Wall clock time and date at job start Tue Mar 31 2020 10:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86796 * 120.00111 * 2 1 4 4 H 1.48504 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47334 * 300.00276 * 3 2 1 6 6 H 1.48503 * 109.47261 * 60.00377 * 3 2 1 7 7 C 1.40034 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.41337 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.40612 * 119.78393 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.12888 * 180.02562 * 10 9 7 12 12 C 1.38696 * 118.66830 * 359.74796 * 11 10 9 13 13 C 1.39641 * 119.49491 * 0.52213 * 12 11 10 14 14 N 1.39269 * 119.57588 * 179.74774 * 13 12 11 15 15 C 1.34771 * 120.00011 * 189.97704 * 14 13 12 16 16 O 1.21277 * 119.99953 * 356.16801 * 15 14 13 17 17 C 1.50703 * 119.99927 * 176.16261 * 15 14 13 18 18 C 1.50691 * 115.55292 * 293.54640 * 17 15 14 19 19 O 1.21292 * 119.99890 * 228.60571 * 18 17 15 20 20 N 1.34770 * 120.00533 * 48.59964 * 18 17 15 21 21 C 1.46502 * 120.00441 * 174.32477 * 20 18 17 22 22 C 1.53002 * 117.51495 * 136.28892 * 21 20 18 23 23 C 1.52996 * 60.00128 * 107.48102 * 22 21 20 24 24 C 1.53002 * 117.51414 * 79.24480 * 17 15 14 25 25 C 1.53002 * 117.49685 * 147.87366 * 17 15 14 26 26 N 1.31924 * 120.84851 * 359.46663 * 13 12 11 27 27 H 0.96997 * 119.99829 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.43717 * 359.97438 * 10 9 7 29 29 H 1.08001 * 120.66573 * 180.02562 * 11 10 9 30 30 H 1.07995 * 120.25496 * 180.26692 * 12 11 10 31 31 H 0.96999 * 119.99922 * 9.97708 * 14 13 12 32 32 H 0.97003 * 119.99861 * 354.32711 * 20 18 17 33 33 H 1.08998 * 115.54957 * 350.58903 * 21 20 18 34 34 H 1.09008 * 117.49601 * 214.96826 * 22 21 20 35 35 H 1.09001 * 117.50343 * 359.97438 * 22 21 20 36 36 H 1.09000 * 117.50170 * 252.50727 * 23 22 21 37 37 H 1.09000 * 117.49875 * 107.48621 * 23 22 21 38 38 H 1.08999 * 117.49718 * 214.97047 * 24 17 15 39 39 H 1.09000 * 117.50380 * 359.97438 * 24 17 15 40 40 H 1.09007 * 117.49860 * 359.97438 * 25 17 15 41 41 H 1.08993 * 117.50183 * 144.97796 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8828 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3008 -2.4367 -0.0016 10 6 2.0084 -3.6518 -0.0027 11 6 1.3031 -4.8416 -0.0043 12 6 -0.0830 -4.7934 0.0005 13 6 -0.7279 -3.5549 -0.0042 14 7 -2.1197 -3.5046 -0.0046 15 6 -2.7515 -2.3323 -0.2113 16 8 -2.1098 -1.3098 -0.3276 17 6 -4.2555 -2.2919 -0.2980 18 6 -4.8570 -2.9931 -1.4886 19 8 -5.6930 -2.4316 -2.1645 20 7 -4.4660 -4.2441 -1.8024 21 6 -5.1374 -4.9724 -2.8817 22 6 -4.2580 -5.7466 -3.8657 23 6 -5.0981 -6.5012 -2.8334 24 6 -5.0405 -2.3294 1.0148 25 6 -4.9588 -1.0313 0.2090 26 7 -0.0358 -2.4318 -0.0027 27 1 -0.4850 0.8400 0.0004 28 1 3.0884 -3.6561 -0.0031 29 1 1.8214 -5.7891 -0.0048 30 1 -0.6592 -5.7068 0.0038 31 1 -2.6343 -4.3133 0.1438 32 1 -3.7400 -4.6623 -1.3135 33 1 -6.0401 -4.5043 -3.2742 34 1 -4.5823 -5.7878 -4.9056 35 1 -3.1796 -5.7138 -3.7104 36 1 -4.5725 -6.9651 -1.9988 37 1 -5.9750 -7.0388 -3.1942 38 1 -5.9919 -2.8612 1.0172 39 1 -4.4692 -2.3836 1.9415 40 1 -4.3337 -0.2312 0.6057 41 1 -5.8563 -0.7088 -0.3188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:47 Heat of formation + Delta-G solvation = 45.478062 kcal Electronic energy + Delta-G solvation = -26396.032951 eV Core-core repulsion = 22664.856443 eV Total energy + Delta-G solvation = -3731.176508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.58963 -39.06291 -37.89115 -37.14130 -35.56169 -34.28094 -33.21916 -32.71080 -30.39765 -29.21011 -26.02574 -25.30944 -22.94757 -22.57642 -22.47679 -21.59554 -21.44904 -20.50642 -19.47729 -18.12429 -17.28711 -16.73250 -16.19918 -15.90257 -14.88139 -14.75841 -14.73298 -14.54157 -14.51466 -14.01778 -13.83505 -13.63189 -13.10098 -12.93864 -12.63420 -12.09178 -12.02407 -11.78654 -11.54913 -11.50446 -11.21557 -11.01778 -10.98879 -10.77734 -10.70772 -10.55385 -10.45000 -10.01055 -9.94120 -9.76412 -9.13423 -9.08727 -8.88363 -8.05733 -7.34400 -7.09245 -6.22055 -4.46899 2.30584 2.65965 2.83908 3.00553 3.15329 3.18539 3.20897 3.50126 3.57785 3.75009 3.78594 4.02281 4.55558 4.58414 4.76033 4.77870 4.81957 4.82946 4.89408 5.09469 5.42076 5.53778 5.55398 5.68486 5.77486 5.89575 5.95561 5.98268 6.04123 6.17338 6.35597 6.37745 6.54751 6.72533 6.77032 7.16681 7.32585 7.44416 7.51442 7.72791 7.92793 8.08925 8.10036 8.34374 8.65478 8.96085 9.07001 10.14644 10.40968 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.004643 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.999569 B = 6029.117504 C = 7241.651944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.659 5.659 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.422 4.422 8 H 0.084 0.916 9 C 0.270 3.730 10 C -0.301 4.301 11 C -0.036 4.036 12 C -0.356 4.356 13 C 0.370 3.630 14 N -0.663 5.663 15 C 0.511 3.489 16 O -0.389 6.389 17 C -0.198 4.198 18 C 0.568 3.432 19 O -0.530 6.530 20 N -0.699 5.699 21 C 0.079 3.921 22 C -0.193 4.193 23 C -0.188 4.188 24 C -0.141 4.141 25 C -0.111 4.111 26 N -0.473 5.473 27 H 0.273 0.727 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.393 0.607 32 H 0.401 0.599 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.901 -8.490 -0.424 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.277 5.277 2 C -0.171 4.171 3 Si 0.722 3.278 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.145 3.855 10 C -0.325 4.325 11 C -0.060 4.060 12 C -0.382 4.382 13 C 0.131 3.869 14 N -0.311 5.311 15 C 0.290 3.710 16 O -0.251 6.251 17 C -0.205 4.205 18 C 0.354 3.646 19 O -0.406 6.406 20 N -0.350 5.350 21 C -0.027 4.027 22 C -0.232 4.232 23 C -0.227 4.227 24 C -0.179 4.179 25 C -0.148 4.148 26 N -0.192 5.192 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.227 0.773 32 H 0.237 0.763 33 H 0.155 0.845 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.680 -6.257 -1.010 13.289 hybrid contribution 1.012 -1.047 0.205 1.471 sum -10.668 -7.304 -0.805 12.954 Atomic orbital electron populations 1.70291 1.05948 1.27526 1.23966 1.26175 0.95126 1.00728 0.95091 0.86427 0.80869 0.82030 0.78475 1.18562 1.19972 1.19984 1.19651 0.94174 0.89348 1.42080 0.89800 1.18380 0.87043 0.92030 0.88030 1.21642 0.98640 0.93495 1.18677 1.20561 0.93141 0.96568 0.95722 1.20460 0.94835 0.94754 1.28149 1.18546 0.82858 0.91061 0.94397 1.43402 1.05310 1.10093 1.72324 1.19270 0.86087 0.85135 0.80468 1.91159 1.63965 1.30732 1.39202 1.21696 0.94443 1.07698 0.96650 1.19164 0.81047 0.80477 0.83924 1.90675 1.33572 1.65068 1.51303 1.45400 1.37853 1.15444 1.36295 1.21604 0.98925 0.90222 0.91911 1.23450 0.99129 1.04046 0.96579 1.23389 1.03177 0.93917 1.02186 1.23092 1.00527 1.01767 0.92509 1.22979 1.01475 0.90635 0.99741 1.68634 1.07159 1.23278 1.20078 0.91543 0.88471 0.88538 0.89114 0.77273 0.76291 0.84456 0.87938 0.88100 0.88321 0.87832 0.87787 0.87197 0.86635 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.98 9.10 55.55 0.51 -17.48 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 3 Si 0.90 19.07 29.56 -169.99 -5.02 14.05 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.42 -11.41 9.14 -37.73 -0.34 -11.75 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 9 C 0.27 7.41 6.55 -85.00 -0.56 6.86 16 10 C -0.30 -7.37 9.83 -38.66 -0.38 -7.75 16 11 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.36 -7.57 9.96 -38.89 -0.39 -7.96 16 13 C 0.37 8.61 7.41 -154.97 -1.15 7.46 16 14 N -0.66 -12.32 4.79 -11.40 -0.05 -12.38 16 15 C 0.51 10.13 6.93 -10.99 -0.08 10.05 16 16 O -0.39 -9.68 12.64 5.56 0.07 -9.61 16 17 C -0.20 -3.09 2.35 -156.81 -0.37 -3.46 16 18 C 0.57 8.94 7.23 -10.99 -0.08 8.86 16 19 O -0.53 -9.67 15.96 5.55 0.09 -9.58 16 20 N -0.70 -9.10 5.52 -53.81 -0.30 -9.40 16 21 C 0.08 0.89 6.42 -67.93 -0.44 0.46 16 22 C -0.19 -1.93 10.46 -26.73 -0.28 -2.21 16 23 C -0.19 -1.58 10.45 -26.73 -0.28 -1.86 16 24 C -0.14 -1.69 9.94 -26.73 -0.27 -1.96 16 25 C -0.11 -1.58 9.56 -26.73 -0.26 -1.83 16 26 N -0.47 -12.89 5.75 -10.26 -0.06 -12.95 16 27 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 28 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.39 5.56 7.08 -40.82 -0.29 5.27 16 32 H 0.40 4.80 6.37 -40.82 -0.26 4.54 16 33 H 0.14 1.62 7.44 -51.93 -0.39 1.23 16 34 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.12 1.75 8.01 -51.92 -0.42 1.33 16 41 H 0.11 1.51 7.74 -51.93 -0.40 1.11 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -33.39 352.32 -9.92 -43.30 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -5.10 Total: 13.60 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -5.35 Total: -4.87 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.10 Total: -52.20 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.16 Total: -19.19 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.39 -9.92 -43.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.783 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds