Wall clock time and date at job start Tue Mar 31 2020 10:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00174 * 2 1 4 4 H 1.48500 * 109.47804 * 275.00128 * 3 2 1 5 5 H 1.48505 * 109.47007 * 35.00471 * 3 2 1 6 6 H 1.48507 * 109.46935 * 155.00116 * 3 2 1 7 7 C 1.40030 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00241 * 174.69868 * 7 2 1 9 9 C 1.41342 * 119.99668 * 354.69877 * 7 2 1 10 10 C 1.40631 * 119.78435 * 174.69515 * 9 7 2 11 11 C 1.38301 * 119.13587 * 179.71985 * 10 9 7 12 12 C 1.38697 * 118.66935 * 359.97438 * 11 10 9 13 13 C 1.39667 * 119.49499 * 0.02562 * 12 11 10 14 14 N 1.39114 * 119.57785 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00141 * 339.03554 * 14 13 12 16 16 O 1.21353 * 119.99832 * 3.75956 * 15 14 13 17 17 C 1.49372 * 120.00147 * 183.75210 * 15 14 13 18 18 O 1.21363 * 120.00040 * 0.02562 * 17 15 14 19 19 N 1.34778 * 120.00096 * 180.02562 * 17 15 14 20 20 C 1.46498 * 119.99755 * 180.02562 * 19 17 15 21 21 H 1.08997 * 109.64111 * 35.41981 * 20 19 17 22 22 C 1.53025 * 109.64084 * 274.99529 * 20 19 17 23 23 C 1.50072 * 110.14635 * 190.88051 * 22 20 19 24 24 C 1.29443 * 124.07106 * 17.13703 * 23 22 20 25 25 C 1.50067 * 124.07918 * 359.50344 * 24 23 22 26 26 C 1.53029 * 110.14001 * 17.17320 * 25 24 23 27 27 N 1.31960 * 120.84250 * 359.97438 * 13 12 11 28 28 H 0.97001 * 119.99418 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.43182 * 359.69939 * 10 9 7 30 30 H 1.07998 * 120.66677 * 179.97438 * 11 10 9 31 31 H 1.08005 * 120.25509 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00160 * 159.04346 * 14 13 12 33 33 H 0.96999 * 119.99816 * 0.02562 * 19 17 15 34 34 H 1.09002 * 109.36177 * 311.09021 * 22 20 19 35 35 H 1.09002 * 109.35708 * 70.81927 * 22 20 19 36 36 H 1.07992 * 117.96183 * 197.11202 * 23 22 20 37 37 H 1.08006 * 117.95594 * 179.52818 * 24 23 22 38 38 H 1.08999 * 109.35362 * 137.36190 * 25 24 23 39 39 H 1.08998 * 109.36068 * 257.08117 * 25 24 23 40 40 H 1.09001 * 109.63724 * 190.85850 * 26 25 24 41 41 H 1.09000 * 109.66273 * 70.21596 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3833 2.1075 -1.3947 5 1 1.4958 2.6198 0.8032 6 1 3.5879 1.4118 0.5917 7 6 2.0076 -1.2127 -0.0005 8 1 3.0840 -1.2147 -0.0870 9 6 1.3053 -2.4342 0.1120 10 6 1.9994 -3.6520 -0.0011 11 6 1.2999 -4.8392 0.1170 12 6 -0.0672 -4.7862 0.3444 13 6 -0.6996 -3.5452 0.4472 14 7 -2.0709 -3.4900 0.6747 15 6 -2.8460 -4.5530 0.3819 16 8 -2.3398 -5.5817 -0.0159 17 6 -4.3279 -4.4651 0.5471 18 8 -4.8341 -3.4362 0.9446 19 7 -5.1029 -5.5283 0.2547 20 6 -6.5564 -5.4417 0.4162 21 1 -6.8945 -4.4381 0.1584 22 6 -6.9323 -5.7547 1.8662 23 6 -8.4176 -5.9304 1.9887 24 6 -9.2076 -6.1450 0.9859 25 6 -8.7500 -6.2375 -0.4403 26 6 -7.2385 -6.4704 -0.4946 27 7 -0.0129 -2.4243 0.3313 28 1 -0.4849 0.8401 0.0004 29 1 3.0647 -3.6600 -0.1783 30 1 1.8081 -5.7885 0.0338 31 1 -0.6387 -5.6977 0.4404 32 1 -2.4694 -2.6864 1.0441 33 1 -4.6982 -6.3507 -0.0626 34 1 -6.4329 -6.6716 2.1791 35 1 -6.6137 -4.9328 2.5074 36 1 -8.8545 -5.8747 2.9747 37 1 -10.2617 -6.2646 1.1884 38 1 -9.2609 -7.0661 -0.9306 39 1 -8.9895 -5.3085 -0.9576 40 1 -6.8851 -6.3449 -1.5181 41 1 -7.0098 -7.4774 -0.1456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889941170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:37 Heat of formation + Delta-G solvation = -30.961995 kcal Electronic energy + Delta-G solvation = -25122.752368 eV Core-core repulsion = 21388.261171 eV Total energy + Delta-G solvation = -3734.491198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.16565 -40.74001 -39.54673 -38.90119 -36.40580 -35.41721 -34.99850 -32.39195 -31.76971 -31.33860 -30.70104 -27.71813 -26.36245 -24.34267 -23.60937 -23.41453 -22.48442 -21.42530 -20.08082 -19.38683 -18.71987 -18.28526 -17.62708 -17.40117 -17.09951 -16.59213 -16.43937 -16.24646 -15.66815 -15.52157 -15.08777 -14.71636 -14.57632 -14.42828 -14.28052 -14.07897 -13.82878 -13.42482 -13.29948 -13.23691 -12.95252 -12.74418 -12.62917 -12.33612 -11.97754 -11.89045 -11.76694 -11.67935 -11.51519 -11.07602 -10.53876 -10.34625 -10.04313 -9.87887 -9.67743 -9.12511 -8.36338 -6.53344 0.02784 0.89174 1.09643 1.18244 1.40531 1.42073 1.53294 1.57517 2.04897 2.22977 2.48734 2.83884 3.24845 3.67307 3.75818 3.87249 3.97490 4.21293 4.29881 4.38406 4.41654 4.52242 4.60765 4.64554 4.80192 4.82745 4.85428 4.87747 4.93896 5.05267 5.14291 5.20316 5.21140 5.32307 5.50818 5.55288 5.73462 5.80229 5.90628 6.03547 6.09515 6.19020 6.34574 6.63754 6.73071 6.81916 6.95337 8.03564 8.42145 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.002714 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.695106 B =10313.445366 C =11211.812442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.025 3.975 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.464 4.464 8 H 0.096 0.904 9 C 0.243 3.757 10 C -0.297 4.297 11 C -0.047 4.047 12 C -0.321 4.321 13 C 0.336 3.664 14 N -0.617 5.617 15 C 0.507 3.493 16 O -0.512 6.512 17 C 0.523 3.477 18 O -0.537 6.537 19 N -0.678 5.678 20 C 0.140 3.860 21 H 0.079 0.921 22 C -0.103 4.103 23 C -0.163 4.163 24 C -0.155 4.155 25 C -0.088 4.088 26 C -0.123 4.123 27 N -0.535 5.535 28 H 0.280 0.720 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.419 0.581 33 H 0.422 0.578 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.381 -10.800 0.479 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.495 4.495 8 H 0.114 0.886 9 C 0.117 3.883 10 C -0.320 4.320 11 C -0.071 4.071 12 C -0.346 4.346 13 C 0.102 3.898 14 N -0.262 5.262 15 C 0.289 3.711 16 O -0.388 6.388 17 C 0.302 3.698 18 O -0.414 6.414 19 N -0.331 5.331 20 C 0.037 3.963 21 H 0.097 0.903 22 C -0.141 4.141 23 C -0.181 4.181 24 C -0.173 4.173 25 C -0.125 4.125 26 C -0.161 4.161 27 N -0.255 5.255 28 H 0.090 0.910 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.256 0.744 33 H 0.260 0.740 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.057 -9.890 0.530 19.724 hybrid contribution 0.864 0.189 0.140 0.896 sum -16.193 -9.700 0.670 18.888 Atomic orbital electron populations 1.70169 1.09003 1.29270 1.29501 1.27007 0.95701 1.04667 0.92312 0.85093 0.79136 0.75611 0.79235 1.18795 1.19495 1.17676 1.19977 0.95268 0.90105 1.44185 0.88624 1.18721 0.86908 0.93745 0.88928 1.21974 1.00368 0.93297 1.16366 1.21246 0.93443 0.97863 0.94570 1.22049 0.95972 0.97411 1.19134 1.18801 0.83885 0.91377 0.95758 1.42900 1.05750 1.17873 1.59717 1.20415 0.88513 0.83518 0.78696 1.90600 1.74289 1.29526 1.44349 1.19633 0.86482 0.84702 0.78958 1.90778 1.74802 1.30418 1.45413 1.45778 1.07642 1.14983 1.64697 1.21325 0.77004 1.01440 0.96529 0.90278 1.20817 0.95144 1.02196 0.95903 1.21988 0.94083 1.02198 0.99872 1.22290 1.00234 1.00076 0.94735 1.20485 0.93951 1.03540 0.94572 1.21920 0.95850 0.98649 0.99652 1.67978 1.09180 1.26148 1.22148 0.90988 0.86396 0.84360 0.83508 0.74417 0.73986 0.89681 0.92241 0.86905 0.86149 0.88347 0.90272 0.89890 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.95 11.52 21.84 0.25 -40.70 16 2 C 0.02 1.27 5.48 85.29 0.47 1.74 16 3 Si 0.99 38.04 29.56 68.60 2.03 40.07 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.46 -25.06 9.13 23.47 0.21 -24.84 16 8 H 0.10 4.77 7.85 -2.91 -0.02 4.75 16 9 C 0.24 13.65 6.53 40.22 0.26 13.92 16 10 C -0.30 -14.74 9.83 22.87 0.22 -14.51 16 11 C -0.05 -2.13 10.15 22.39 0.23 -1.90 16 12 C -0.32 -15.27 8.90 22.72 0.20 -15.07 16 13 C 0.34 17.08 7.50 133.29 1.00 18.08 16 14 N -0.62 -26.84 5.40 -309.72 -1.67 -28.51 16 15 C 0.51 18.94 7.78 87.24 0.68 19.62 16 16 O -0.51 -19.80 13.13 -3.26 -0.04 -19.84 16 17 C 0.52 16.32 7.85 87.24 0.69 17.00 16 18 O -0.54 -19.22 16.15 -3.29 -0.05 -19.27 16 19 N -0.68 -15.33 5.09 -443.26 -2.26 -17.59 16 20 C 0.14 2.66 2.50 45.13 0.11 2.77 16 21 H 0.08 1.80 7.59 -2.39 -0.02 1.78 16 22 C -0.10 -1.88 5.70 29.66 0.17 -1.71 16 23 C -0.16 -2.44 9.80 27.04 0.27 -2.18 16 24 C -0.16 -1.91 9.80 27.04 0.27 -1.64 16 25 C -0.09 -0.93 6.12 29.66 0.18 -0.75 16 26 C -0.12 -1.53 5.49 30.74 0.17 -1.36 16 27 N -0.54 -30.31 7.95 -186.43 -1.48 -31.79 16 28 H 0.28 13.71 8.29 -92.71 -0.77 12.94 16 29 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 30 H 0.14 5.10 8.06 -2.91 -0.02 5.08 16 31 H 0.15 6.61 5.16 -10.05 -0.05 6.56 16 32 H 0.42 17.96 8.30 -92.71 -0.77 17.19 16 33 H 0.42 8.13 8.07 -92.71 -0.75 7.38 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.11 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.12 1.12 8.06 -2.91 -0.02 1.09 16 38 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 Total: -1.00 -67.37 349.04 1.43 -65.94 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -0.47 Total: 42.53 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.13 Total: 9.17 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -5.16 Total: -118.59 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.10 Total: -39.11 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -67.37 1.43 -65.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889941170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.977 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds