Wall clock time and date at job start Tue Mar 31 2020 10:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 119.99762 * 2 1 4 4 H 1.48498 * 109.47117 * 270.00111 * 3 2 1 5 5 H 1.48498 * 109.47572 * 30.00493 * 3 2 1 6 6 H 1.48504 * 109.46785 * 150.00539 * 3 2 1 7 7 C 1.40030 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 C 1.41339 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.40630 * 119.78290 * 179.97438 * 9 7 2 11 11 C 1.38310 * 119.13042 * 180.02562 * 10 9 7 12 12 C 1.38692 * 118.67310 * 0.28103 * 11 10 9 13 13 C 1.39667 * 119.49068 * 359.44699 * 12 11 10 14 14 N 1.39120 * 119.57436 * 180.25474 * 13 12 11 15 15 C 1.34775 * 119.99617 * 174.61182 * 14 13 12 16 16 O 1.21352 * 120.00331 * 5.14644 * 15 14 13 17 17 C 1.49369 * 119.99972 * 185.14856 * 15 14 13 18 18 O 1.21362 * 119.99698 * 359.97438 * 17 15 14 19 19 N 1.34770 * 120.00341 * 179.97438 * 17 15 14 20 20 C 1.46504 * 120.00318 * 179.97438 * 19 17 15 21 21 H 1.09002 * 109.63588 * 325.00125 * 20 19 17 22 22 C 1.53022 * 109.64239 * 85.41941 * 20 19 17 23 23 C 1.50062 * 110.14981 * 169.12178 * 22 20 19 24 24 C 1.29442 * 124.07286 * 342.87112 * 23 22 20 25 25 C 1.50067 * 124.07684 * 0.48857 * 24 23 22 26 26 C 1.52972 * 110.28865 * 342.97988 * 25 24 23 27 27 N 1.31964 * 120.84840 * 0.56519 * 13 12 11 28 28 H 0.97002 * 119.99993 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.43667 * 0.04778 * 10 9 7 30 30 H 1.08004 * 120.65715 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.25382 * 179.70048 * 12 11 10 32 32 H 0.96992 * 120.00307 * 354.61636 * 14 13 12 33 33 H 0.97002 * 119.99841 * 0.02562 * 19 17 15 34 34 H 1.09001 * 109.35605 * 289.33190 * 22 20 19 35 35 H 1.08998 * 109.35653 * 49.05166 * 22 20 19 36 36 H 1.08002 * 117.96365 * 162.89004 * 23 22 20 37 37 H 1.08006 * 117.96608 * 180.46700 * 24 23 22 38 38 H 1.09003 * 109.35990 * 103.05726 * 25 24 23 39 39 H 1.09003 * 109.35809 * 222.77686 * 25 24 23 40 40 H 1.08996 * 109.47118 * 289.53802 * 26 25 24 41 41 H 1.08997 * 109.79352 * 168.91788 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0085 -3.6520 -0.0016 11 6 1.3034 -4.8418 -0.0022 12 6 -0.0827 -4.7939 -0.0076 13 6 -0.7279 -3.5552 -0.0006 14 7 -2.1182 -3.5051 -0.0006 15 6 -2.7497 -2.3202 0.1157 16 8 -2.1091 -1.2896 0.1264 17 6 -4.2383 -2.2754 0.2315 18 8 -4.8790 -3.3061 0.2203 19 7 -4.8698 -1.0906 0.3483 20 6 -6.3299 -1.0467 0.4613 21 1 -6.7681 -1.8408 -0.1434 22 6 -6.7383 -1.2295 1.9246 23 6 -8.1977 -0.9251 2.0959 24 6 -8.9074 -0.2687 1.2351 25 6 -8.3726 0.2705 -0.0592 26 6 -6.8439 0.3145 -0.0242 27 7 -0.0356 -2.4317 -0.0001 28 1 -0.4850 0.8401 0.0004 29 1 3.0885 -3.6561 -0.0017 30 1 1.8219 -5.7892 -0.0026 31 1 -0.6588 -5.7074 -0.0130 32 1 -2.6329 -4.3229 -0.0842 33 1 -4.3578 -0.2668 0.3568 34 1 -6.5459 -2.2588 2.2275 35 1 -6.1545 -0.5539 2.5497 36 1 -8.6861 -1.2751 2.9933 37 1 -9.9495 -0.0987 1.4623 38 1 -8.6937 -0.3726 -0.8787 39 1 -8.7582 1.2776 -0.2180 40 1 -6.5186 1.0953 0.6632 41 1 -6.4575 0.5171 -1.0231 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889941171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:40 Heat of formation + Delta-G solvation = -19.556831 kcal Electronic energy + Delta-G solvation = -25698.525798 eV Core-core repulsion = 21964.529165 eV Total energy + Delta-G solvation = -3733.996633 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80632 -40.53168 -39.38108 -38.66063 -36.26126 -35.34465 -34.74843 -32.27104 -31.78713 -31.12284 -30.63171 -27.65610 -26.20721 -24.33283 -23.62690 -23.13155 -22.37250 -21.12151 -20.05622 -19.10532 -18.52348 -18.24316 -17.51315 -17.03344 -16.74544 -16.44510 -16.28962 -16.08523 -15.59213 -15.18027 -15.06783 -14.68532 -14.54989 -14.41790 -14.20583 -13.83864 -13.76029 -13.40392 -13.25403 -12.88165 -12.74119 -12.65290 -12.56842 -12.32039 -12.01294 -11.77162 -11.75422 -11.59886 -11.53006 -10.91712 -10.59458 -10.28208 -9.93728 -9.88589 -9.20062 -8.92257 -8.08519 -6.42644 0.37042 1.02929 1.27188 1.38659 1.39726 1.43328 1.54172 1.56915 2.28146 2.37631 2.65892 2.98348 3.47780 3.69130 3.75994 3.96960 4.01477 4.21583 4.32770 4.37621 4.41027 4.59196 4.64172 4.67440 4.81731 4.83050 4.93644 4.94081 4.98848 5.03764 5.18567 5.19900 5.26770 5.33680 5.63113 5.70984 5.73320 5.89664 5.98993 6.03548 6.16550 6.29715 6.54857 6.72035 6.85252 7.03918 7.29019 8.25043 8.55844 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.003656 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.347973 B = 7656.561198 C = 9259.201149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.014 3.986 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.461 4.461 8 H 0.087 0.913 9 C 0.236 3.764 10 C -0.321 4.321 11 C -0.033 4.033 12 C -0.343 4.343 13 C 0.347 3.653 14 N -0.633 5.633 15 C 0.460 3.540 16 O -0.420 6.420 17 C 0.520 3.480 18 O -0.545 6.545 19 N -0.686 5.686 20 C 0.143 3.857 21 H 0.082 0.918 22 C -0.102 4.102 23 C -0.163 4.163 24 C -0.154 4.154 25 C -0.087 4.087 26 C -0.125 4.125 27 N -0.506 5.506 28 H 0.274 0.726 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.424 0.576 33 H 0.417 0.583 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.125 2.512 1.097 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.211 4.211 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.105 0.895 9 C 0.111 3.889 10 C -0.344 4.344 11 C -0.057 4.057 12 C -0.369 4.369 13 C 0.109 3.891 14 N -0.283 5.283 15 C 0.238 3.762 16 O -0.284 6.284 17 C 0.301 3.699 18 O -0.423 6.423 19 N -0.339 5.339 20 C 0.040 3.960 21 H 0.100 0.900 22 C -0.140 4.140 23 C -0.181 4.181 24 C -0.172 4.172 25 C -0.124 4.124 26 C -0.163 4.163 27 N -0.226 5.226 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.147 0.853 32 H 0.262 0.738 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.807 3.551 1.121 17.214 hybrid contribution 0.960 -0.515 0.108 1.095 sum -15.847 3.036 1.229 16.182 Atomic orbital electron populations 1.70456 1.07386 1.28317 1.25216 1.26990 0.96036 1.03911 0.94180 0.85295 0.79080 0.76733 0.79105 1.19139 1.19545 1.18261 1.19921 0.94560 0.90341 1.44343 0.89461 1.18875 0.87685 0.93539 0.88838 1.21854 0.99410 0.93673 1.19496 1.21046 0.93243 0.97604 0.93849 1.20959 0.95366 0.95550 1.24984 1.19001 0.84034 0.91546 0.94515 1.42994 1.04253 1.10183 1.70884 1.20766 0.88807 0.85493 0.81154 1.91203 1.65859 1.31662 1.39717 1.20136 0.87857 0.84814 0.77134 1.90690 1.67748 1.33636 1.50238 1.45859 1.08577 1.08280 1.71144 1.21262 0.77485 1.00195 0.97107 0.90010 1.20798 0.95444 1.01794 0.95975 1.21986 0.94550 1.00819 1.00768 1.22291 1.00500 0.98496 0.95907 1.20464 0.93054 1.02792 0.96090 1.21906 0.97044 0.94702 1.02607 1.68605 1.07622 1.24919 1.21444 0.91501 0.87337 0.84298 0.85309 0.73795 0.74576 0.92122 0.90487 0.86747 0.85869 0.89979 0.88479 0.90309 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -37.90 8.99 21.84 0.20 -37.70 16 2 C 0.01 0.75 5.50 85.29 0.47 1.22 16 3 Si 0.98 38.95 29.56 68.60 2.03 40.98 16 4 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.46 -25.51 9.14 23.47 0.21 -25.29 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.24 13.39 6.55 40.21 0.26 13.66 16 10 C -0.32 -16.00 9.83 22.87 0.22 -15.77 16 11 C -0.03 -1.45 10.15 22.40 0.23 -1.22 16 12 C -0.34 -15.01 9.95 22.72 0.23 -14.78 16 13 C 0.35 17.10 7.42 133.28 0.99 18.09 16 14 N -0.63 -26.56 5.37 -309.72 -1.66 -28.22 16 15 C 0.46 19.31 7.84 87.24 0.68 19.99 16 16 O -0.42 -20.51 12.24 -3.25 -0.04 -20.55 16 17 C 0.52 17.85 7.86 87.24 0.69 18.53 16 18 O -0.54 -19.63 16.15 -3.28 -0.05 -19.68 16 19 N -0.69 -18.84 5.08 -443.28 -2.25 -21.10 16 20 C 0.14 3.16 2.50 45.13 0.11 3.28 16 21 H 0.08 2.02 7.57 -2.39 -0.02 2.00 16 22 C -0.10 -2.18 5.71 29.66 0.17 -2.01 16 23 C -0.16 -2.78 9.80 27.04 0.27 -2.51 16 24 C -0.15 -2.17 9.81 27.04 0.27 -1.90 16 25 C -0.09 -1.10 6.11 29.64 0.18 -0.92 16 26 C -0.12 -2.01 5.50 30.72 0.17 -1.85 16 27 N -0.51 -28.68 5.74 -186.42 -1.07 -29.75 16 28 H 0.27 13.78 8.29 -92.71 -0.77 13.01 16 29 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 30 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 31 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.42 14.98 8.18 -92.71 -0.76 14.22 16 33 H 0.42 11.13 8.08 -92.71 -0.75 10.38 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.11 1.71 8.06 -2.91 -0.02 1.68 16 37 H 0.12 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.21 8.13 -2.39 -0.02 1.19 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -69.04 347.23 1.86 -67.18 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -0.43 Total: 40.34 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.15 Total: 8.50 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -4.79 Total: -116.77 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.09 Total: -40.23 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -69.04 1.86 -67.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889941171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.621 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds