Wall clock time and date at job start Tue Mar 31 2020 10:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86796 * 120.00302 * 2 1 4 4 H 1.48504 * 109.47180 * 269.99855 * 3 2 1 5 5 H 1.48503 * 109.47144 * 29.99647 * 3 2 1 6 6 H 1.48493 * 109.47324 * 149.99539 * 3 2 1 7 7 C 1.40034 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99665 * 180.02562 * 7 2 1 9 9 C 1.41336 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.40633 * 119.78344 * 179.97438 * 9 7 2 11 11 C 1.38306 * 119.13350 * 179.97438 * 10 9 7 12 12 C 1.38700 * 118.66968 * 0.02562 * 11 10 9 13 13 C 1.39661 * 119.49480 * 359.97438 * 12 11 10 14 14 N 1.39111 * 119.57836 * 179.97438 * 13 12 11 15 15 C 1.34783 * 120.00109 * 185.30899 * 14 13 12 16 16 O 1.21351 * 119.99771 * 354.84588 * 15 14 13 17 17 C 1.49367 * 119.99916 * 174.57516 * 15 14 13 18 18 O 1.21362 * 120.00047 * 359.97438 * 17 15 14 19 19 N 1.34773 * 119.99922 * 179.97438 * 17 15 14 20 20 C 1.46502 * 119.99819 * 179.97438 * 19 17 15 21 21 H 1.08993 * 115.55123 * 9.28013 * 20 19 17 22 22 C 1.53006 * 117.49843 * 223.60652 * 20 19 17 23 23 C 1.53002 * 59.99923 * 252.51449 * 22 20 19 24 24 H 1.08994 * 117.50336 * 107.49079 * 23 22 20 25 25 C 1.53006 * 117.49509 * 252.50943 * 23 22 20 26 26 C 1.53006 * 117.49487 * 197.24404 * 25 23 22 27 27 C 1.53003 * 59.99977 * 252.51334 * 26 25 23 28 28 N 1.31963 * 120.84396 * 0.25070 * 13 12 11 29 29 H 0.96995 * 119.99855 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.43016 * 359.95929 * 10 9 7 31 31 H 1.07996 * 120.66207 * 179.97438 * 11 10 9 32 32 H 1.07994 * 120.24876 * 179.97438 * 12 11 10 33 33 H 0.96997 * 120.00070 * 5.30748 * 14 13 12 34 34 H 0.96994 * 119.99973 * 359.97438 * 19 17 15 35 35 H 1.09005 * 117.49503 * 0.02562 * 22 20 19 36 36 H 1.08996 * 117.49971 * 144.99862 * 22 20 19 37 37 H 1.08996 * 115.54860 * 342.95495 * 25 23 22 38 38 H 1.08994 * 117.49899 * 0.02562 * 26 25 23 39 39 H 1.09000 * 117.49037 * 145.02705 * 26 25 23 40 40 H 1.08997 * 117.49905 * 252.51665 * 27 26 25 41 41 H 1.08996 * 117.49940 * 107.49081 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0075 -1.2128 0.0005 8 1 3.0876 -1.2128 0.0010 9 6 1.3008 -2.4368 0.0005 10 6 2.0085 -3.6520 0.0005 11 6 1.3034 -4.8419 0.0011 12 6 -0.0828 -4.7939 0.0011 13 6 -0.7279 -3.5552 0.0010 14 7 -2.1181 -3.5050 0.0005 15 6 -2.7497 -2.3192 -0.1075 16 8 -2.1090 -1.2886 -0.1101 17 6 -4.2376 -2.2740 -0.2302 18 8 -4.8779 -3.3050 -0.2330 19 7 -4.8692 -1.0883 -0.3377 20 6 -6.3285 -1.0440 -0.4585 21 1 -6.8426 -1.9913 -0.2962 22 6 -6.9230 -0.0855 -1.4924 23 6 -7.0369 0.2324 -0.0001 24 1 -6.4171 1.0390 0.3913 25 6 -8.4131 0.0815 0.6513 26 6 -8.6341 0.7656 2.0019 27 6 -8.5022 -0.7570 1.9280 28 7 -0.0356 -2.4318 -0.0039 29 1 -0.4850 0.8400 -0.0004 30 1 3.0885 -3.6561 -0.0001 31 1 1.8218 -5.7893 0.0007 32 1 -0.6587 -5.7074 0.0011 33 1 -2.6330 -4.3234 0.0778 34 1 -4.3575 -0.2643 -0.3350 35 1 -6.2282 0.5117 -2.0830 36 1 -7.8282 -0.4023 -2.0104 37 1 -9.2572 0.0415 -0.0372 38 1 -7.7993 1.3233 2.4262 39 1 -9.6239 1.1758 2.2022 40 1 -9.4052 -1.3483 2.0796 41 1 -7.5805 -1.2011 2.3037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890249989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:42 Heat of formation + Delta-G solvation = 24.671028 kcal Electronic energy + Delta-G solvation = -25363.377708 eV Core-core repulsion = 21631.298939 eV Total energy + Delta-G solvation = -3732.078769 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76645 -40.47197 -39.47128 -38.78538 -36.78570 -36.05673 -34.95553 -33.60036 -32.27485 -31.08470 -27.71668 -26.53764 -24.74202 -23.78799 -23.33500 -23.11776 -22.24095 -21.45423 -20.78627 -19.90969 -18.83876 -18.25044 -17.62229 -16.79218 -16.71749 -16.52027 -16.39288 -16.28820 -15.63918 -15.40649 -15.22062 -15.01514 -14.65685 -14.14754 -13.90239 -13.77872 -13.46864 -12.89431 -12.75885 -12.74783 -12.59836 -12.56984 -12.35917 -12.32170 -12.28017 -11.88691 -11.76882 -11.61351 -11.20207 -10.92569 -10.84503 -10.61268 -9.94369 -9.80806 -9.21119 -8.93084 -8.09416 -6.43283 0.32751 1.01199 1.25861 1.31744 1.42558 1.53312 1.56160 2.27311 2.29419 2.56446 2.69367 2.97515 3.06096 3.44932 3.65733 3.70920 3.89808 4.00864 4.11743 4.18081 4.32295 4.34515 4.48885 4.66289 4.70106 4.80913 4.81336 4.87761 4.93722 4.98218 5.03172 5.16943 5.25575 5.26381 5.27255 5.33039 5.62551 5.70211 5.89070 5.97359 6.14170 6.28325 6.52850 6.69986 6.82537 7.03170 7.26872 8.24324 8.54889 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.003549 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.829301 B = 7888.749237 C = 9440.864750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.014 3.986 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.461 4.461 8 H 0.088 0.912 9 C 0.236 3.764 10 C -0.321 4.321 11 C -0.033 4.033 12 C -0.342 4.342 13 C 0.346 3.654 14 N -0.632 5.632 15 C 0.461 3.539 16 O -0.420 6.420 17 C 0.523 3.477 18 O -0.543 6.543 19 N -0.664 5.664 20 C 0.060 3.940 21 H 0.132 0.868 22 C -0.164 4.164 23 C -0.117 4.117 24 H 0.110 0.890 25 C -0.125 4.125 26 C -0.171 4.171 27 C -0.185 4.185 28 N -0.506 5.506 29 H 0.274 0.726 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.425 0.575 34 H 0.417 0.583 35 H 0.104 0.896 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.272 2.433 0.111 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.211 4.211 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.106 0.894 9 C 0.111 3.889 10 C -0.344 4.344 11 C -0.057 4.057 12 C -0.368 4.368 13 C 0.109 3.891 14 N -0.282 5.282 15 C 0.239 3.761 16 O -0.284 6.284 17 C 0.304 3.696 18 O -0.421 6.421 19 N -0.314 5.314 20 C -0.044 4.044 21 H 0.150 0.850 22 C -0.202 4.202 23 C -0.137 4.137 24 H 0.128 0.872 25 C -0.143 4.143 26 C -0.208 4.208 27 C -0.222 4.222 28 N -0.226 5.226 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.263 0.737 34 H 0.254 0.746 35 H 0.122 0.878 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.929 3.457 0.089 17.278 hybrid contribution 1.026 -0.339 0.099 1.085 sum -15.902 3.117 0.189 16.206 Atomic orbital electron populations 1.70459 1.07399 1.28275 1.25318 1.26993 0.96027 1.03924 0.94156 0.85296 0.79102 0.76719 0.79110 1.19138 1.19605 1.18194 1.19924 0.94569 0.90330 1.44342 0.89434 1.18872 0.87669 0.93550 0.88841 1.21857 0.99425 0.93664 1.19432 1.21050 0.93238 0.97610 0.93830 1.20961 0.95367 0.95539 1.24898 1.18993 0.83992 0.91570 0.94573 1.42973 1.04274 1.10026 1.70926 1.20691 0.88626 0.85559 0.81208 1.91207 1.65772 1.31722 1.39731 1.20097 0.87888 0.84561 0.77072 1.90684 1.67746 1.33571 1.50140 1.45114 1.07368 1.08302 1.70652 1.21948 0.78549 0.97303 1.06632 0.85034 1.23681 1.03573 1.01253 0.91670 1.22337 0.96544 0.97562 0.97232 0.87167 1.21807 0.95956 1.05830 0.90741 1.23061 1.03667 0.94832 0.99274 1.22995 1.03221 0.94414 1.01569 1.68595 1.07649 1.24945 1.21446 0.91555 0.87316 0.84257 0.85243 0.73730 0.74577 0.87786 0.85825 0.85778 0.89168 0.87198 0.87613 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -38.01 8.99 21.84 0.20 -37.81 16 2 C 0.01 0.75 5.50 85.29 0.47 1.22 16 3 Si 0.98 39.02 29.56 68.60 2.03 41.05 16 4 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.46 -25.50 9.14 23.47 0.21 -25.29 16 8 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 9 C 0.24 13.38 6.55 40.22 0.26 13.65 16 10 C -0.32 -15.93 9.83 22.87 0.22 -15.71 16 11 C -0.03 -1.44 10.15 22.40 0.23 -1.21 16 12 C -0.34 -14.90 9.95 22.72 0.23 -14.68 16 13 C 0.35 17.05 7.42 133.28 0.99 18.04 16 14 N -0.63 -26.44 5.37 -309.72 -1.66 -28.11 16 15 C 0.46 19.40 7.84 87.24 0.68 20.08 16 16 O -0.42 -20.55 12.24 -3.25 -0.04 -20.59 16 17 C 0.52 18.04 7.89 87.24 0.69 18.73 16 18 O -0.54 -19.58 16.05 -3.28 -0.05 -19.63 16 19 N -0.66 -18.49 5.56 -443.94 -2.47 -20.95 16 20 C 0.06 1.33 6.08 44.99 0.27 1.60 16 21 H 0.13 3.16 7.40 -2.39 -0.02 3.14 16 22 C -0.16 -2.65 10.18 30.60 0.31 -2.34 16 23 C -0.12 -2.00 5.79 -10.79 -0.06 -2.06 16 24 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 25 C -0.13 -1.82 5.87 -10.79 -0.06 -1.89 16 26 C -0.17 -2.39 10.25 30.60 0.31 -2.08 16 27 C -0.18 -2.95 10.18 30.60 0.31 -2.64 16 28 N -0.51 -28.68 5.73 -186.44 -1.07 -29.75 16 29 H 0.27 13.81 8.29 -92.71 -0.77 13.04 16 30 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 31 H 0.14 4.80 8.06 -2.91 -0.02 4.78 16 32 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 33 H 0.42 14.91 8.18 -92.71 -0.76 14.15 16 34 H 0.42 11.37 8.30 -92.71 -0.77 10.60 16 35 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -68.78 356.75 1.56 -67.22 By element: Atomic # 1 Polarization: 43.59 SS G_CDS: -0.44 Total: 43.15 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 5.07 Total: 5.43 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -5.00 Total: -116.63 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.09 Total: -40.22 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -68.78 1.56 -67.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890249989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.889 kcal (2) G-P(sol) polarization free energy of solvation -68.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds