Wall clock time and date at job start Tue Mar 31 2020 11:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 110.91209 * 2 1 4 4 C 1.34776 * 119.99589 * 56.03757 * 3 2 1 5 5 O 1.21354 * 120.00332 * 0.02562 * 4 3 2 6 6 C 1.49369 * 119.99685 * 179.97438 * 4 3 2 7 7 O 1.21364 * 119.99916 * 0.02562 * 6 4 3 8 8 N 1.34770 * 120.00019 * 179.97438 * 6 4 3 9 9 C 1.39116 * 120.00125 * 184.96076 * 8 6 4 10 10 C 1.39714 * 119.57933 * 174.69680 * 9 8 6 11 11 C 1.38651 * 119.49276 * 180.02562 * 10 9 8 12 12 C 1.38346 * 118.67168 * 359.97438 * 11 10 9 13 13 C 1.40602 * 119.13594 * 0.02562 * 12 11 10 14 14 C 1.41337 * 119.78540 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00139 * 5.23538 * 14 13 12 16 16 C 1.40031 * 120.00112 * 185.22783 * 14 13 12 17 17 N 1.30738 * 119.99545 * 354.78708 * 16 14 13 18 18 Si 1.86795 * 119.99922 * 174.78783 * 16 14 13 19 19 H 1.48501 * 109.47226 * 94.99999 * 18 16 14 20 20 H 1.48512 * 109.47006 * 215.00039 * 18 16 14 21 21 H 1.48500 * 109.47344 * 334.99751 * 18 16 14 22 22 N 1.31937 * 119.57580 * 354.42248 * 9 8 6 23 23 C 1.54628 * 111.07578 * 123.99140 * 2 1 3 24 24 C 1.51107 * 104.72286 * 93.41284 * 23 2 1 25 25 C 1.30526 * 111.10171 * 16.43951 * 24 23 2 26 26 C 1.51103 * 111.10894 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47338 * 60.69523 * 1 2 3 28 28 H 1.08998 * 109.46941 * 180.70412 * 1 2 3 29 29 H 1.09011 * 109.46777 * 300.69561 * 1 2 3 30 30 H 0.97001 * 119.99804 * 236.03871 * 3 2 1 31 31 H 0.97001 * 120.00250 * 5.24047 * 8 6 4 32 32 H 1.07995 * 120.24887 * 359.97431 * 10 9 8 33 33 H 1.07994 * 120.66651 * 180.02562 * 11 10 9 34 34 H 1.07994 * 120.43345 * 179.97438 * 12 11 10 35 35 H 0.97005 * 119.99285 * 179.97438 * 17 16 14 36 36 H 1.08999 * 110.39190 * 212.21907 * 23 2 1 37 37 H 1.08996 * 110.39054 * 334.60666 * 23 2 1 38 38 H 1.07995 * 124.44777 * 196.45830 * 24 23 2 39 39 H 1.08005 * 124.44567 * 180.02562 * 25 24 23 40 40 H 1.08989 * 110.39050 * 224.75614 * 26 25 24 41 41 H 1.09001 * 110.48172 * 102.42330 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3686 0.0000 4 6 1.6843 2.2308 0.9681 5 8 0.9197 1.8734 1.8400 6 6 2.2179 3.6259 0.9685 7 8 2.9830 3.9832 0.0967 8 7 1.8490 4.4882 1.9362 9 6 2.2627 5.8153 1.8802 10 6 1.7854 6.7270 2.8252 11 6 2.1985 8.0492 2.7673 12 6 3.0776 8.4269 1.7680 13 6 3.5219 7.4623 0.8466 14 6 4.4196 7.8332 -0.1801 15 1 4.8281 8.8327 -0.2053 16 6 4.7797 6.9047 -1.1645 17 7 4.3672 5.6671 -1.0779 18 14 5.8493 7.4345 -2.6014 19 1 7.2711 7.1317 -2.2982 20 1 5.4362 6.6988 -3.8236 21 1 5.6907 8.8939 -2.8250 22 7 3.1050 6.1956 0.9386 23 6 2.0861 -0.8066 1.1963 24 6 2.3053 -2.1991 0.6519 25 6 2.3048 -2.1988 -0.6534 26 6 2.0845 -0.8063 -1.1972 27 1 -0.3634 0.5030 -0.8961 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8838 30 1 2.6644 1.6541 -0.6968 31 1 1.2983 4.1827 2.6740 32 1 1.0993 6.4043 3.5942 33 1 1.8418 8.7698 3.4883 34 1 3.4175 9.4494 1.6962 35 1 4.6164 5.0241 -1.7601 36 1 3.0292 -0.3794 1.5369 37 1 1.3614 -0.8271 2.0102 38 1 2.4440 -3.0789 1.2625 39 1 2.4429 -3.0785 -1.2646 40 1 1.3592 -0.8266 -2.0104 41 1 3.0261 -0.3772 -1.5398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890360337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:01 Heat of formation + Delta-G solvation = -5.094529 kcal Electronic energy + Delta-G solvation = -26045.285023 eV Core-core repulsion = 22311.915523 eV Total energy + Delta-G solvation = -3733.369500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94457 -40.75744 -39.54937 -38.65769 -36.21873 -35.18387 -34.62761 -32.27778 -31.28783 -30.95386 -29.28599 -27.67682 -26.98223 -25.84368 -23.58892 -22.96555 -21.30199 -20.77405 -20.12856 -19.50229 -18.76871 -18.13593 -17.37377 -16.95821 -16.74440 -16.44657 -16.29397 -16.11753 -15.60262 -15.22650 -14.99210 -14.67025 -14.64076 -14.13725 -13.86458 -13.75752 -13.36562 -13.09417 -12.99800 -12.90441 -12.73635 -12.69218 -12.57943 -12.46047 -12.30547 -12.12202 -11.82943 -11.74493 -11.57451 -10.91644 -10.50941 -10.32032 -9.94016 -9.83658 -9.19605 -8.92227 -8.09758 -6.42884 0.38751 1.02943 1.27030 1.34744 1.39728 1.42683 1.52859 1.57202 2.27619 2.38960 2.65405 2.97666 3.36905 3.55304 3.69467 3.90012 4.00623 4.30737 4.32761 4.33236 4.61943 4.65502 4.67512 4.77150 4.77930 4.81427 4.90428 4.93988 4.98763 5.00622 5.05210 5.26440 5.27133 5.40303 5.57786 5.63450 5.71507 5.89560 5.95982 6.02752 6.18275 6.30265 6.55257 6.72692 6.87587 7.03598 7.30009 8.24745 8.55145 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.003977 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.415323 B = 7038.629595 C = 8654.218459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 N -0.683 5.683 4 C 0.522 3.478 5 O -0.534 6.534 6 C 0.458 3.542 7 O -0.422 6.422 8 N -0.633 5.633 9 C 0.347 3.653 10 C -0.343 4.343 11 C -0.033 4.033 12 C -0.322 4.322 13 C 0.237 3.763 14 C -0.462 4.462 15 H 0.087 0.913 16 C 0.015 3.985 17 N -0.695 5.695 18 Si 0.976 3.024 19 H -0.267 1.267 20 H -0.271 1.271 21 H -0.258 1.258 22 N -0.506 5.506 23 C -0.106 4.106 24 C -0.167 4.167 25 C -0.156 4.156 26 C -0.102 4.102 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.416 0.584 31 H 0.424 0.576 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.274 0.726 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.144 0.856 39 H 0.153 0.847 40 H 0.095 0.905 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 -15.250 -0.835 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.075 3.925 3 N -0.336 5.336 4 C 0.302 3.698 5 O -0.412 6.412 6 C 0.236 3.764 7 O -0.286 6.286 8 N -0.283 5.283 9 C 0.109 3.891 10 C -0.368 4.368 11 C -0.057 4.057 12 C -0.345 4.345 13 C 0.111 3.889 14 C -0.493 4.493 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.314 5.314 18 Si 0.797 3.203 19 H -0.192 1.192 20 H -0.196 1.196 21 H -0.182 1.182 22 N -0.226 5.226 23 C -0.144 4.144 24 C -0.185 4.185 25 C -0.174 4.174 26 C -0.139 4.139 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.253 0.747 31 H 0.262 0.738 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.170 0.830 40 H 0.114 0.886 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.271 -16.123 -1.635 16.759 hybrid contribution 0.178 1.062 0.335 1.128 sum -4.093 -15.061 -1.300 15.661 Atomic orbital electron populations 1.22069 0.92578 1.03490 1.02790 1.21445 0.94805 0.79212 0.97050 1.45860 1.47798 1.11649 1.28285 1.20050 0.81345 0.85808 0.82551 1.90651 1.35140 1.78315 1.37059 1.20842 0.84232 0.86969 0.84327 1.91206 1.28190 1.75910 1.33317 1.42991 1.51830 1.06974 1.26487 1.19014 0.92830 0.84304 0.92969 1.20963 1.14525 0.94626 1.06680 1.21046 0.93770 0.95073 0.95847 1.21855 1.09618 0.99923 1.03102 1.18863 0.91268 0.86768 0.91957 1.19921 1.22730 0.99182 1.07454 0.89472 1.26989 0.97649 0.94785 1.01648 1.70462 1.29250 1.02297 1.29420 0.85292 0.78341 0.79585 0.77071 1.19151 1.19557 1.18172 1.68605 1.14331 1.17863 1.21829 1.21717 1.00652 0.94100 0.97968 1.23313 1.01493 0.96940 0.96774 1.23322 1.00611 0.97403 0.96088 1.21663 1.02142 0.93403 0.96669 0.92146 0.89608 0.91992 0.74707 0.73776 0.85280 0.84288 0.87351 0.91526 0.91842 0.90997 0.83865 0.82959 0.88623 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.36 71.98 0.60 -2.70 16 2 C 0.16 3.55 0.93 4.71 0.00 3.55 16 3 N -0.68 -18.92 5.14 -419.30 -2.15 -21.07 16 4 C 0.52 17.70 7.42 87.24 0.65 18.34 16 5 O -0.53 -18.44 13.96 -3.26 -0.05 -18.49 16 6 C 0.46 19.21 7.84 87.24 0.68 19.89 16 7 O -0.42 -20.67 12.24 -3.29 -0.04 -20.71 16 8 N -0.63 -26.43 5.37 -309.70 -1.66 -28.10 16 9 C 0.35 17.09 7.42 133.30 0.99 18.08 16 10 C -0.34 -14.96 9.96 22.73 0.23 -14.73 16 11 C -0.03 -1.45 10.15 22.39 0.23 -1.22 16 12 C -0.32 -16.05 9.83 22.87 0.22 -15.83 16 13 C 0.24 13.46 6.55 40.20 0.26 13.72 16 14 C -0.46 -25.65 9.13 23.47 0.21 -25.44 16 15 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 16 C 0.01 0.77 5.49 85.29 0.47 1.24 16 17 N -0.69 -38.08 9.01 21.84 0.20 -37.88 16 18 Si 0.98 39.09 29.56 68.60 2.03 41.12 16 19 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 22 N -0.51 -28.74 5.75 -186.41 -1.07 -29.81 16 23 C -0.11 -2.35 5.37 30.53 0.16 -2.19 16 24 C -0.17 -2.74 10.78 26.26 0.28 -2.45 16 25 C -0.16 -2.24 10.77 26.26 0.28 -1.96 16 26 C -0.10 -1.69 6.04 30.53 0.18 -1.51 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.66 6.00 -2.38 -0.01 1.64 16 30 H 0.42 11.32 7.81 -92.71 -0.72 10.60 16 31 H 0.42 14.85 8.18 -92.71 -0.76 14.09 16 32 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 33 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 34 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 35 H 0.27 13.83 8.29 -92.70 -0.77 13.06 16 36 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 37 H 0.07 1.71 7.91 -2.39 -0.02 1.69 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.10 1.34 7.91 -2.39 -0.02 1.32 16 41 H 0.09 1.45 7.82 -2.39 -0.02 1.43 16 Total: -1.00 -68.82 344.82 2.32 -66.51 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.40 Total: 41.63 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.47 Total: 6.80 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -4.69 Total: -116.86 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.09 Total: -39.20 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -68.82 2.32 -66.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890360337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.412 kcal (2) G-P(sol) polarization free energy of solvation -68.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds