25 -19.83 -0.10 -4.93 16 14 C 0.17 2.57 6.58 85.63 0.56 3.13 16 15 N -0.28 -5.74 3.43 -351.48 -1.21 -6.95 16 16 C -0.04 -0.60 10.57 83.49 0.88 0.28 16 17 C -0.03 -0.61 6.06 41.60 0.25 -0.36 16 18 C -0.03 -0.53 3.64 -10.52 -0.04 -0.57 16 19 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 20 C -0.14 -2.28 6.73 31.61 0.21 -2.07 16 21 C 0.05 0.60 7.64 72.48 0.55 1.15 16 22 O -0.39 -6.38 11.65 -148.98 -1.74 -8.12 16 23 C 0.06 0.70 7.15 72.49 0.52 1.22 16 24 N -0.31 -9.33 12.41 -48.60 -0.60 -9.93 16 25 N -0.11 -3.26 12.92 37.02 0.48 -2.78 16 26 C -0.03 -1.00 9.69 22.25 0.22 -0.78 16 27 C -0.20 -7.50 9.99 22.39 0.22 -7.28 16 28 H 0.29 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.11 5.10 5.64 -2.91 -0.02 5.08 16 30 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 31 H 0.15 1.07 8.01 -2.39 -0.02 1.05 16 32 H 0.13 1.41 8.08 -2.39 -0.02 1.40 16 33 H 0.23 1.52 7.10 -2.91 -0.02 1.50 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.26 7.73 -2.39 -0.02 1.24 16 36 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.71 6.19 -2.39 -0.01 0.69 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.13 4.49 8.06 -2.92 -0.02 4.47 16 Total: -1.00 -75.44 348.52 5.05 -70.38 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.06 Total: 13.97 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 4.99 Total: -36.53 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -1.03 Total: -73.51 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.93 Total: -21.34 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.96 Total: 47.03 kcal Total: -75.44 5.05 -70.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881285749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.846 kcal (2) G-P(sol) polarization free energy of solvation -75.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds