Wall clock time and date at job start Tue Mar 31 2020 11:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34713 * 117.00298 * 2 1 4 4 O 1.21467 * 119.99745 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00237 * 180.02562 * 3 2 1 6 6 C 1.39648 * 120.14941 * 6.26237 * 5 3 2 7 7 C 1.37918 * 119.84497 * 180.25851 * 6 5 3 8 8 C 1.50704 * 119.92337 * 179.79437 * 7 6 5 9 9 N 1.46496 * 109.46945 * 269.71879 * 8 7 6 10 10 C 1.35312 * 125.86825 * 125.00222 * 9 8 7 11 11 C 1.35347 * 106.17592 * 179.97438 * 10 9 8 12 12 C 1.50700 * 126.74862 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47069 * 124.99822 * 12 11 10 14 14 H 1.07994 * 120.00055 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00187 * 179.72003 * 13 12 11 16 16 N 1.31515 * 119.99494 * 0.27764 * 15 13 12 17 17 Si 1.86799 * 120.00147 * 180.27376 * 15 13 12 18 18 H 1.48496 * 109.46917 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46830 * 120.00254 * 17 15 13 20 20 H 1.48498 * 109.47066 * 239.99914 * 17 15 13 21 21 N 1.33764 * 106.49809 * 0.25664 * 11 10 9 22 22 N 1.28634 * 108.88634 * 359.57083 * 21 11 10 23 23 C 1.38386 * 120.15395 * 359.51207 * 7 6 5 24 24 C 1.38352 * 120.30286 * 0.23586 * 23 7 6 25 25 C 1.37968 * 120.14728 * 0.02562 * 24 23 7 26 26 C 1.50700 * 120.07487 * 180.02562 * 25 24 23 27 27 H 1.08999 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47098 * 299.99679 * 1 2 3 29 29 H 1.08997 * 109.47168 * 59.99835 * 1 2 3 30 30 H 1.08004 * 120.07610 * 0.02740 * 6 5 3 31 31 H 1.09007 * 109.47097 * 149.71925 * 8 7 6 32 32 H 1.08999 * 109.47485 * 29.72304 * 8 7 6 33 33 H 1.08009 * 126.91306 * 0.02562 * 10 9 8 34 34 H 1.08992 * 109.47563 * 4.99918 * 12 11 10 35 35 H 1.09002 * 109.46988 * 244.99315 * 12 11 10 36 36 H 0.97002 * 119.99347 * 179.97438 * 16 15 13 37 37 H 1.07996 * 119.85346 * 180.26180 * 23 7 6 38 38 H 1.07997 * 119.92828 * 180.02562 * 24 23 7 39 39 H 1.09005 * 109.47162 * 96.53799 * 26 25 24 40 40 H 1.09006 * 109.46890 * 216.53209 * 26 25 24 41 41 H 1.08991 * 109.47452 * 336.53590 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3020 0.1156 -0.1328 7 6 5.6789 0.1944 -0.1272 8 6 6.5042 -1.0589 -0.2652 9 7 6.7803 -1.6105 1.0636 10 6 6.5016 -2.8698 1.4728 11 6 6.9202 -2.9502 2.7574 12 6 6.8324 -4.1532 3.6608 13 6 8.2020 -4.4786 4.1987 14 1 9.0512 -3.8749 3.9145 15 6 8.3701 -5.5438 5.0579 16 7 7.3360 -6.2792 5.4036 17 14 10.0665 -5.9425 5.7307 18 1 11.0529 -4.9713 5.1932 19 1 10.0440 -5.8556 7.2130 20 1 10.4509 -7.3172 5.3212 21 7 7.4227 -1.7503 3.0690 22 7 7.3300 -0.9808 2.0424 23 6 6.3044 1.4224 -0.0010 24 6 5.5544 2.5781 0.1251 25 6 4.1762 2.5132 0.1264 26 6 3.3609 3.7731 0.2634 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 3.8151 -0.8430 -0.2355 31 1 7.4447 -0.8218 -0.7627 32 1 5.9555 -1.7922 -0.8562 33 1 6.0390 -3.6535 0.8911 34 1 6.4521 -5.0045 3.0963 35 1 6.1585 -3.9366 4.4897 36 1 7.4543 -7.0288 6.0077 37 1 7.3828 1.4790 -0.0015 38 1 6.0488 3.5333 0.2228 39 1 3.0599 4.1204 -0.7251 40 1 2.4734 3.5683 0.8623 41 1 3.9594 4.5419 0.7519 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881391174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:49 Heat of formation + Delta-G solvation = 14.818878 kcal Electronic energy + Delta-G solvation = -24943.464489 eV Core-core repulsion = 21210.958499 eV Total energy + Delta-G solvation = -3732.505990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.98099 -41.82461 -40.15249 -37.70541 -36.37177 -35.29401 -33.55276 -32.79095 -32.66233 -29.98505 -29.21480 -28.58248 -26.49135 -25.45563 -24.98933 -23.04545 -22.73602 -22.01854 -21.11275 -18.98474 -18.52811 -18.11005 -17.78827 -17.48639 -17.04606 -16.68122 -16.54274 -16.40986 -15.55745 -15.48299 -14.98980 -14.61052 -14.54482 -14.40431 -14.09010 -14.01445 -13.69549 -13.63438 -13.18951 -13.05057 -13.02751 -12.83540 -12.76451 -12.62409 -12.46224 -12.25070 -11.85963 -11.84877 -11.62233 -11.32850 -11.24619 -10.79941 -10.56196 -10.14212 -9.86546 -9.76791 -8.16989 -6.25241 -0.42646 0.07595 0.83852 1.33666 1.40939 1.42676 1.55656 1.62937 1.78079 1.83926 2.46134 2.67161 3.15943 3.28678 3.55490 3.69147 3.79284 3.84512 3.93374 4.14705 4.23455 4.25267 4.30018 4.36993 4.43956 4.54725 4.57661 4.66136 4.68945 4.73684 4.80667 4.88576 5.00248 5.13820 5.26415 5.30090 5.36999 5.47703 5.49819 5.58302 5.74282 5.79442 5.89626 6.25397 6.59601 6.83662 7.41418 7.78946 8.94138 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018792 B = 0.002746 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.652496 B =10195.111096 C =11075.748931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.507 3.493 4 O -0.521 6.521 5 C -0.159 4.159 6 C -0.037 4.037 7 C -0.140 4.140 8 C 0.154 3.846 9 N -0.283 5.283 10 C -0.050 4.050 11 C -0.011 4.011 12 C 0.102 3.898 13 C -0.521 4.521 14 H 0.045 0.955 15 C 0.007 3.993 16 N -0.928 5.928 17 Si 0.961 3.039 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.271 1.271 21 N -0.312 5.312 22 N -0.111 5.111 23 C -0.043 4.043 24 C -0.137 4.137 25 C -0.016 4.016 26 C -0.122 4.122 27 H 0.130 0.870 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.226 0.774 34 H 0.034 0.966 35 H 0.004 0.996 36 H 0.266 0.734 37 H 0.149 0.851 38 H 0.160 0.840 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.331 15.548 -19.644 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.354 3.646 4 O -0.413 6.413 5 C -0.160 4.160 6 C -0.055 4.055 7 C -0.141 4.141 8 C 0.035 3.965 9 N -0.078 5.078 10 C -0.200 4.200 11 C -0.149 4.149 12 C 0.063 3.937 13 C -0.559 4.559 14 H 0.063 0.937 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.786 3.214 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.196 1.196 21 N -0.179 5.179 22 N -0.089 5.089 23 C -0.061 4.061 24 C -0.155 4.155 25 C -0.017 4.017 26 C -0.178 4.178 27 H 0.148 0.852 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.167 0.833 31 H 0.148 0.852 32 H 0.169 0.831 33 H 0.242 0.758 34 H 0.052 0.948 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.167 0.833 38 H 0.178 0.822 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.009 17.030 -19.113 27.486 hybrid contribution -0.103 -1.280 0.373 1.337 sum -10.113 15.750 -18.739 26.486 Atomic orbital electron populations 1.23572 0.74167 1.05812 1.02715 1.86546 1.25377 1.32034 1.83874 1.21352 0.89383 0.81548 0.72311 1.90770 1.67434 1.36036 1.47045 1.19035 0.88950 0.95351 1.12676 1.21477 0.93203 0.98229 0.92617 1.19755 0.93317 0.95127 1.05856 1.21351 1.02739 0.94711 0.77689 1.47628 1.38624 1.08766 1.12806 1.23768 1.09112 0.90190 0.96958 1.22624 1.01145 0.95395 0.95696 1.17370 0.96430 0.87836 0.92023 1.21319 0.94212 1.12619 1.27753 0.93704 1.25796 1.00855 0.95974 0.96462 1.70052 1.31516 1.19341 1.35908 0.85452 0.79657 0.78137 0.78107 1.19773 1.20402 1.19591 1.74982 1.19861 1.03233 1.19836 1.78029 1.16718 1.21998 0.92202 1.21663 1.01641 0.91436 0.91375 1.21320 0.91996 1.00214 1.01930 1.20358 0.94850 0.94209 0.92271 1.21112 0.99718 0.93420 1.03504 0.85177 0.92095 0.91248 0.83320 0.85158 0.83113 0.75794 0.94753 0.97773 0.92556 0.83278 0.82248 0.89904 0.90776 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.36 -7.44 9.84 -56.23 -0.55 -7.99 16 3 C 0.51 11.78 7.83 70.33 0.55 12.33 16 4 O -0.52 -13.47 13.13 19.94 0.26 -13.21 16 5 C -0.16 -3.45 5.87 -20.10 -0.12 -3.57 16 6 C -0.04 -0.71 9.26 22.53 0.21 -0.50 16 7 C -0.14 -2.52 5.24 -19.90 -0.10 -2.63 16 8 C 0.15 2.48 6.58 85.64 0.56 3.04 16 9 N -0.28 -8.26 3.43 -351.46 -1.21 -9.46 16 10 C -0.05 -1.67 11.49 83.49 0.96 -0.71 16 11 C -0.01 -0.49 6.44 41.60 0.27 -0.22 16 12 C 0.10 5.51 5.55 29.10 0.16 5.67 16 13 C -0.52 -30.76 9.09 25.60 0.23 -30.53 16 14 H 0.04 2.72 7.74 -2.91 -0.02 2.69 16 15 C 0.01 0.41 5.46 84.66 0.46 0.88 16 16 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 17 Si 0.96 45.62 29.54 68.60 2.03 47.64 16 18 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 N -0.31 -15.02 12.40 -48.61 -0.60 -15.62 16 22 N -0.11 -4.28 12.92 37.02 0.48 -3.80 16 23 C -0.04 -0.73 9.69 22.33 0.22 -0.51 16 24 C -0.14 -2.26 9.66 22.23 0.21 -2.05 16 25 C -0.02 -0.32 5.92 -19.60 -0.12 -0.44 16 26 C -0.12 -2.15 8.74 71.24 0.62 -1.52 16 27 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.15 2.48 7.63 -2.91 -0.02 2.46 16 31 H 0.13 1.52 8.08 -2.38 -0.02 1.50 16 32 H 0.15 1.30 8.01 -2.39 -0.02 1.28 16 33 H 0.23 5.23 8.06 -2.91 -0.02 5.20 16 34 H 0.03 1.81 8.12 -2.39 -0.02 1.79 16 35 H 0.00 0.24 8.14 -2.39 -0.02 0.23 16 36 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.07 1.62 5.85 -2.38 -0.01 1.61 16 41 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 Total: -1.00 -79.90 359.91 7.06 -72.85 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 1.05 Total: 4.18 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 5.32 Total: -19.14 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -1.04 Total: -84.34 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.29 Total: -21.20 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -79.90 7.06 -72.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881391174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.665 kcal (2) G-P(sol) polarization free energy of solvation -79.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds