Wall clock time and date at job start Tue Mar 31 2020 10:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48504 * 109.46904 * 239.99477 * 3 2 1 5 5 H 1.48496 * 109.47438 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47669 * 119.99590 * 3 2 1 7 7 C 1.40034 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99593 * 180.02562 * 7 2 1 9 9 C 1.41332 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.40631 * 119.78419 * 179.97438 * 9 7 2 11 11 C 1.38309 * 119.13194 * 180.02562 * 10 9 7 12 12 C 1.38694 * 118.67499 * 0.02562 * 11 10 9 13 13 C 1.39666 * 119.49309 * 0.02562 * 12 11 10 14 14 N 1.39117 * 119.57944 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99887 * 174.54026 * 14 13 12 16 16 O 1.21358 * 120.00098 * 354.64564 * 15 14 13 17 17 C 1.49369 * 119.99963 * 174.36462 * 15 14 13 18 18 O 1.21368 * 119.99416 * 0.28076 * 17 15 14 19 19 N 1.34770 * 120.00083 * 180.27529 * 17 15 14 20 20 C 1.47066 * 136.05868 * 4.64959 * 19 17 15 21 21 C 1.53242 * 88.08099 * 207.19778 * 20 19 17 22 22 C 1.47071 * 136.05641 * 185.01635 * 19 17 15 23 23 H 1.09002 * 113.46730 * 267.63212 * 22 19 17 24 24 C 1.53002 * 113.46596 * 38.06300 * 22 19 17 25 25 C 1.53003 * 117.50268 * 253.40918 * 24 22 19 26 26 C 1.53004 * 117.49623 * 184.75002 * 24 22 19 27 27 N 1.31959 * 120.84066 * 0.26955 * 13 12 11 28 28 H 0.96999 * 119.99916 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.43617 * 0.02562 * 10 9 7 30 30 H 1.08004 * 120.66322 * 180.02562 * 11 10 9 31 31 H 1.07994 * 120.25287 * 180.02562 * 12 11 10 32 32 H 0.97002 * 119.99906 * 354.54509 * 14 13 12 33 33 H 1.08994 * 113.46939 * 321.93419 * 20 19 17 34 34 H 1.09006 * 113.46558 * 92.37153 * 20 19 17 35 35 H 1.08997 * 114.32420 * 220.46272 * 21 20 19 36 36 H 1.09000 * 114.18962 * 87.73124 * 21 20 19 37 37 H 1.08998 * 115.54579 * 39.08654 * 24 22 19 38 38 H 1.09005 * 117.49538 * 0.02562 * 25 24 22 39 39 H 1.08998 * 117.49699 * 145.02209 * 25 24 22 40 40 H 1.09004 * 117.49788 * 214.98413 * 26 24 22 41 41 H 1.08993 * 117.49999 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0085 -3.6520 0.0005 11 6 1.3034 -4.8418 0.0000 12 6 -0.0827 -4.7939 -0.0011 13 6 -0.7280 -3.5552 -0.0021 14 7 -2.1182 -3.5051 -0.0037 15 6 -2.7499 -2.3196 0.1063 16 8 -2.1104 -1.3074 0.3042 17 6 -4.2365 -2.2508 -0.0216 18 8 -4.8760 -3.2632 -0.2195 19 7 -4.8677 -1.0646 0.0829 20 6 -4.4621 0.3414 0.2295 21 6 -5.7991 0.6001 0.9322 22 6 -6.2652 -0.6073 0.1071 23 1 -6.6510 -0.3382 -0.8763 24 6 -7.2000 -1.5450 0.8737 25 6 -8.1656 -2.4045 0.0551 26 6 -8.6944 -1.2167 0.8630 27 7 -0.0356 -2.4318 -0.0074 28 1 -0.4850 0.8400 -0.0004 29 1 3.0885 -3.6561 0.0010 30 1 1.8217 -5.7893 0.0004 31 1 -0.6587 -5.7074 -0.0011 32 1 -2.6330 -4.3233 -0.0840 33 1 -3.5981 0.4784 0.8796 34 1 -4.3626 0.8658 -0.7209 35 1 -6.2763 1.5406 0.6571 36 1 -5.7794 0.4255 2.0080 37 1 -6.7868 -1.9799 1.7837 38 1 -8.1345 -2.3021 -1.0297 39 1 -8.3878 -3.4047 0.4268 40 1 -9.2644 -1.4360 1.7659 41 1 -9.0114 -0.3324 0.3102 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890303864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:12 Heat of formation + Delta-G solvation = 62.972991 kcal Electronic energy + Delta-G solvation = -26149.086510 eV Core-core repulsion = 22418.668638 eV Total energy + Delta-G solvation = -3730.417871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69309 -39.29254 -37.93100 -37.02062 -36.43516 -34.24217 -33.07390 -30.38229 -29.88364 -29.16677 -26.59772 -25.75037 -24.41020 -22.50801 -22.07597 -21.49917 -21.17351 -20.25397 -18.90817 -18.02884 -17.01860 -16.67676 -16.08164 -15.98580 -15.08617 -14.76958 -14.71261 -14.48008 -14.26927 -13.66347 -13.57867 -13.34459 -13.27108 -12.86753 -12.58709 -12.19845 -12.03664 -11.96109 -11.68679 -11.53730 -11.18299 -11.09836 -11.02019 -10.85379 -10.70397 -10.51780 -10.47525 -10.00808 -9.97092 -9.77587 -9.08930 -8.85040 -8.69666 -8.03202 -7.34247 -7.03270 -6.22419 -4.45463 1.98216 2.52524 2.83853 3.09748 3.11673 3.14661 3.24181 3.61319 3.96842 3.99833 4.01589 4.30204 4.51421 4.78753 4.83640 4.86813 4.90020 4.93757 5.13353 5.27273 5.45140 5.48392 5.57428 5.70814 5.78397 5.94147 5.97406 5.99357 6.05947 6.06999 6.20018 6.44145 6.58881 6.76369 6.79596 7.16452 7.43293 7.52876 7.68238 7.76422 7.85670 8.05111 8.19986 8.38087 8.65329 8.94319 9.03220 10.15159 10.41212 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.004231 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.465514 B = 6615.649163 C = 8366.389550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.664 5.664 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.425 4.425 8 H 0.083 0.917 9 C 0.272 3.728 10 C -0.301 4.301 11 C -0.036 4.036 12 C -0.349 4.349 13 C 0.370 3.630 14 N -0.641 5.641 15 C 0.472 3.528 16 O -0.386 6.386 17 C 0.535 3.465 18 O -0.529 6.529 19 N -0.618 5.618 20 C 0.105 3.895 21 C -0.150 4.150 22 C 0.165 3.835 23 H 0.092 0.908 24 C -0.154 4.154 25 C -0.165 4.165 26 C -0.173 4.173 27 N -0.476 5.476 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.411 0.589 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.117 2.855 1.127 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.283 5.283 2 C -0.168 4.168 3 Si 0.723 3.277 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.101 0.899 9 C 0.147 3.853 10 C -0.324 4.324 11 C -0.060 4.060 12 C -0.375 4.375 13 C 0.132 3.868 14 N -0.290 5.290 15 C 0.248 3.752 16 O -0.248 6.248 17 C 0.320 3.680 18 O -0.406 6.406 19 N -0.355 5.355 20 C -0.018 4.018 21 C -0.188 4.188 22 C 0.062 3.938 23 H 0.110 0.890 24 C -0.173 4.173 25 C -0.202 4.202 26 C -0.211 4.211 27 N -0.195 5.195 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.246 0.754 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.505 3.879 1.124 15.057 hybrid contribution 0.573 -0.717 -0.167 0.933 sum -13.932 3.162 0.957 14.319 Atomic orbital electron populations 1.70293 1.05978 1.27389 1.24645 1.26146 0.95104 1.00628 0.94919 0.86542 0.80209 0.81254 0.79711 1.19179 1.20353 1.19143 1.19550 0.94092 0.89331 1.42576 0.89910 1.18351 0.86953 0.92031 0.87932 1.21655 0.98661 0.93480 1.18571 1.20584 0.93065 0.96672 0.95716 1.20516 0.94831 0.94958 1.27156 1.18525 0.82639 0.91209 0.94388 1.43008 1.05247 1.09074 1.71633 1.20038 0.86982 0.85749 0.82413 1.91142 1.64634 1.31989 1.37039 1.20408 0.88970 0.81912 0.76661 1.90699 1.68098 1.33694 1.48060 1.49439 1.08686 1.06099 1.71238 1.22985 0.98819 0.79094 1.00855 1.23451 0.96894 0.97757 1.00712 1.22301 0.82228 0.91223 0.98036 0.88979 1.22355 0.90917 1.02278 1.01762 1.22871 1.03081 0.95726 0.98500 1.22925 0.95232 1.00093 1.02809 1.68607 1.07287 1.23211 1.20426 0.91689 0.88382 0.88373 0.88751 0.75390 0.88250 0.89554 0.89160 0.88576 0.87588 0.88892 0.88822 0.88699 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.52 9.09 55.55 0.50 -17.02 16 2 C 0.06 1.54 5.50 -17.34 -0.10 1.45 16 3 Si 0.90 18.59 29.56 -169.99 -5.02 13.57 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 7 C -0.42 -11.43 9.14 -37.73 -0.34 -11.77 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.27 7.55 6.55 -85.00 -0.56 7.00 16 10 C -0.30 -7.49 9.83 -38.65 -0.38 -7.87 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.35 -7.98 9.96 -38.88 -0.39 -8.37 16 13 C 0.37 9.20 7.41 -155.08 -1.15 8.05 16 14 N -0.64 -13.78 5.37 -11.84 -0.06 -13.84 16 15 C 0.47 10.12 7.83 -11.62 -0.09 10.03 16 16 O -0.39 -9.27 11.03 5.49 0.06 -9.21 16 17 C 0.54 9.90 8.01 -11.63 -0.09 9.80 16 18 O -0.53 -10.23 16.80 5.48 0.09 -10.13 16 19 N -0.62 -9.37 3.57 -178.15 -0.64 -10.00 16 20 C 0.11 1.34 7.69 -8.64 -0.07 1.28 16 21 C -0.15 -1.41 8.02 -26.35 -0.21 -1.62 16 22 C 0.16 1.87 4.12 -72.39 -0.30 1.57 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 24 C -0.15 -1.72 5.11 -90.62 -0.46 -2.18 16 25 C -0.16 -1.74 10.25 -26.69 -0.27 -2.02 16 26 C -0.17 -1.46 10.25 -26.69 -0.27 -1.74 16 27 N -0.48 -13.23 5.75 -10.28 -0.06 -13.29 16 28 H 0.27 6.60 8.29 -40.82 -0.34 6.26 16 29 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.41 7.64 8.18 -40.82 -0.33 7.30 16 33 H 0.10 1.48 7.21 -51.93 -0.37 1.11 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.90 8.12 -51.93 -0.42 0.48 16 37 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -31.89 351.25 -10.24 -42.13 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.33 Total: 10.12 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -5.08 Total: 2.39 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.25 Total: -54.16 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.15 Total: -19.34 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.89 -10.24 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890303864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.104 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds