Wall clock time and date at job start Tue Mar 31 2020 10:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00174 * 2 1 4 4 H 1.48500 * 109.47804 * 275.00128 * 3 2 1 5 5 H 1.48505 * 109.47007 * 35.00471 * 3 2 1 6 6 H 1.48507 * 109.46935 * 155.00116 * 3 2 1 7 7 C 1.40030 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00241 * 174.69868 * 7 2 1 9 9 C 1.41342 * 119.99668 * 354.69877 * 7 2 1 10 10 C 1.40631 * 119.78435 * 174.69515 * 9 7 2 11 11 C 1.38301 * 119.13587 * 179.71985 * 10 9 7 12 12 C 1.38697 * 118.66935 * 359.97438 * 11 10 9 13 13 C 1.39667 * 119.49499 * 0.02562 * 12 11 10 14 14 N 1.39114 * 119.57785 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00141 * 339.03554 * 14 13 12 16 16 O 1.21353 * 119.99832 * 3.75956 * 15 14 13 17 17 C 1.49372 * 120.00147 * 183.75210 * 15 14 13 18 18 O 1.21363 * 120.00040 * 0.02562 * 17 15 14 19 19 N 1.34778 * 120.00096 * 180.02562 * 17 15 14 20 20 C 1.46498 * 119.99755 * 180.02562 * 19 17 15 21 21 H 1.08997 * 109.64111 * 35.41981 * 20 19 17 22 22 C 1.53025 * 109.64084 * 274.99529 * 20 19 17 23 23 C 1.50072 * 110.14635 * 190.88051 * 22 20 19 24 24 C 1.29443 * 124.07106 * 17.13703 * 23 22 20 25 25 C 1.50067 * 124.07918 * 359.50344 * 24 23 22 26 26 C 1.53029 * 110.14001 * 17.17320 * 25 24 23 27 27 N 1.31960 * 120.84250 * 359.97438 * 13 12 11 28 28 H 0.97001 * 119.99418 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.43182 * 359.69939 * 10 9 7 30 30 H 1.07998 * 120.66677 * 179.97438 * 11 10 9 31 31 H 1.08005 * 120.25509 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00160 * 159.04346 * 14 13 12 33 33 H 0.96999 * 119.99816 * 0.02562 * 19 17 15 34 34 H 1.09002 * 109.36177 * 311.09021 * 22 20 19 35 35 H 1.09002 * 109.35708 * 70.81927 * 22 20 19 36 36 H 1.07992 * 117.96183 * 197.11202 * 23 22 20 37 37 H 1.08006 * 117.95594 * 179.52818 * 24 23 22 38 38 H 1.08999 * 109.35362 * 137.36190 * 25 24 23 39 39 H 1.08998 * 109.36068 * 257.08117 * 25 24 23 40 40 H 1.09001 * 109.63724 * 190.85850 * 26 25 24 41 41 H 1.09000 * 109.66273 * 70.21596 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3833 2.1075 -1.3947 5 1 1.4958 2.6198 0.8032 6 1 3.5879 1.4118 0.5917 7 6 2.0076 -1.2127 -0.0005 8 1 3.0840 -1.2147 -0.0870 9 6 1.3053 -2.4342 0.1120 10 6 1.9994 -3.6520 -0.0011 11 6 1.2999 -4.8392 0.1170 12 6 -0.0672 -4.7862 0.3444 13 6 -0.6996 -3.5452 0.4472 14 7 -2.0709 -3.4900 0.6747 15 6 -2.8460 -4.5530 0.3819 16 8 -2.3398 -5.5817 -0.0159 17 6 -4.3279 -4.4651 0.5471 18 8 -4.8341 -3.4362 0.9446 19 7 -5.1029 -5.5283 0.2547 20 6 -6.5564 -5.4417 0.4162 21 1 -6.8945 -4.4381 0.1584 22 6 -6.9323 -5.7547 1.8662 23 6 -8.4176 -5.9304 1.9887 24 6 -9.2076 -6.1450 0.9859 25 6 -8.7500 -6.2375 -0.4403 26 6 -7.2385 -6.4704 -0.4946 27 7 -0.0129 -2.4243 0.3313 28 1 -0.4849 0.8401 0.0004 29 1 3.0647 -3.6600 -0.1783 30 1 1.8081 -5.7885 0.0338 31 1 -0.6387 -5.6977 0.4404 32 1 -2.4694 -2.6864 1.0441 33 1 -4.6982 -6.3507 -0.0626 34 1 -6.4329 -6.6716 2.1791 35 1 -6.6137 -4.9328 2.5074 36 1 -8.8545 -5.8747 2.9747 37 1 -10.2617 -6.2646 1.1884 38 1 -9.2609 -7.0661 -0.9306 39 1 -8.9895 -5.3085 -0.9576 40 1 -6.8851 -6.3449 -1.5181 41 1 -7.0098 -7.4774 -0.1456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889941170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:38 Heat of formation + Delta-G solvation = -11.746763 kcal Electronic energy + Delta-G solvation = -25121.919133 eV Core-core repulsion = 21388.261171 eV Total energy + Delta-G solvation = -3733.657963 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75245 -39.41384 -38.19897 -37.50527 -34.91386 -34.04666 -33.27291 -31.15198 -30.48659 -29.98092 -29.33023 -25.92850 -24.88281 -23.56649 -22.35608 -21.67522 -21.14551 -19.97045 -18.73361 -17.88570 -17.58634 -16.97168 -16.25784 -16.07337 -15.68196 -15.35954 -14.83674 -14.54822 -14.31730 -14.13764 -13.80679 -13.72596 -13.51490 -13.26096 -12.92938 -12.71954 -12.63921 -12.33707 -12.03687 -11.70787 -11.37382 -11.29092 -11.07501 -11.03403 -10.89253 -10.69613 -10.57584 -10.17931 -9.93445 -9.38172 -9.25774 -9.22797 -8.96000 -8.12588 -7.74211 -7.23956 -6.48289 -4.54821 1.49632 1.99841 2.45043 2.72768 2.93378 3.08604 3.11792 3.20137 3.53926 3.82443 3.93394 4.35877 4.41801 4.62353 4.69152 4.73495 4.91321 5.00430 5.10417 5.22028 5.29137 5.50532 5.56091 5.73812 5.80892 5.83597 5.89239 6.07898 6.17489 6.30167 6.34072 6.62692 6.64334 6.67223 6.73740 7.07059 7.13011 7.34257 7.40910 7.66922 7.80024 7.91443 8.02639 8.21109 8.41214 8.65006 8.88802 9.96113 10.27518 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.002714 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.695106 B =10313.445366 C =11211.812442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.071 3.929 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.433 4.433 8 H 0.087 0.913 9 C 0.278 3.722 10 C -0.282 4.282 11 C -0.050 4.050 12 C -0.314 4.314 13 C 0.349 3.651 14 N -0.610 5.610 15 C 0.504 3.496 16 O -0.504 6.504 17 C 0.514 3.486 18 O -0.515 6.515 19 N -0.701 5.701 20 C 0.144 3.856 21 H 0.095 0.905 22 C -0.106 4.106 23 C -0.145 4.145 24 C -0.163 4.163 25 C -0.087 4.087 26 C -0.129 4.129 27 N -0.504 5.504 28 H 0.274 0.726 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.419 0.581 33 H 0.413 0.587 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.553 -9.825 0.953 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.342 5.342 2 C -0.155 4.155 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.152 3.848 10 C -0.305 4.305 11 C -0.075 4.075 12 C -0.338 4.338 13 C 0.115 3.885 14 N -0.255 5.255 15 C 0.284 3.716 16 O -0.380 6.380 17 C 0.295 3.705 18 O -0.389 6.389 19 N -0.354 5.354 20 C 0.040 3.960 21 H 0.113 0.887 22 C -0.144 4.144 23 C -0.164 4.164 24 C -0.181 4.181 25 C -0.124 4.124 26 C -0.167 4.167 27 N -0.222 5.222 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.256 0.744 33 H 0.249 0.751 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.195 -8.843 1.014 18.480 hybrid contribution 0.709 0.033 0.013 0.710 sum -15.485 -8.810 1.027 17.846 Atomic orbital electron populations 1.70069 1.07279 1.27942 1.28880 1.26054 0.94884 1.01129 0.93385 0.86305 0.80589 0.80861 0.79011 1.19541 1.20064 1.18460 1.19580 0.94599 0.89263 1.43061 0.89512 1.18189 0.86279 0.92210 0.88158 1.21768 0.99438 0.93452 1.15805 1.20834 0.93648 0.96745 0.96272 1.21774 0.95315 0.97452 1.19306 1.18435 0.82524 0.91355 0.96191 1.42854 1.06675 1.16983 1.59017 1.19881 0.87287 0.84488 0.79904 1.90639 1.73630 1.29428 1.44292 1.20197 0.87928 0.83985 0.78415 1.90776 1.75036 1.29328 1.43790 1.45782 1.06954 1.15947 1.66742 1.21115 0.78541 1.01139 0.95204 0.88690 1.20894 0.93793 1.02787 0.96933 1.21986 0.94941 1.00489 0.98947 1.22052 0.99525 1.01827 0.94681 1.20405 0.94651 1.02551 0.94791 1.21911 0.95490 0.99159 1.00103 1.67985 1.08642 1.24792 1.20792 0.91528 0.88032 0.88104 0.84557 0.74392 0.75075 0.90234 0.90089 0.87618 0.87748 0.90456 0.90463 0.90511 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.98 11.52 55.55 0.64 -18.34 16 2 C 0.07 1.78 5.48 -17.34 -0.10 1.69 16 3 Si 0.91 18.48 29.56 -169.99 -5.03 13.45 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.43 -11.48 9.13 -37.73 -0.34 -11.83 16 8 H 0.09 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.28 7.61 6.53 -85.00 -0.56 7.06 16 10 C -0.28 -6.96 9.83 -38.66 -0.38 -7.34 16 11 C -0.05 -1.16 10.15 -39.39 -0.40 -1.56 16 12 C -0.31 -7.48 8.90 -38.88 -0.35 -7.83 16 13 C 0.35 8.68 7.50 -155.08 -1.16 7.51 16 14 N -0.61 -12.92 5.40 -11.84 -0.06 -12.98 16 15 C 0.50 9.36 7.78 -11.62 -0.09 9.27 16 16 O -0.50 -9.89 13.13 5.49 0.07 -9.82 16 17 C 0.51 8.03 7.85 -11.62 -0.09 7.94 16 18 O -0.51 -9.04 16.15 5.49 0.09 -8.96 16 19 N -0.70 -8.25 5.09 -54.05 -0.28 -8.53 16 20 C 0.14 1.44 2.50 -67.71 -0.17 1.27 16 21 H 0.10 1.10 7.59 -51.93 -0.39 0.71 16 22 C -0.11 -1.01 5.70 -28.17 -0.16 -1.17 16 23 C -0.15 -1.19 9.80 -35.90 -0.35 -1.54 16 24 C -0.16 -1.19 9.80 -35.90 -0.35 -1.55 16 25 C -0.09 -0.57 6.12 -28.17 -0.17 -0.75 16 26 C -0.13 -0.96 5.49 -26.51 -0.15 -1.10 16 27 N -0.50 -13.82 7.95 -10.28 -0.08 -13.90 16 28 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 29 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 30 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.14 3.12 5.16 -52.93 -0.27 2.85 16 32 H 0.42 8.60 8.30 -40.82 -0.34 8.26 16 33 H 0.41 4.31 8.07 -40.82 -0.33 3.98 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.11 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.10 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 LS Contribution 349.04 15.07 5.26 5.26 Total: -1.00 -30.62 349.04 -9.31 -39.93 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -5.11 Total: 13.79 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -4.82 Total: 0.08 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.22 Total: -53.75 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.16 Total: -18.77 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.62 -9.31 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889941170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.184 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds