Wall clock time and date at job start Tue Mar 31 2020 11:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34713 * 117.00298 * 2 1 4 4 O 1.21467 * 119.99745 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00237 * 180.02562 * 3 2 1 6 6 C 1.39648 * 120.14941 * 6.26237 * 5 3 2 7 7 C 1.37918 * 119.84497 * 180.25851 * 6 5 3 8 8 C 1.50704 * 119.92337 * 179.79437 * 7 6 5 9 9 N 1.46496 * 109.46945 * 269.71879 * 8 7 6 10 10 C 1.35312 * 125.86825 * 125.00222 * 9 8 7 11 11 C 1.35347 * 106.17592 * 179.97438 * 10 9 8 12 12 C 1.50700 * 126.74862 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47069 * 124.99822 * 12 11 10 14 14 H 1.07994 * 120.00055 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00187 * 179.72003 * 13 12 11 16 16 N 1.31515 * 119.99494 * 0.27764 * 15 13 12 17 17 Si 1.86799 * 120.00147 * 180.27376 * 15 13 12 18 18 H 1.48496 * 109.46917 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46830 * 120.00254 * 17 15 13 20 20 H 1.48498 * 109.47066 * 239.99914 * 17 15 13 21 21 N 1.33764 * 106.49809 * 0.25664 * 11 10 9 22 22 N 1.28634 * 108.88634 * 359.57083 * 21 11 10 23 23 C 1.38386 * 120.15395 * 359.51207 * 7 6 5 24 24 C 1.38352 * 120.30286 * 0.23586 * 23 7 6 25 25 C 1.37968 * 120.14728 * 0.02562 * 24 23 7 26 26 C 1.50700 * 120.07487 * 180.02562 * 25 24 23 27 27 H 1.08999 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47098 * 299.99679 * 1 2 3 29 29 H 1.08997 * 109.47168 * 59.99835 * 1 2 3 30 30 H 1.08004 * 120.07610 * 0.02740 * 6 5 3 31 31 H 1.09007 * 109.47097 * 149.71925 * 8 7 6 32 32 H 1.08999 * 109.47485 * 29.72304 * 8 7 6 33 33 H 1.08009 * 126.91306 * 0.02562 * 10 9 8 34 34 H 1.08992 * 109.47563 * 4.99918 * 12 11 10 35 35 H 1.09002 * 109.46988 * 244.99315 * 12 11 10 36 36 H 0.97002 * 119.99347 * 179.97438 * 16 15 13 37 37 H 1.07996 * 119.85346 * 180.26180 * 23 7 6 38 38 H 1.07997 * 119.92828 * 180.02562 * 24 23 7 39 39 H 1.09005 * 109.47162 * 96.53799 * 26 25 24 40 40 H 1.09006 * 109.46890 * 216.53209 * 26 25 24 41 41 H 1.08991 * 109.47452 * 336.53590 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3020 0.1156 -0.1328 7 6 5.6789 0.1944 -0.1272 8 6 6.5042 -1.0589 -0.2652 9 7 6.7803 -1.6105 1.0636 10 6 6.5016 -2.8698 1.4728 11 6 6.9202 -2.9502 2.7574 12 6 6.8324 -4.1532 3.6608 13 6 8.2020 -4.4786 4.1987 14 1 9.0512 -3.8749 3.9145 15 6 8.3701 -5.5438 5.0579 16 7 7.3360 -6.2792 5.4036 17 14 10.0665 -5.9425 5.7307 18 1 11.0529 -4.9713 5.1932 19 1 10.0440 -5.8556 7.2130 20 1 10.4509 -7.3172 5.3212 21 7 7.4227 -1.7503 3.0690 22 7 7.3300 -0.9808 2.0424 23 6 6.3044 1.4224 -0.0010 24 6 5.5544 2.5781 0.1251 25 6 4.1762 2.5132 0.1264 26 6 3.3609 3.7731 0.2634 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 3.8151 -0.8430 -0.2355 31 1 7.4447 -0.8218 -0.7627 32 1 5.9555 -1.7922 -0.8562 33 1 6.0390 -3.6535 0.8911 34 1 6.4521 -5.0045 3.0963 35 1 6.1585 -3.9366 4.4897 36 1 7.4543 -7.0288 6.0077 37 1 7.3828 1.4790 -0.0015 38 1 6.0488 3.5333 0.2228 39 1 3.0599 4.1204 -0.7251 40 1 2.4734 3.5683 0.8623 41 1 3.9594 4.5419 0.7519 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881391174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:50 Heat of formation + Delta-G solvation = 36.486740 kcal Electronic energy + Delta-G solvation = -24942.524900 eV Core-core repulsion = 21210.958499 eV Total energy + Delta-G solvation = -3731.566401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.51440 -41.00484 -39.36481 -36.86787 -35.19823 -33.40332 -32.37460 -31.90888 -31.01990 -28.99216 -27.99083 -27.32239 -25.57924 -24.27371 -23.36663 -22.20262 -21.48106 -20.75081 -19.92558 -18.12539 -17.17302 -16.85179 -16.66897 -16.20890 -15.98421 -15.84736 -15.49686 -14.67483 -14.49755 -14.28916 -14.05945 -13.83229 -13.35654 -13.27631 -13.14846 -12.62095 -12.43864 -12.37204 -12.26514 -12.12172 -11.99800 -11.68456 -11.50175 -11.09723 -10.98184 -10.72037 -10.64360 -10.40992 -10.07880 -9.68882 -9.43931 -9.37109 -9.26964 -9.05329 -8.42273 -8.11104 -5.97994 -3.98278 0.37509 0.86259 2.16644 2.25581 2.37758 2.84827 3.36001 3.42553 3.46845 3.49231 3.54670 4.09105 4.30145 4.47686 4.52424 4.57571 4.59433 4.80202 4.88006 4.89693 4.94281 5.12992 5.21052 5.23191 5.31118 5.39223 5.39516 5.46870 5.55626 5.75272 5.84673 5.89465 5.99786 6.06419 6.10841 6.24258 6.33853 6.48242 7.14221 7.18457 7.43026 7.54702 7.64134 8.00165 8.38829 9.05544 9.32906 9.64526 11.13203 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018792 B = 0.002746 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.652496 B =10195.111096 C =11075.748931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.510 3.490 4 O -0.503 6.503 5 C -0.139 4.139 6 C -0.034 4.034 7 C -0.131 4.131 8 C 0.165 3.835 9 N -0.304 5.304 10 C -0.083 4.083 11 C 0.035 3.965 12 C 0.092 3.908 13 C -0.502 4.502 14 H 0.059 0.941 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 N -0.261 5.261 22 N -0.104 5.104 23 C -0.039 4.039 24 C -0.137 4.137 25 C -0.007 4.007 26 C -0.125 4.125 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.140 0.860 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.182 0.818 34 H 0.036 0.964 35 H 0.039 0.961 36 H 0.260 0.740 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.001 15.481 -17.738 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.356 3.644 4 O -0.392 6.392 5 C -0.140 4.140 6 C -0.053 4.053 7 C -0.132 4.132 8 C 0.044 3.956 9 N -0.100 5.100 10 C -0.231 4.231 11 C -0.102 4.102 12 C 0.053 3.947 13 C -0.540 4.540 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 N -0.128 5.128 22 N -0.083 5.083 23 C -0.057 4.057 24 C -0.154 4.154 25 C -0.007 4.007 26 C -0.181 4.181 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.157 0.843 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.199 0.801 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.674 16.940 -17.180 26.383 hybrid contribution 0.206 -1.343 -0.102 1.363 sum -10.467 15.597 -17.281 25.524 Atomic orbital electron populations 1.23301 0.75710 1.04010 1.02590 1.86562 1.23764 1.32555 1.84178 1.21159 0.89015 0.81472 0.72706 1.90784 1.66968 1.35481 1.46004 1.18848 0.89007 0.94525 1.11607 1.21333 0.92954 0.98035 0.92944 1.19691 0.93443 0.94760 1.05271 1.20703 1.00693 0.93824 0.80411 1.47192 1.41394 1.09562 1.11808 1.23375 1.11948 0.89012 0.98737 1.23010 0.97440 0.96080 0.93653 1.17728 0.98444 0.86162 0.92373 1.21087 0.93365 1.12525 1.27062 0.92244 1.24978 0.96951 0.96205 0.96335 1.69959 1.29552 1.18891 1.35413 0.86465 0.84433 0.77954 0.78784 1.19705 1.20963 1.21112 1.75077 1.17890 1.02384 1.17495 1.78171 1.15955 1.22237 0.91915 1.21379 1.00807 0.91396 0.92130 1.21037 0.92452 0.99146 1.02811 1.20105 0.94114 0.94084 0.92436 1.21152 1.00300 0.93258 1.03433 0.87786 0.91714 0.91820 0.84261 0.87867 0.87066 0.80121 0.94560 0.94350 0.92995 0.84625 0.84567 0.90333 0.88877 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.76 9.84 -40.53 -0.40 -4.16 16 3 C 0.51 5.99 7.83 34.61 0.27 6.26 16 4 O -0.50 -6.44 13.13 -19.24 -0.25 -6.69 16 5 C -0.14 -1.57 5.87 -104.98 -0.62 -2.18 16 6 C -0.03 -0.36 9.26 -39.17 -0.36 -0.72 16 7 C -0.13 -1.36 5.24 -104.68 -0.55 -1.91 16 8 C 0.17 1.66 6.58 -5.19 -0.03 1.63 16 9 N -0.30 -4.85 3.43 -62.44 -0.21 -5.06 16 10 C -0.08 -1.46 11.49 -17.05 -0.20 -1.66 16 11 C 0.04 0.80 6.44 -82.78 -0.53 0.27 16 12 C 0.09 2.40 5.55 -29.03 -0.16 2.24 16 13 C -0.50 -14.49 9.09 -34.44 -0.31 -14.80 16 14 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 17 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 N -0.26 -6.21 12.40 33.29 0.41 -5.80 16 22 N -0.10 -2.07 12.92 60.35 0.78 -1.29 16 23 C -0.04 -0.38 9.69 -39.48 -0.38 -0.76 16 24 C -0.14 -1.27 9.66 -39.64 -0.38 -1.65 16 25 C -0.01 -0.07 5.92 -104.21 -0.62 -0.69 16 26 C -0.13 -1.15 8.74 36.01 0.31 -0.84 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.14 1.32 7.63 -52.48 -0.40 0.92 16 31 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.11 0.78 8.01 -51.93 -0.42 0.36 16 33 H 0.18 2.49 8.06 -52.48 -0.42 2.07 16 34 H 0.04 0.94 8.12 -51.93 -0.42 0.51 16 35 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.01 5.85 -51.93 -0.30 0.71 16 41 H 0.06 0.48 8.04 -51.93 -0.42 0.07 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -35.58 359.91 -6.43 -42.01 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -5.30 Total: -3.64 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -2.59 Total: -11.96 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 1.71 Total: -38.09 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.65 Total: -10.85 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.58 -6.43 -42.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881391174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.495 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds