Wall clock time and date at job start Tue Mar 31 2020 10:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 119.99762 * 2 1 4 4 H 1.48498 * 109.47117 * 270.00111 * 3 2 1 5 5 H 1.48498 * 109.47572 * 30.00493 * 3 2 1 6 6 H 1.48504 * 109.46785 * 150.00539 * 3 2 1 7 7 C 1.40030 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 C 1.41339 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.40630 * 119.78290 * 179.97438 * 9 7 2 11 11 C 1.38310 * 119.13042 * 180.02562 * 10 9 7 12 12 C 1.38692 * 118.67310 * 0.28103 * 11 10 9 13 13 C 1.39667 * 119.49068 * 359.44699 * 12 11 10 14 14 N 1.39120 * 119.57436 * 180.25474 * 13 12 11 15 15 C 1.34775 * 119.99617 * 174.61182 * 14 13 12 16 16 O 1.21352 * 120.00331 * 5.14644 * 15 14 13 17 17 C 1.49369 * 119.99972 * 185.14856 * 15 14 13 18 18 O 1.21362 * 119.99698 * 359.97438 * 17 15 14 19 19 N 1.34770 * 120.00341 * 179.97438 * 17 15 14 20 20 C 1.46504 * 120.00318 * 179.97438 * 19 17 15 21 21 H 1.09002 * 109.63588 * 325.00125 * 20 19 17 22 22 C 1.53022 * 109.64239 * 85.41941 * 20 19 17 23 23 C 1.50062 * 110.14981 * 169.12178 * 22 20 19 24 24 C 1.29442 * 124.07286 * 342.87112 * 23 22 20 25 25 C 1.50067 * 124.07684 * 0.48857 * 24 23 22 26 26 C 1.52972 * 110.28865 * 342.97988 * 25 24 23 27 27 N 1.31964 * 120.84840 * 0.56519 * 13 12 11 28 28 H 0.97002 * 119.99993 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.43667 * 0.04778 * 10 9 7 30 30 H 1.08004 * 120.65715 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.25382 * 179.70048 * 12 11 10 32 32 H 0.96992 * 120.00307 * 354.61636 * 14 13 12 33 33 H 0.97002 * 119.99841 * 0.02562 * 19 17 15 34 34 H 1.09001 * 109.35605 * 289.33190 * 22 20 19 35 35 H 1.08998 * 109.35653 * 49.05166 * 22 20 19 36 36 H 1.08002 * 117.96365 * 162.89004 * 23 22 20 37 37 H 1.08006 * 117.96608 * 180.46700 * 24 23 22 38 38 H 1.09003 * 109.35990 * 103.05726 * 25 24 23 39 39 H 1.09003 * 109.35809 * 222.77686 * 25 24 23 40 40 H 1.08996 * 109.47118 * 289.53802 * 26 25 24 41 41 H 1.08997 * 109.79352 * 168.91788 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0085 -3.6520 -0.0016 11 6 1.3034 -4.8418 -0.0022 12 6 -0.0827 -4.7939 -0.0076 13 6 -0.7279 -3.5552 -0.0006 14 7 -2.1182 -3.5051 -0.0006 15 6 -2.7497 -2.3202 0.1157 16 8 -2.1091 -1.2896 0.1264 17 6 -4.2383 -2.2754 0.2315 18 8 -4.8790 -3.3061 0.2203 19 7 -4.8698 -1.0906 0.3483 20 6 -6.3299 -1.0467 0.4613 21 1 -6.7681 -1.8408 -0.1434 22 6 -6.7383 -1.2295 1.9246 23 6 -8.1977 -0.9251 2.0959 24 6 -8.9074 -0.2687 1.2351 25 6 -8.3726 0.2705 -0.0592 26 6 -6.8439 0.3145 -0.0242 27 7 -0.0356 -2.4317 -0.0001 28 1 -0.4850 0.8401 0.0004 29 1 3.0885 -3.6561 -0.0017 30 1 1.8219 -5.7892 -0.0026 31 1 -0.6588 -5.7074 -0.0130 32 1 -2.6329 -4.3229 -0.0842 33 1 -4.3578 -0.2668 0.3568 34 1 -6.5459 -2.2588 2.2275 35 1 -6.1545 -0.5539 2.5497 36 1 -8.6861 -1.2751 2.9933 37 1 -9.9495 -0.0987 1.4623 38 1 -8.6937 -0.3726 -0.8787 39 1 -8.7582 1.2776 -0.2180 40 1 -6.5186 1.0953 0.6632 41 1 -6.4575 0.5171 -1.0231 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889941171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:41 Heat of formation + Delta-G solvation = -0.501363 kcal Electronic energy + Delta-G solvation = -25697.699491 eV Core-core repulsion = 21964.529165 eV Total energy + Delta-G solvation = -3733.170326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.38066 -39.08071 -38.05618 -37.12055 -34.70190 -33.90670 -33.02265 -31.06451 -30.38874 -29.76641 -29.16501 -25.80911 -24.73341 -23.44666 -22.26926 -21.50380 -20.91884 -19.63542 -18.50564 -17.87901 -17.19717 -16.78391 -16.16671 -15.77407 -15.29103 -14.96327 -14.71510 -14.48596 -13.97679 -13.81749 -13.71071 -13.55799 -13.41786 -13.11357 -12.87168 -12.61508 -12.54413 -12.03177 -11.99320 -11.38812 -11.20760 -11.00590 -10.98395 -10.91135 -10.75540 -10.69365 -10.52281 -9.98382 -9.79982 -9.25812 -9.09769 -9.08732 -8.97869 -8.03792 -7.33540 -7.06168 -6.22445 -4.45690 1.91655 2.07424 2.77091 2.82271 3.08411 3.13310 3.15862 3.23344 3.96451 4.01224 4.05247 4.47699 4.52117 4.73120 4.86322 4.96614 5.04259 5.09809 5.21377 5.32281 5.39910 5.59260 5.67401 5.83141 5.91174 5.96530 6.01645 6.06364 6.33351 6.42415 6.46614 6.57679 6.71444 6.75108 6.79194 7.15200 7.29345 7.49975 7.52744 7.75972 7.90341 8.04799 8.17810 8.36686 8.62735 8.93256 9.01387 10.14260 10.40946 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.003656 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.347973 B = 7656.561198 C = 9259.201149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.663 5.663 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.424 4.424 8 H 0.083 0.917 9 C 0.271 3.729 10 C -0.300 4.300 11 C -0.036 4.036 12 C -0.349 4.349 13 C 0.368 3.632 14 N -0.639 5.639 15 C 0.466 3.534 16 O -0.387 6.387 17 C 0.510 3.490 18 O -0.534 6.534 19 N -0.702 5.702 20 C 0.146 3.854 21 H 0.092 0.908 22 C -0.106 4.106 23 C -0.144 4.144 24 C -0.164 4.164 25 C -0.086 4.086 26 C -0.129 4.129 27 N -0.475 5.475 28 H 0.272 0.728 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.411 0.589 33 H 0.414 0.586 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.853 2.130 1.189 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.282 5.282 2 C -0.169 4.169 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.454 4.454 8 H 0.102 0.898 9 C 0.146 3.854 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.375 4.375 13 C 0.130 3.870 14 N -0.287 5.287 15 C 0.242 3.758 16 O -0.250 6.250 17 C 0.292 3.708 18 O -0.410 6.410 19 N -0.356 5.356 20 C 0.041 3.959 21 H 0.110 0.890 22 C -0.144 4.144 23 C -0.163 4.163 24 C -0.182 4.182 25 C -0.123 4.123 26 C -0.167 4.167 27 N -0.194 5.194 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.247 0.753 33 H 0.250 0.750 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.492 3.190 1.211 15.864 hybrid contribution 0.647 -0.271 0.091 0.707 sum -14.845 2.919 1.302 15.186 Atomic orbital electron populations 1.70307 1.05936 1.27353 1.24572 1.26162 0.95125 1.00660 0.94962 0.86482 0.80578 0.81646 0.79044 1.19628 1.20295 1.18735 1.19590 0.94132 0.89308 1.42410 0.89847 1.18374 0.86991 0.92062 0.87995 1.21655 0.98670 0.93467 1.18541 1.20587 0.93078 0.96674 0.95704 1.20515 0.94832 0.94954 1.27163 1.18547 0.82662 0.91226 0.94536 1.42997 1.05273 1.09242 1.71227 1.20138 0.87236 0.86068 0.82326 1.91208 1.64626 1.30693 1.38445 1.20838 0.89667 0.83916 0.76416 1.90693 1.68176 1.33139 1.49013 1.45822 1.07381 1.09334 1.73014 1.21043 0.79483 0.98766 0.96604 0.88985 1.20887 0.93857 1.02960 0.96685 1.21999 0.95568 0.99212 0.99508 1.22040 0.99697 1.00063 0.96362 1.20386 0.94373 1.01429 0.96151 1.21900 0.95928 0.96474 1.02423 1.68650 1.07269 1.23153 1.20332 0.91680 0.88376 0.88364 0.88726 0.75326 0.74952 0.90203 0.90252 0.87714 0.87818 0.90595 0.90548 0.90855 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.53 8.99 55.55 0.50 -17.03 16 2 C 0.06 1.52 5.50 -17.34 -0.10 1.42 16 3 Si 0.90 18.63 29.56 -169.99 -5.02 13.60 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.42 -11.36 9.14 -37.73 -0.34 -11.71 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.27 7.47 6.55 -85.00 -0.56 6.91 16 10 C -0.30 -7.43 9.83 -38.65 -0.38 -7.81 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.21 16 12 C -0.35 -7.87 9.95 -38.88 -0.39 -8.26 16 13 C 0.37 9.01 7.42 -155.08 -1.15 7.86 16 14 N -0.64 -13.30 5.37 -11.84 -0.06 -13.36 16 15 C 0.47 9.57 7.84 -11.62 -0.09 9.48 16 16 O -0.39 -9.14 12.24 5.49 0.07 -9.07 16 17 C 0.51 8.69 7.86 -11.63 -0.09 8.60 16 18 O -0.53 -9.64 16.15 5.49 0.09 -9.55 16 19 N -0.70 -9.66 5.08 -54.05 -0.27 -9.93 16 20 C 0.15 1.66 2.50 -67.71 -0.17 1.49 16 21 H 0.09 1.17 7.57 -51.93 -0.39 0.77 16 22 C -0.11 -1.16 5.71 -28.18 -0.16 -1.32 16 23 C -0.14 -1.34 9.80 -35.90 -0.35 -1.69 16 24 C -0.16 -1.36 9.81 -35.90 -0.35 -1.71 16 25 C -0.09 -0.66 6.11 -28.20 -0.17 -0.84 16 26 C -0.13 -1.16 5.50 -26.54 -0.15 -1.30 16 27 N -0.47 -13.09 5.74 -10.28 -0.06 -13.15 16 28 H 0.27 6.63 8.29 -40.82 -0.34 6.29 16 29 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 31 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.41 7.35 8.18 -40.82 -0.33 7.01 16 33 H 0.41 5.49 8.08 -40.82 -0.33 5.16 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.10 0.72 8.06 -52.48 -0.42 0.29 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -31.12 347.23 -9.64 -40.75 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.25 Total: 12.58 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -4.85 Total: -0.08 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.10 Total: -53.47 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.16 Total: -18.62 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.12 -9.64 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889941171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.253 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds