Wall clock time and date at job start Tue Mar 31 2020 11:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 110.91209 * 2 1 4 4 C 1.34776 * 119.99589 * 56.03757 * 3 2 1 5 5 O 1.21354 * 120.00332 * 0.02562 * 4 3 2 6 6 C 1.49369 * 119.99685 * 179.97438 * 4 3 2 7 7 O 1.21364 * 119.99916 * 0.02562 * 6 4 3 8 8 N 1.34770 * 120.00019 * 179.97438 * 6 4 3 9 9 C 1.39116 * 120.00125 * 184.96076 * 8 6 4 10 10 C 1.39714 * 119.57933 * 174.69680 * 9 8 6 11 11 C 1.38651 * 119.49276 * 180.02562 * 10 9 8 12 12 C 1.38346 * 118.67168 * 359.97438 * 11 10 9 13 13 C 1.40602 * 119.13594 * 0.02562 * 12 11 10 14 14 C 1.41337 * 119.78540 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00139 * 5.23538 * 14 13 12 16 16 C 1.40031 * 120.00112 * 185.22783 * 14 13 12 17 17 N 1.30738 * 119.99545 * 354.78708 * 16 14 13 18 18 Si 1.86795 * 119.99922 * 174.78783 * 16 14 13 19 19 H 1.48501 * 109.47226 * 94.99999 * 18 16 14 20 20 H 1.48512 * 109.47006 * 215.00039 * 18 16 14 21 21 H 1.48500 * 109.47344 * 334.99751 * 18 16 14 22 22 N 1.31937 * 119.57580 * 354.42248 * 9 8 6 23 23 C 1.54628 * 111.07578 * 123.99140 * 2 1 3 24 24 C 1.51107 * 104.72286 * 93.41284 * 23 2 1 25 25 C 1.30526 * 111.10171 * 16.43951 * 24 23 2 26 26 C 1.51103 * 111.10894 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47338 * 60.69523 * 1 2 3 28 28 H 1.08998 * 109.46941 * 180.70412 * 1 2 3 29 29 H 1.09011 * 109.46777 * 300.69561 * 1 2 3 30 30 H 0.97001 * 119.99804 * 236.03871 * 3 2 1 31 31 H 0.97001 * 120.00250 * 5.24047 * 8 6 4 32 32 H 1.07995 * 120.24887 * 359.97431 * 10 9 8 33 33 H 1.07994 * 120.66651 * 180.02562 * 11 10 9 34 34 H 1.07994 * 120.43345 * 179.97438 * 12 11 10 35 35 H 0.97005 * 119.99285 * 179.97438 * 17 16 14 36 36 H 1.08999 * 110.39190 * 212.21907 * 23 2 1 37 37 H 1.08996 * 110.39054 * 334.60666 * 23 2 1 38 38 H 1.07995 * 124.44777 * 196.45830 * 24 23 2 39 39 H 1.08005 * 124.44567 * 180.02562 * 25 24 23 40 40 H 1.08989 * 110.39050 * 224.75614 * 26 25 24 41 41 H 1.09001 * 110.48172 * 102.42330 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3686 0.0000 4 6 1.6843 2.2308 0.9681 5 8 0.9197 1.8734 1.8400 6 6 2.2179 3.6259 0.9685 7 8 2.9830 3.9832 0.0967 8 7 1.8490 4.4882 1.9362 9 6 2.2627 5.8153 1.8802 10 6 1.7854 6.7270 2.8252 11 6 2.1985 8.0492 2.7673 12 6 3.0776 8.4269 1.7680 13 6 3.5219 7.4623 0.8466 14 6 4.4196 7.8332 -0.1801 15 1 4.8281 8.8327 -0.2053 16 6 4.7797 6.9047 -1.1645 17 7 4.3672 5.6671 -1.0779 18 14 5.8493 7.4345 -2.6014 19 1 7.2711 7.1317 -2.2982 20 1 5.4362 6.6988 -3.8236 21 1 5.6907 8.8939 -2.8250 22 7 3.1050 6.1956 0.9386 23 6 2.0861 -0.8066 1.1963 24 6 2.3053 -2.1991 0.6519 25 6 2.3048 -2.1988 -0.6534 26 6 2.0845 -0.8063 -1.1972 27 1 -0.3634 0.5030 -0.8961 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8838 30 1 2.6644 1.6541 -0.6968 31 1 1.2983 4.1827 2.6740 32 1 1.0993 6.4043 3.5942 33 1 1.8418 8.7698 3.4883 34 1 3.4175 9.4494 1.6962 35 1 4.6164 5.0241 -1.7601 36 1 3.0292 -0.3794 1.5369 37 1 1.3614 -0.8271 2.0102 38 1 2.4440 -3.0789 1.2625 39 1 2.4429 -3.0785 -1.2646 40 1 1.3592 -0.8266 -2.0104 41 1 3.0261 -0.3772 -1.5398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890360337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:02 Heat of formation + Delta-G solvation = 13.899836 kcal Electronic energy + Delta-G solvation = -26044.461365 eV Core-core repulsion = 22311.915523 eV Total energy + Delta-G solvation = -3732.545843 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64664 -39.30514 -38.09820 -37.10719 -34.57271 -33.73285 -32.99581 -30.40583 -30.19883 -29.18340 -28.47704 -26.10913 -25.71200 -24.38096 -21.86087 -21.22852 -19.85215 -19.77317 -18.80915 -18.16484 -17.21396 -16.63848 -16.07663 -15.65461 -15.29595 -15.08985 -14.71692 -14.48830 -13.87009 -13.75596 -13.63582 -13.39436 -13.10279 -12.86404 -12.46323 -12.34323 -12.11827 -12.01528 -11.98058 -11.75000 -11.38679 -11.22618 -11.17473 -10.99678 -10.72353 -10.66783 -10.51964 -9.99587 -9.77171 -9.21305 -9.09324 -9.05508 -8.93673 -8.04007 -7.33448 -7.06234 -6.23436 -4.45628 1.91841 2.04521 2.76432 2.81931 3.08182 3.13355 3.15730 3.23342 3.95784 4.01032 4.03535 4.28621 4.49413 4.78797 4.85933 4.98870 5.04624 5.18285 5.45214 5.51389 5.57737 5.67548 5.76146 5.82335 5.92132 5.95439 6.06517 6.22840 6.29721 6.42621 6.50170 6.57684 6.64977 6.74981 6.79197 7.15204 7.31757 7.50546 7.52737 7.75762 7.90631 8.05202 8.18793 8.36718 8.62805 8.93246 9.01284 10.13883 10.40546 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.003977 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.415323 B = 7038.629595 C = 8654.218459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.169 3.831 3 N -0.696 5.696 4 C 0.512 3.488 5 O -0.529 6.529 6 C 0.465 3.535 7 O -0.387 6.387 8 N -0.639 5.639 9 C 0.368 3.632 10 C -0.349 4.349 11 C -0.036 4.036 12 C -0.301 4.301 13 C 0.271 3.729 14 C -0.424 4.424 15 H 0.084 0.916 16 C 0.060 3.940 17 N -0.663 5.663 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.263 1.263 22 N -0.475 5.475 23 C -0.106 4.106 24 C -0.158 4.158 25 C -0.167 4.167 26 C -0.102 4.102 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.414 0.586 31 H 0.411 0.589 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.271 0.729 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 -13.943 -0.427 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.084 3.916 3 N -0.350 5.350 4 C 0.294 3.706 5 O -0.405 6.405 6 C 0.242 3.758 7 O -0.250 6.250 8 N -0.287 5.287 9 C 0.130 3.870 10 C -0.374 4.374 11 C -0.060 4.060 12 C -0.324 4.324 13 C 0.146 3.854 14 C -0.455 4.455 15 H 0.102 0.898 16 C -0.169 4.169 17 N -0.282 5.282 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.187 1.187 22 N -0.194 5.194 23 C -0.144 4.144 24 C -0.176 4.176 25 C -0.186 4.186 26 C -0.140 4.140 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.251 0.749 31 H 0.247 0.753 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.099 0.901 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.816 -14.782 -1.254 15.318 hybrid contribution 0.142 0.682 0.088 0.703 sum -3.674 -14.099 -1.166 14.617 Atomic orbital electron populations 1.22120 0.92889 1.02533 1.03852 1.21141 0.94509 0.80581 0.95416 1.45823 1.48634 1.11065 1.29484 1.20777 0.81122 0.87038 0.81680 1.90645 1.34710 1.78584 1.36588 1.20168 0.84928 0.85630 0.85114 1.91212 1.26737 1.74856 1.32210 1.42994 1.51941 1.07945 1.25845 1.18553 0.92934 0.82601 0.92902 1.20516 1.15140 0.94834 1.06943 1.20585 0.95135 0.94226 0.96090 1.21656 1.08489 0.99740 1.02484 1.18368 0.90359 0.85874 0.90779 1.19591 1.21369 0.98422 1.06123 0.89835 1.26160 0.96523 0.94963 0.99235 1.70312 1.28106 1.01325 1.28444 0.86474 0.80457 0.79994 0.80879 1.19706 1.20245 1.18652 1.68648 1.12995 1.17482 1.20289 1.21760 1.01817 0.92494 0.98280 1.23276 1.00332 0.97746 0.96253 1.23116 1.01992 0.97268 0.96193 1.21628 1.01744 0.93258 0.97350 0.92365 0.91614 0.89707 0.74917 0.75331 0.88728 0.88365 0.88373 0.91696 0.90156 0.89976 0.85675 0.85542 0.90128 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.36 37.16 0.31 -1.49 16 2 C 0.17 1.97 0.93 -130.10 -0.12 1.85 16 3 N -0.70 -9.66 5.14 -46.47 -0.24 -9.90 16 4 C 0.51 8.59 7.42 -11.62 -0.09 8.51 16 5 O -0.53 -9.13 13.96 5.49 0.08 -9.05 16 6 C 0.47 9.51 7.84 -11.63 -0.09 9.42 16 7 O -0.39 -9.15 12.24 5.49 0.07 -9.08 16 8 N -0.64 -13.21 5.37 -11.83 -0.06 -13.27 16 9 C 0.37 8.99 7.42 -155.08 -1.15 7.84 16 10 C -0.35 -7.84 9.96 -38.88 -0.39 -8.23 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.30 -7.44 9.83 -38.65 -0.38 -7.82 16 13 C 0.27 7.48 6.55 -85.00 -0.56 6.92 16 14 C -0.42 -11.40 9.13 -37.73 -0.34 -11.74 16 15 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 16 C 0.06 1.53 5.49 -17.35 -0.10 1.43 16 17 N -0.66 -17.56 9.01 55.55 0.50 -17.06 16 18 Si 0.90 18.66 29.56 -169.99 -5.03 13.63 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 22 N -0.47 -13.08 5.75 -10.27 -0.06 -13.14 16 23 C -0.11 -1.21 5.37 -26.83 -0.14 -1.35 16 24 C -0.16 -1.46 10.78 -35.69 -0.38 -1.85 16 25 C -0.17 -1.45 10.77 -35.70 -0.38 -1.84 16 26 C -0.10 -0.97 6.04 -26.83 -0.16 -1.13 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.16 6.00 -51.92 -0.31 0.84 16 30 H 0.41 5.59 7.81 -40.82 -0.32 5.27 16 31 H 0.41 7.26 8.18 -40.82 -0.33 6.93 16 32 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.27 6.63 8.29 -40.82 -0.34 6.30 16 36 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.08 0.68 7.91 -51.94 -0.41 0.27 16 41 H 0.08 0.79 7.82 -51.93 -0.41 0.38 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -30.83 344.82 -9.04 -39.87 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -5.12 Total: 13.50 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -4.38 Total: -0.69 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.14 Total: -53.38 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.14 Total: -18.13 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.83 -9.04 -39.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890360337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.773 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds