Wall clock time and date at job start Tue Mar 31 2020 10:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48504 * 109.46904 * 239.99477 * 3 2 1 5 5 H 1.48496 * 109.47438 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47669 * 119.99590 * 3 2 1 7 7 C 1.40034 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99593 * 180.02562 * 7 2 1 9 9 C 1.41332 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.40631 * 119.78419 * 179.97438 * 9 7 2 11 11 C 1.38309 * 119.13194 * 180.02562 * 10 9 7 12 12 C 1.38694 * 118.67499 * 0.02562 * 11 10 9 13 13 C 1.39666 * 119.49309 * 0.02562 * 12 11 10 14 14 N 1.39117 * 119.57944 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99887 * 174.54026 * 14 13 12 16 16 O 1.21358 * 120.00098 * 354.64564 * 15 14 13 17 17 C 1.49369 * 119.99963 * 174.36462 * 15 14 13 18 18 O 1.21368 * 119.99416 * 0.28076 * 17 15 14 19 19 N 1.34770 * 120.00083 * 180.27529 * 17 15 14 20 20 C 1.47066 * 136.05868 * 4.64959 * 19 17 15 21 21 C 1.53242 * 88.08099 * 207.19778 * 20 19 17 22 22 C 1.47071 * 136.05641 * 185.01635 * 19 17 15 23 23 H 1.09002 * 113.46730 * 267.63212 * 22 19 17 24 24 C 1.53002 * 113.46596 * 38.06300 * 22 19 17 25 25 C 1.53003 * 117.50268 * 253.40918 * 24 22 19 26 26 C 1.53004 * 117.49623 * 184.75002 * 24 22 19 27 27 N 1.31959 * 120.84066 * 0.26955 * 13 12 11 28 28 H 0.96999 * 119.99916 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.43617 * 0.02562 * 10 9 7 30 30 H 1.08004 * 120.66322 * 180.02562 * 11 10 9 31 31 H 1.07994 * 120.25287 * 180.02562 * 12 11 10 32 32 H 0.97002 * 119.99906 * 354.54509 * 14 13 12 33 33 H 1.08994 * 113.46939 * 321.93419 * 20 19 17 34 34 H 1.09006 * 113.46558 * 92.37153 * 20 19 17 35 35 H 1.08997 * 114.32420 * 220.46272 * 21 20 19 36 36 H 1.09000 * 114.18962 * 87.73124 * 21 20 19 37 37 H 1.08998 * 115.54579 * 39.08654 * 24 22 19 38 38 H 1.09005 * 117.49538 * 0.02562 * 25 24 22 39 39 H 1.08998 * 117.49699 * 145.02209 * 25 24 22 40 40 H 1.09004 * 117.49788 * 214.98413 * 26 24 22 41 41 H 1.08993 * 117.49999 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0085 -3.6520 0.0005 11 6 1.3034 -4.8418 0.0000 12 6 -0.0827 -4.7939 -0.0011 13 6 -0.7280 -3.5552 -0.0021 14 7 -2.1182 -3.5051 -0.0037 15 6 -2.7499 -2.3196 0.1063 16 8 -2.1104 -1.3074 0.3042 17 6 -4.2365 -2.2508 -0.0216 18 8 -4.8760 -3.2632 -0.2195 19 7 -4.8677 -1.0646 0.0829 20 6 -4.4621 0.3414 0.2295 21 6 -5.7991 0.6001 0.9322 22 6 -6.2652 -0.6073 0.1071 23 1 -6.6510 -0.3382 -0.8763 24 6 -7.2000 -1.5450 0.8737 25 6 -8.1656 -2.4045 0.0551 26 6 -8.6944 -1.2167 0.8630 27 7 -0.0356 -2.4318 -0.0074 28 1 -0.4850 0.8400 -0.0004 29 1 3.0885 -3.6561 0.0010 30 1 1.8217 -5.7893 0.0004 31 1 -0.6587 -5.7074 -0.0011 32 1 -2.6330 -4.3233 -0.0840 33 1 -3.5981 0.4784 0.8796 34 1 -4.3626 0.8658 -0.7209 35 1 -6.2763 1.5406 0.6571 36 1 -5.7794 0.4255 2.0080 37 1 -6.7868 -1.9799 1.7837 38 1 -8.1345 -2.3021 -1.0297 39 1 -8.3878 -3.4047 0.4268 40 1 -9.2644 -1.4360 1.7659 41 1 -9.0114 -0.3324 0.3102 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890303864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:11 Heat of formation + Delta-G solvation = 43.847046 kcal Electronic energy + Delta-G solvation = -26149.915873 eV Core-core repulsion = 22418.668638 eV Total energy + Delta-G solvation = -3731.247234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.96302 -40.84476 -39.51853 -38.62515 -37.30968 -36.05299 -34.91754 -32.28620 -31.18576 -30.94090 -27.71252 -27.47794 -25.93347 -23.74192 -23.25199 -23.02880 -22.27598 -21.67090 -20.37373 -19.59630 -18.62833 -18.20167 -17.67876 -17.10678 -16.48471 -16.34193 -16.28094 -16.00618 -15.71343 -15.39062 -14.90711 -14.76328 -14.48275 -14.39405 -13.91896 -13.77425 -13.59706 -13.07988 -12.86775 -12.75582 -12.60374 -12.57579 -12.39796 -12.34376 -12.22346 -11.94834 -11.78354 -11.59717 -11.30890 -10.92735 -10.83344 -10.44442 -9.95486 -9.87388 -9.22576 -8.91611 -8.09449 -6.44041 0.38658 1.03079 1.21368 1.26509 1.42656 1.53431 1.56377 2.27805 2.38288 2.39300 2.95402 2.97513 3.33148 3.46826 3.68537 3.93392 4.00254 4.05611 4.07239 4.27357 4.31170 4.40194 4.47124 4.65049 4.69034 4.80089 4.80682 4.88222 4.92306 4.96268 4.98625 5.02984 5.16667 5.26623 5.26983 5.34190 5.61904 5.70471 5.88220 6.05638 6.24006 6.40741 6.46086 6.69149 6.85102 7.02376 7.29250 8.23765 8.55202 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.004231 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.465514 B = 6615.649163 C = 8366.389550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.015 3.985 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.088 0.912 9 C 0.237 3.763 10 C -0.322 4.322 11 C -0.033 4.033 12 C -0.345 4.345 13 C 0.348 3.652 14 N -0.637 5.637 15 C 0.462 3.538 16 O -0.415 6.415 17 C 0.537 3.463 18 O -0.546 6.546 19 N -0.621 5.621 20 C 0.095 3.905 21 C -0.122 4.122 22 C 0.163 3.837 23 H 0.112 0.888 24 C -0.174 4.174 25 C -0.181 4.181 26 C -0.138 4.138 27 N -0.507 5.507 28 H 0.274 0.726 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.127 0.873 32 H 0.422 0.578 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.706 3.896 1.086 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.211 4.211 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.106 0.894 9 C 0.112 3.888 10 C -0.345 4.345 11 C -0.057 4.057 12 C -0.370 4.370 13 C 0.111 3.889 14 N -0.287 5.287 15 C 0.240 3.760 16 O -0.279 6.279 17 C 0.321 3.679 18 O -0.424 6.424 19 N -0.356 5.356 20 C -0.027 4.027 21 C -0.160 4.160 22 C 0.062 3.938 23 H 0.130 0.870 24 C -0.193 4.193 25 C -0.218 4.218 26 C -0.175 4.175 27 N -0.227 5.227 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.145 0.855 32 H 0.260 0.740 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.139 4.914 1.088 16.906 hybrid contribution 1.003 -1.145 -0.142 1.528 sum -15.136 3.770 0.946 15.627 Atomic orbital electron populations 1.70446 1.07465 1.28396 1.25117 1.26994 0.96021 1.03937 0.94124 0.85348 0.78722 0.76409 0.79699 1.18707 1.19282 1.18735 1.19905 0.94576 0.90361 1.44404 0.89420 1.18861 0.87600 0.93547 0.88797 1.21861 0.99432 0.93665 1.19499 1.21040 0.93162 0.97644 0.93851 1.20948 0.95412 0.95484 1.25183 1.18984 0.83928 0.91593 0.94424 1.43024 1.04321 1.09975 1.71334 1.20729 0.88627 0.85256 0.81415 1.91132 1.65837 1.32808 1.38154 1.19735 0.87392 0.83158 0.77654 1.90679 1.67761 1.34434 1.49561 1.49713 1.11071 1.05851 1.68981 1.23212 0.99897 0.77952 1.01643 1.23400 0.93806 0.98626 1.00145 1.22659 0.80092 0.91563 0.99505 0.87033 1.22293 0.92533 1.03279 1.01197 1.22907 1.03916 0.96354 0.98589 1.23031 0.92492 0.99435 1.02585 1.68564 1.07682 1.24912 1.21561 0.91487 0.87254 0.84271 0.85464 0.74003 0.91030 0.88196 0.85023 0.88601 0.89708 0.89033 0.89604 0.87484 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -38.07 9.09 21.84 0.20 -37.87 16 2 C 0.01 0.77 5.50 85.29 0.47 1.24 16 3 Si 0.98 38.90 29.56 68.60 2.03 40.93 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.46 -25.72 9.14 23.47 0.21 -25.51 16 8 H 0.09 4.56 7.85 -2.91 -0.02 4.53 16 9 C 0.24 13.61 6.55 40.21 0.26 13.88 16 10 C -0.32 -16.22 9.83 22.87 0.22 -16.00 16 11 C -0.03 -1.46 10.15 22.40 0.23 -1.23 16 12 C -0.34 -15.50 9.96 22.72 0.23 -15.27 16 13 C 0.35 17.67 7.41 133.28 0.99 18.66 16 14 N -0.64 -28.09 5.37 -309.72 -1.66 -29.75 16 15 C 0.46 20.60 7.83 87.24 0.68 21.29 16 16 O -0.42 -20.93 11.03 -3.27 -0.04 -20.96 16 17 C 0.54 20.29 8.01 87.24 0.70 20.99 16 18 O -0.55 -21.42 16.80 -3.30 -0.06 -21.48 16 19 N -0.62 -18.71 3.57 -835.89 -2.98 -21.69 16 20 C 0.09 2.37 7.69 83.09 0.64 3.01 16 21 C -0.12 -1.96 8.02 30.84 0.25 -1.71 16 22 C 0.16 3.36 4.12 41.79 0.17 3.53 16 23 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 24 C -0.17 -3.62 5.11 -10.79 -0.06 -3.67 16 25 C -0.18 -3.57 10.25 30.62 0.31 -3.26 16 26 C -0.14 -1.89 10.25 30.62 0.31 -1.58 16 27 N -0.51 -29.24 5.75 -186.43 -1.07 -30.31 16 28 H 0.27 13.82 8.29 -92.71 -0.77 13.05 16 29 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 30 H 0.14 4.93 8.06 -2.91 -0.02 4.90 16 31 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.42 15.95 8.18 -92.71 -0.76 15.19 16 33 H 0.07 2.22 7.21 -2.39 -0.02 2.20 16 34 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.13 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.59 8.12 -2.39 -0.02 1.57 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -72.92 351.25 2.35 -70.56 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.31 Total: 36.20 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.63 Total: 14.37 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -5.52 Total: -119.63 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.09 Total: -42.44 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -72.92 2.35 -70.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890303864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.410 kcal (2) G-P(sol) polarization free energy of solvation -72.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds