Wall clock time and date at job start Tue Mar 31 2020 10:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86796 * 120.00111 * 2 1 4 4 H 1.48504 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47334 * 300.00276 * 3 2 1 6 6 H 1.48503 * 109.47261 * 60.00377 * 3 2 1 7 7 C 1.40034 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.41337 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.40612 * 119.78393 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.12888 * 180.02562 * 10 9 7 12 12 C 1.38696 * 118.66830 * 359.74796 * 11 10 9 13 13 C 1.39641 * 119.49491 * 0.52213 * 12 11 10 14 14 N 1.39269 * 119.57588 * 179.74774 * 13 12 11 15 15 C 1.34771 * 120.00011 * 189.97704 * 14 13 12 16 16 O 1.21277 * 119.99953 * 356.16801 * 15 14 13 17 17 C 1.50703 * 119.99927 * 176.16261 * 15 14 13 18 18 C 1.50691 * 115.55292 * 293.54640 * 17 15 14 19 19 O 1.21292 * 119.99890 * 228.60571 * 18 17 15 20 20 N 1.34770 * 120.00533 * 48.59964 * 18 17 15 21 21 C 1.46502 * 120.00441 * 174.32477 * 20 18 17 22 22 C 1.53002 * 117.51495 * 136.28892 * 21 20 18 23 23 C 1.52996 * 60.00128 * 107.48102 * 22 21 20 24 24 C 1.53002 * 117.51414 * 79.24480 * 17 15 14 25 25 C 1.53002 * 117.49685 * 147.87366 * 17 15 14 26 26 N 1.31924 * 120.84851 * 359.46663 * 13 12 11 27 27 H 0.96997 * 119.99829 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.43717 * 359.97438 * 10 9 7 29 29 H 1.08001 * 120.66573 * 180.02562 * 11 10 9 30 30 H 1.07995 * 120.25496 * 180.26692 * 12 11 10 31 31 H 0.96999 * 119.99922 * 9.97708 * 14 13 12 32 32 H 0.97003 * 119.99861 * 354.32711 * 20 18 17 33 33 H 1.08998 * 115.54957 * 350.58903 * 21 20 18 34 34 H 1.09008 * 117.49601 * 214.96826 * 22 21 20 35 35 H 1.09001 * 117.50343 * 359.97438 * 22 21 20 36 36 H 1.09000 * 117.50170 * 252.50727 * 23 22 21 37 37 H 1.09000 * 117.49875 * 107.48621 * 23 22 21 38 38 H 1.08999 * 117.49718 * 214.97047 * 24 17 15 39 39 H 1.09000 * 117.50380 * 359.97438 * 24 17 15 40 40 H 1.09007 * 117.49860 * 359.97438 * 25 17 15 41 41 H 1.08993 * 117.50183 * 144.97796 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8828 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3008 -2.4367 -0.0016 10 6 2.0084 -3.6518 -0.0027 11 6 1.3031 -4.8416 -0.0043 12 6 -0.0830 -4.7934 0.0005 13 6 -0.7279 -3.5549 -0.0042 14 7 -2.1197 -3.5046 -0.0046 15 6 -2.7515 -2.3323 -0.2113 16 8 -2.1098 -1.3098 -0.3276 17 6 -4.2555 -2.2919 -0.2980 18 6 -4.8570 -2.9931 -1.4886 19 8 -5.6930 -2.4316 -2.1645 20 7 -4.4660 -4.2441 -1.8024 21 6 -5.1374 -4.9724 -2.8817 22 6 -4.2580 -5.7466 -3.8657 23 6 -5.0981 -6.5012 -2.8334 24 6 -5.0405 -2.3294 1.0148 25 6 -4.9588 -1.0313 0.2090 26 7 -0.0358 -2.4318 -0.0027 27 1 -0.4850 0.8400 0.0004 28 1 3.0884 -3.6561 -0.0031 29 1 1.8214 -5.7891 -0.0048 30 1 -0.6592 -5.7068 0.0038 31 1 -2.6343 -4.3133 0.1438 32 1 -3.7400 -4.6623 -1.3135 33 1 -6.0401 -4.5043 -3.2742 34 1 -4.5823 -5.7878 -4.9056 35 1 -3.1796 -5.7138 -3.7104 36 1 -4.5725 -6.9651 -1.9988 37 1 -5.9750 -7.0388 -3.1942 38 1 -5.9919 -2.8612 1.0172 39 1 -4.4692 -2.3836 1.9415 40 1 -4.3337 -0.2312 0.6057 41 1 -5.8563 -0.7088 -0.3188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:46 Heat of formation + Delta-G solvation = 24.164644 kcal Electronic energy + Delta-G solvation = -26396.957170 eV Core-core repulsion = 22664.856443 eV Total energy + Delta-G solvation = -3732.100727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90554 -40.57577 -39.40706 -38.25306 -36.82684 -36.01948 -34.96141 -33.85455 -32.24778 -31.02136 -27.71173 -26.76098 -24.41466 -23.54313 -23.32874 -23.28001 -22.67991 -21.92205 -20.88427 -19.71217 -18.83901 -18.08565 -17.64218 -17.15002 -16.50343 -16.28630 -16.07915 -15.99566 -15.55644 -15.53797 -15.28805 -15.20804 -14.72985 -14.16846 -13.91462 -13.76817 -13.67512 -12.93290 -12.74795 -12.57907 -12.56812 -12.55968 -12.41097 -12.35435 -12.23519 -11.78458 -11.70633 -11.59236 -11.44493 -11.16303 -10.92420 -10.69162 -9.92421 -9.86687 -9.17343 -8.89485 -8.08990 -6.43660 0.84045 1.11921 1.24379 1.39033 1.49640 1.53230 1.72691 1.98239 2.22630 2.24705 2.52180 2.95051 2.96401 3.44672 3.60536 3.63802 3.76332 3.86335 4.02534 4.03279 4.06650 4.36284 4.56644 4.58264 4.71770 4.74199 4.76127 4.85432 4.88414 4.95323 5.01131 5.01351 5.09518 5.19712 5.25620 5.38203 5.65993 5.77625 5.91446 6.11239 6.24206 6.33389 6.61314 6.79257 6.94508 7.04667 7.49858 8.30341 8.53431 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.004643 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.999569 B = 6029.117504 C = 7241.651944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.014 3.986 3 Si 0.973 3.027 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.465 4.465 8 H 0.086 0.914 9 C 0.237 3.763 10 C -0.325 4.325 11 C -0.034 4.034 12 C -0.338 4.338 13 C 0.347 3.653 14 N -0.646 5.646 15 C 0.510 3.490 16 O -0.446 6.446 17 C -0.210 4.210 18 C 0.567 3.433 19 O -0.562 6.562 20 N -0.688 5.688 21 C 0.049 3.951 22 C -0.199 4.199 23 C -0.156 4.156 24 C -0.101 4.101 25 C -0.121 4.121 26 N -0.508 5.508 27 H 0.270 0.730 28 H 0.104 0.896 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.416 0.584 32 H 0.406 0.594 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.938 -11.212 0.007 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.211 4.211 3 Si 0.794 3.206 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.496 4.496 8 H 0.104 0.896 9 C 0.112 3.888 10 C -0.348 4.348 11 C -0.058 4.058 12 C -0.364 4.364 13 C 0.109 3.891 14 N -0.296 5.296 15 C 0.291 3.709 16 O -0.311 6.311 17 C -0.217 4.217 18 C 0.353 3.647 19 O -0.441 6.441 20 N -0.338 5.338 21 C -0.056 4.056 22 C -0.237 4.237 23 C -0.194 4.194 24 C -0.138 4.138 25 C -0.159 4.159 26 N -0.227 5.227 27 H 0.081 0.919 28 H 0.122 0.878 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.254 0.746 32 H 0.243 0.757 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.737 -9.077 -0.571 15.651 hybrid contribution 1.279 -0.445 0.046 1.355 sum -11.457 -9.522 -0.525 14.907 Atomic orbital electron populations 1.70480 1.07381 1.27961 1.25644 1.26991 0.95940 1.03965 0.94245 0.85295 0.79669 0.77238 0.78364 1.17669 1.19961 1.19351 1.19939 0.94480 0.90484 1.44718 0.89630 1.18841 0.87846 0.93407 0.88724 1.21824 0.99262 0.93850 1.19887 1.21052 0.93609 0.97304 0.93822 1.20982 0.95144 0.95629 1.24614 1.19055 0.84605 0.91229 0.94212 1.43278 1.03853 1.11044 1.71473 1.19899 0.87670 0.84491 0.78793 1.91157 1.65707 1.32635 1.41564 1.21498 0.91626 1.09519 0.99081 1.19130 0.80823 0.81100 0.83615 1.90659 1.35288 1.65969 1.52139 1.45339 1.37519 1.14635 1.36333 1.21787 0.99150 0.92148 0.92499 1.23499 0.98505 1.04224 0.97494 1.23499 1.03189 0.91390 1.01299 1.23269 1.00783 0.99114 0.90669 1.22995 1.01229 0.90875 1.00787 1.68580 1.07468 1.25640 1.21008 0.91946 0.87806 0.84354 0.84506 0.74607 0.75713 0.85372 0.86884 0.89224 0.87068 0.85623 0.84595 0.86397 0.88298 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -40.00 9.10 21.84 0.20 -39.80 16 2 C 0.01 0.75 5.50 85.29 0.47 1.22 16 3 Si 0.97 40.87 29.56 68.60 2.03 42.89 16 4 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.47 -26.30 9.14 23.47 0.21 -26.08 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 9 C 0.24 13.45 6.55 40.21 0.26 13.72 16 10 C -0.33 -15.95 9.83 22.87 0.22 -15.72 16 11 C -0.03 -1.39 10.15 22.40 0.23 -1.16 16 12 C -0.34 -13.40 9.96 22.72 0.23 -13.17 16 13 C 0.35 15.96 7.41 133.24 0.99 16.95 16 14 N -0.65 -23.38 4.79 -308.38 -1.48 -24.86 16 15 C 0.51 20.42 6.93 87.66 0.61 21.02 16 16 O -0.45 -23.20 12.64 -3.02 -0.04 -23.24 16 17 C -0.21 -6.44 2.35 -53.67 -0.13 -6.57 16 18 C 0.57 17.43 7.23 87.66 0.63 18.06 16 19 O -0.56 -20.43 15.96 -3.07 -0.05 -20.48 16 20 N -0.69 -16.81 5.52 -442.53 -2.44 -19.25 16 21 C 0.05 1.02 6.42 44.99 0.29 1.31 16 22 C -0.20 -3.55 10.46 30.59 0.32 -3.23 16 23 C -0.16 -2.07 10.45 30.59 0.32 -1.75 16 24 C -0.10 -2.20 9.94 30.60 0.30 -1.89 16 25 C -0.12 -3.45 9.56 30.60 0.29 -3.15 16 26 N -0.51 -28.44 5.75 -186.36 -1.07 -29.51 16 27 H 0.27 14.67 8.29 -92.71 -0.77 13.90 16 28 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 29 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 30 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 31 H 0.42 10.69 7.08 -92.71 -0.66 10.03 16 32 H 0.41 8.77 6.37 -92.71 -0.59 8.18 16 33 H 0.13 2.91 7.44 -2.39 -0.02 2.89 16 34 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.10 3.14 8.01 -2.38 -0.02 3.12 16 41 H 0.12 3.19 7.74 -2.39 -0.02 3.17 16 Total: -1.00 -77.64 352.32 2.24 -75.40 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -0.16 Total: 39.31 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.25 Total: -0.46 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -4.79 Total: -113.42 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.09 Total: -43.72 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -77.64 2.24 -75.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.562 kcal (2) G-P(sol) polarization free energy of solvation -77.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds