Wall clock time and date at job start Tue Mar 31 2020 10:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86792 * 119.99862 * 2 1 4 4 H 1.48503 * 109.47327 * 264.71948 * 3 2 1 5 5 H 1.48499 * 109.47581 * 24.72119 * 3 2 1 6 6 H 1.48506 * 109.46976 * 144.72458 * 3 2 1 7 7 C 1.40033 * 119.99634 * 179.72167 * 2 1 3 8 8 H 1.08003 * 119.99809 * 186.18276 * 7 2 1 9 9 C 1.41336 * 120.00164 * 6.18237 * 7 2 1 10 10 C 1.40633 * 119.78298 * 186.08523 * 9 7 2 11 11 C 1.38306 * 119.13148 * 179.97438 * 10 9 7 12 12 C 1.38691 * 118.67400 * 0.02562 * 11 10 9 13 13 C 1.39669 * 119.49229 * 359.97438 * 12 11 10 14 14 N 1.39114 * 119.57828 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00122 * 175.02684 * 14 13 12 16 16 O 1.21349 * 119.99795 * 5.53595 * 15 14 13 17 17 C 1.49369 * 119.99873 * 185.52966 * 15 14 13 18 18 O 1.21358 * 120.00106 * 0.02562 * 17 15 14 19 19 N 1.34780 * 119.99873 * 180.02562 * 17 15 14 20 20 C 1.46500 * 120.00003 * 180.02562 * 19 17 15 21 21 H 1.08998 * 115.52533 * 350.58394 * 20 19 17 22 22 C 1.52997 * 117.46003 * 205.08571 * 20 19 17 23 23 H 1.08994 * 119.29544 * 141.09587 * 22 20 19 24 24 C 1.54266 * 118.20041 * 346.95566 * 22 20 19 25 25 C 1.54891 * 104.19419 * 272.21410 * 24 22 20 26 26 C 1.54881 * 102.75253 * 37.93954 * 25 24 22 27 27 C 1.53001 * 117.45804 * 136.07812 * 20 19 17 28 28 H 1.08994 * 119.29828 * 218.90348 * 27 20 19 29 29 N 1.31957 * 120.84302 * 359.74299 * 13 12 11 30 30 H 0.96992 * 119.99788 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.43496 * 359.96095 * 10 9 7 32 32 H 1.07995 * 120.66478 * 179.97438 * 11 10 9 33 33 H 1.07997 * 120.25892 * 180.02562 * 12 11 10 34 34 H 0.97003 * 119.99851 * 355.02682 * 14 13 12 35 35 H 0.96999 * 119.99629 * 0.02562 * 19 17 15 36 36 H 1.09009 * 110.48650 * 30.88567 * 24 22 20 37 37 H 1.08996 * 110.49166 * 153.40020 * 24 22 20 38 38 H 1.08993 * 110.75645 * 156.25976 * 25 24 22 39 39 H 1.09007 * 110.75244 * 279.44080 * 25 24 22 40 40 H 1.09001 * 110.48885 * 80.73990 * 26 25 24 41 41 H 1.08998 * 110.49093 * 203.25187 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.6005 1.9820 -1.3941 5 1 1.3876 2.6823 0.5855 6 1 3.4788 1.4749 0.8086 7 6 2.0076 -1.2127 0.0059 8 1 3.0829 -1.2150 0.1066 9 6 1.3070 -2.4338 -0.1200 10 6 1.9967 -3.6520 0.0148 11 6 1.2977 -4.8388 -0.1104 12 6 -0.0643 -4.7852 -0.3661 13 6 -0.6925 -3.5438 -0.4894 14 7 -2.0587 -3.4880 -0.7453 15 6 -2.6923 -2.2986 -0.7665 16 8 -2.0563 -1.2704 -0.6626 17 6 -4.1774 -2.2461 -0.9180 18 8 -4.8135 -3.2744 -1.0215 19 7 -4.8109 -1.0567 -0.9397 20 6 -6.2675 -1.0052 -1.0877 21 1 -6.7484 -1.9519 -1.3337 22 6 -6.8717 0.2685 -1.6823 23 1 -7.7119 0.1887 -2.3719 24 6 -5.9716 1.5158 -1.8008 25 6 -6.1319 2.2309 -0.4363 26 6 -6.1991 1.0496 0.5631 27 6 -7.0347 -0.0380 -0.1839 28 1 -7.9952 -0.3437 0.2309 29 7 -0.0075 -2.4233 -0.3608 30 1 -0.4849 0.8400 0.0004 31 1 3.0582 -3.6606 0.2132 32 1 1.8027 -5.7884 -0.0119 33 1 -0.6352 -5.6963 -0.4682 34 1 -2.5554 -4.3051 -0.9085 35 1 -4.3024 -0.2348 -0.8573 36 1 -4.9334 1.2234 -1.9586 37 1 -6.3138 2.1575 -2.6127 38 1 -5.2695 2.8642 -0.2284 39 1 -7.0525 2.8142 -0.4117 40 1 -5.1977 0.6819 0.7871 41 1 -6.7068 1.3527 1.4787 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890233666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:50 Heat of formation + Delta-G solvation = -1.399962 kcal Electronic energy + Delta-G solvation = -26019.127872 eV Core-core repulsion = 22285.918580 eV Total energy + Delta-G solvation = -3733.209292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91176 -40.85219 -39.82823 -38.83449 -36.23337 -35.13715 -34.56012 -32.29078 -32.04306 -31.07992 -29.10621 -27.70728 -26.40880 -23.85217 -23.26140 -22.86480 -21.40179 -20.65239 -20.63438 -20.06867 -18.96430 -18.14623 -17.61643 -16.82201 -16.74066 -16.65315 -16.39047 -16.28998 -15.64642 -15.31339 -15.13128 -14.69973 -14.39359 -14.22364 -14.08250 -13.86194 -13.77406 -12.91284 -12.75246 -12.72135 -12.58923 -12.51410 -12.36256 -12.27611 -12.13867 -11.81447 -11.78671 -11.64845 -11.58809 -10.92435 -10.81847 -10.61290 -9.95877 -9.89114 -9.21656 -8.93522 -8.14173 -6.42378 0.31061 1.00984 1.25410 1.32522 1.41943 1.53099 1.55314 2.26968 2.28120 2.59845 2.72518 2.96541 3.40452 3.46961 3.72919 3.74326 4.00369 4.18860 4.24144 4.32143 4.46695 4.49301 4.58715 4.66003 4.74050 4.80614 4.81206 4.93625 4.97737 4.98319 5.15222 5.16362 5.25522 5.26272 5.30588 5.42732 5.62388 5.69288 5.88850 5.96827 6.13429 6.27661 6.51514 6.69136 6.81681 7.02406 7.25039 8.23509 8.53711 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.004493 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.916284 B = 6229.894414 C = 8216.578168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.698 5.698 2 C 0.017 3.983 3 Si 0.976 3.024 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.088 0.912 9 C 0.239 3.761 10 C -0.321 4.321 11 C -0.033 4.033 12 C -0.341 4.341 13 C 0.346 3.654 14 N -0.632 5.632 15 C 0.462 3.538 16 O -0.423 6.423 17 C 0.522 3.478 18 O -0.542 6.542 19 N -0.663 5.663 20 C 0.073 3.927 21 H 0.141 0.859 22 C -0.152 4.152 23 H 0.140 0.860 24 C -0.107 4.107 25 C -0.119 4.119 26 C -0.106 4.106 27 C -0.160 4.160 28 H 0.140 0.860 29 N -0.508 5.508 30 H 0.274 0.726 31 H 0.109 0.891 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.425 0.575 35 H 0.414 0.586 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.613 3.894 -1.778 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.208 4.208 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.495 4.495 8 H 0.106 0.894 9 C 0.114 3.886 10 C -0.344 4.344 11 C -0.057 4.057 12 C -0.367 4.367 13 C 0.108 3.892 14 N -0.282 5.282 15 C 0.240 3.760 16 O -0.288 6.288 17 C 0.303 3.697 18 O -0.421 6.421 19 N -0.314 5.314 20 C -0.032 4.032 21 H 0.159 0.841 22 C -0.171 4.171 23 H 0.158 0.842 24 C -0.144 4.144 25 C -0.156 4.156 26 C -0.144 4.144 27 C -0.179 4.179 28 H 0.157 0.843 29 N -0.227 5.227 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.263 0.737 35 H 0.253 0.747 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.262 4.934 -1.822 16.143 hybrid contribution 0.965 -0.453 0.061 1.068 sum -14.296 4.482 -1.761 15.086 Atomic orbital electron populations 1.70375 1.07573 1.28464 1.25320 1.26956 0.95943 1.03931 0.94018 0.85322 0.79090 0.76656 0.79223 1.19309 1.19490 1.18069 1.19902 0.95019 0.90500 1.44039 0.89424 1.18836 0.87649 0.93492 0.88613 1.21865 1.00225 0.93684 1.18666 1.21048 0.93216 0.97643 0.93769 1.20959 0.96401 0.95483 1.23836 1.18979 0.84356 0.91570 0.94270 1.42971 1.06528 1.09855 1.68804 1.20685 0.88592 0.85515 0.81216 1.91178 1.66029 1.32139 1.39411 1.20107 0.87882 0.84570 0.77167 1.90678 1.67862 1.33799 1.49715 1.45182 1.07967 1.08074 1.70226 1.22153 0.78568 0.97126 1.05317 0.84102 1.23866 1.02025 0.93725 0.97492 0.84199 1.22019 0.98479 0.95028 0.98894 1.22658 1.02776 0.97028 0.93145 1.22321 0.98934 0.94143 0.98988 1.24346 1.01249 0.99266 0.93081 0.84255 1.68529 1.08001 1.25248 1.20951 0.91492 0.87307 0.84238 0.85208 0.73688 0.74717 0.93065 0.89162 0.91382 0.89380 0.93310 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -38.28 9.18 21.84 0.20 -38.08 16 2 C 0.02 0.89 5.48 85.29 0.47 1.36 16 3 Si 0.98 39.16 29.56 68.60 2.03 41.18 16 4 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.46 -25.73 9.13 23.47 0.21 -25.51 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 9 C 0.24 13.58 6.53 40.21 0.26 13.85 16 10 C -0.32 -15.99 9.83 22.87 0.22 -15.77 16 11 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 12 C -0.34 -14.89 9.95 22.72 0.23 -14.66 16 13 C 0.35 17.08 7.42 133.29 0.99 18.07 16 14 N -0.63 -26.58 5.37 -309.72 -1.66 -28.24 16 15 C 0.46 19.66 7.84 87.24 0.68 20.35 16 16 O -0.42 -20.93 12.36 -3.24 -0.04 -20.97 16 17 C 0.52 18.32 7.89 87.24 0.69 19.01 16 18 O -0.54 -19.62 16.05 -3.27 -0.05 -19.67 16 19 N -0.66 -19.21 4.76 -443.95 -2.11 -21.32 16 20 C 0.07 1.64 6.36 44.99 0.29 1.92 16 21 H 0.14 3.21 7.40 -2.39 -0.02 3.19 16 22 C -0.15 -2.54 6.89 -10.09 -0.07 -2.61 16 23 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 24 C -0.11 -1.86 6.30 31.67 0.20 -1.66 16 25 C -0.12 -1.93 6.91 31.88 0.22 -1.71 16 26 C -0.11 -1.99 6.34 32.34 0.20 -1.79 16 27 C -0.16 -2.81 7.10 -9.42 -0.07 -2.87 16 28 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 29 N -0.51 -28.77 5.77 -186.43 -1.08 -29.85 16 30 H 0.27 13.91 8.29 -92.71 -0.77 13.14 16 31 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 32 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 33 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.42 14.98 8.18 -92.71 -0.76 14.22 16 35 H 0.41 12.28 5.53 -92.71 -0.51 11.77 16 36 H 0.05 1.11 6.62 -2.38 -0.02 1.09 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.05 1.16 6.90 -2.39 -0.02 1.15 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -68.74 342.28 1.87 -66.88 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: -0.18 Total: 43.28 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 4.76 Total: 6.79 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -4.65 Total: -117.49 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.09 Total: -40.64 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.18 kcal Total: -68.74 1.87 -66.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890233666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.476 kcal (2) G-P(sol) polarization free energy of solvation -68.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds