Wall clock time and date at job start Tue Mar 31 2020 10:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86799 * 120.00055 * 2 1 4 4 H 1.48500 * 109.47449 * 270.00498 * 3 2 1 5 5 H 1.48500 * 109.46880 * 30.00156 * 3 2 1 6 6 H 1.48500 * 109.47204 * 149.99826 * 3 2 1 7 7 C 1.40029 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.41339 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.40631 * 119.78393 * 179.97438 * 9 7 2 11 11 C 1.38307 * 119.13530 * 180.02562 * 10 9 7 12 12 C 1.38696 * 118.66671 * 359.74583 * 11 10 9 13 13 C 1.39662 * 119.49564 * 0.49973 * 12 11 10 14 14 N 1.39115 * 119.57784 * 179.76620 * 13 12 11 15 15 C 1.34776 * 120.00421 * 185.38776 * 14 13 12 16 16 O 1.21358 * 119.99385 * 354.85367 * 15 14 13 17 17 C 1.49366 * 120.00611 * 174.85642 * 15 14 13 18 18 O 1.21355 * 119.99443 * 359.71919 * 17 15 14 19 19 N 1.34771 * 120.00246 * 179.97438 * 17 15 14 20 20 C 1.46495 * 119.99847 * 179.97438 * 19 17 15 21 21 C 1.50707 * 109.46925 * 179.97438 * 20 19 17 22 22 C 1.30524 * 124.44390 * 94.70460 * 21 20 19 23 23 C 1.51112 * 111.10232 * 179.87708 * 22 21 20 24 24 C 1.54633 * 104.77829 * 343.93315 * 23 22 21 25 25 C 1.51099 * 124.44810 * 274.99994 * 21 20 19 26 26 N 1.31957 * 120.84614 * 359.49268 * 13 12 11 27 27 H 0.97003 * 120.00034 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.43234 * 0.02562 * 10 9 7 29 29 H 1.07996 * 120.66657 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.25099 * 180.26231 * 12 11 10 31 31 H 0.97008 * 120.00178 * 5.38313 * 14 13 12 32 32 H 0.97001 * 119.99785 * 0.02562 * 19 17 15 33 33 H 1.08997 * 109.47522 * 299.99729 * 20 19 17 34 34 H 1.09004 * 109.47139 * 60.00393 * 20 19 17 35 35 H 1.07997 * 124.44878 * 0.02562 * 22 21 20 36 36 H 1.08995 * 110.52200 * 225.01658 * 23 22 21 37 37 H 1.09001 * 110.18866 * 102.67503 * 23 22 21 38 38 H 1.08996 * 111.03546 * 266.40392 * 24 23 22 39 39 H 1.09003 * 111.03620 * 142.46962 * 24 23 22 40 40 H 1.08994 * 110.38813 * 315.23108 * 25 21 20 41 41 H 1.09007 * 110.38410 * 77.60874 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4402 0.7001 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0086 -3.6520 -0.0016 11 6 1.3035 -4.8418 -0.0022 12 6 -0.0826 -4.7938 0.0038 13 6 -0.7278 -3.5552 -0.0004 14 7 -2.1180 -3.5050 0.0006 15 6 -2.7498 -2.3200 -0.1131 16 8 -2.1091 -1.2893 -0.1223 17 6 -4.2384 -2.2750 -0.2276 18 8 -4.8786 -3.3060 -0.2235 19 7 -4.8701 -1.0899 -0.3407 20 6 -6.3300 -1.0460 -0.4536 21 6 -6.7822 0.3872 -0.5662 22 6 -7.0068 1.0041 -1.6944 23 6 -7.4499 2.4291 -1.4565 24 6 -7.8576 2.4717 0.0345 25 6 -7.0289 1.3007 0.6119 26 7 -0.0356 -2.4317 0.0000 27 1 -0.4850 0.8401 0.0004 28 1 3.0886 -3.6561 -0.0021 29 1 1.8219 -5.7892 -0.0026 30 1 -0.6586 -5.7074 0.0078 31 1 -2.6328 -4.3231 0.0831 32 1 -4.3580 -0.2661 -0.3481 33 1 -6.6426 -1.5967 -1.3408 34 1 -6.7767 -1.4990 0.4315 35 1 -6.8934 0.5543 -2.6697 36 1 -8.3017 2.6752 -2.0904 37 1 -6.6246 3.1159 -1.6443 38 1 -8.9259 2.2910 0.1533 39 1 -7.5692 3.4181 0.4920 40 1 -7.5946 0.7798 1.3843 41 1 -6.0837 1.6661 1.0134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890382932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:23 Heat of formation + Delta-G solvation = 3.961321 kcal Electronic energy + Delta-G solvation = -25399.011933 eV Core-core repulsion = 21666.035124 eV Total energy + Delta-G solvation = -3732.976809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.22986 -39.08144 -38.40262 -37.18040 -34.98208 -34.04882 -33.03540 -30.39743 -30.26410 -29.20298 -28.63760 -26.17454 -25.53474 -23.66729 -21.65392 -21.16468 -20.97974 -19.72426 -18.68318 -18.00926 -17.17910 -16.58893 -15.97194 -15.67978 -15.60144 -15.41497 -14.70329 -14.48812 -14.44252 -14.06638 -13.67843 -13.34028 -13.06877 -12.95050 -12.87397 -12.10907 -12.03266 -12.00726 -11.88738 -11.48580 -11.42357 -11.32134 -11.20402 -11.04932 -10.99409 -10.69217 -10.52170 -9.98069 -9.79884 -9.22411 -9.13288 -9.09202 -8.87308 -8.03424 -7.33025 -7.05761 -6.22049 -4.45380 1.73443 1.92721 2.82095 2.98132 3.08891 3.13291 3.15884 3.23526 3.97421 4.01491 4.17450 4.26804 4.32006 4.77352 4.82809 4.86698 5.01384 5.11713 5.23192 5.43346 5.49344 5.55933 5.60608 5.69225 5.76819 5.96066 5.96919 6.06713 6.26241 6.31720 6.43859 6.57872 6.61084 6.75488 6.79523 7.15480 7.29443 7.50245 7.53094 7.76315 7.90337 8.04805 8.17717 8.37007 8.63136 8.93669 9.01785 10.14711 10.41294 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.003832 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.114698 B = 7305.423350 C = 9336.531305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.663 5.663 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.424 4.424 8 H 0.083 0.917 9 C 0.271 3.729 10 C -0.300 4.300 11 C -0.036 4.036 12 C -0.349 4.349 13 C 0.368 3.632 14 N -0.639 5.639 15 C 0.467 3.533 16 O -0.387 6.387 17 C 0.508 3.492 18 O -0.535 6.535 19 N -0.701 5.701 20 C 0.169 3.831 21 C -0.158 4.158 22 C -0.136 4.136 23 C -0.103 4.103 24 C -0.124 4.124 25 C -0.093 4.093 26 N -0.475 5.475 27 H 0.272 0.728 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.411 0.589 32 H 0.415 0.585 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.378 4.444 -0.945 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.281 5.281 2 C -0.169 4.169 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.102 0.898 9 C 0.146 3.854 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.375 4.375 13 C 0.130 3.870 14 N -0.287 5.287 15 C 0.243 3.757 16 O -0.249 6.249 17 C 0.290 3.710 18 O -0.412 6.412 19 N -0.355 5.355 20 C 0.046 3.954 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.140 4.140 24 C -0.162 4.162 25 C -0.130 4.130 26 N -0.194 5.194 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.247 0.753 32 H 0.251 0.749 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.032 5.505 -0.950 16.036 hybrid contribution 0.726 -0.277 -0.042 0.778 sum -14.306 5.227 -0.992 15.263 Atomic orbital electron populations 1.70309 1.05929 1.27354 1.24558 1.26163 0.95118 1.00652 0.94973 0.86488 0.80587 0.81669 0.79047 1.19630 1.20307 1.18710 1.19590 0.94131 0.89308 1.42422 0.89843 1.18373 0.86986 0.92061 0.87989 1.21655 0.98668 0.93467 1.18548 1.20585 0.93074 0.96671 0.95704 1.20516 0.94834 0.94952 1.27163 1.18541 0.82656 0.91227 0.94532 1.42995 1.05270 1.09202 1.71263 1.20114 0.87178 0.86077 0.82335 1.91210 1.64603 1.30712 1.38413 1.20841 0.89695 0.83768 0.76724 1.90695 1.68250 1.33148 1.49119 1.45794 1.07283 1.09380 1.73073 1.19985 0.79853 0.92706 1.02808 1.22003 1.02607 0.95086 0.96184 1.23323 0.98462 0.95714 0.98016 1.21393 1.01068 0.94805 0.96704 1.22440 0.99949 0.98529 0.95280 1.21305 1.00500 0.94808 0.96404 1.68645 1.07276 1.23168 1.20331 0.91681 0.88376 0.88360 0.88714 0.75311 0.74860 0.90575 0.90545 0.85567 0.91003 0.90261 0.91120 0.90826 0.91021 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.63 8.99 55.55 0.50 -17.13 16 2 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 3 Si 0.90 18.71 29.56 -169.99 -5.02 13.68 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.42 -11.41 9.14 -37.73 -0.34 -11.75 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.27 7.50 6.55 -84.99 -0.56 6.94 16 10 C -0.30 -7.45 9.83 -38.65 -0.38 -7.83 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.21 16 12 C -0.35 -7.89 9.95 -38.88 -0.39 -8.28 16 13 C 0.37 9.06 7.42 -155.09 -1.15 7.91 16 14 N -0.64 -13.39 5.37 -11.84 -0.06 -13.46 16 15 C 0.47 9.70 7.84 -11.63 -0.09 9.61 16 16 O -0.39 -9.24 12.24 5.49 0.07 -9.17 16 17 C 0.51 8.82 7.89 -11.63 -0.09 8.73 16 18 O -0.54 -9.83 16.48 5.49 0.09 -9.74 16 19 N -0.70 -9.96 5.54 -61.94 -0.34 -10.30 16 20 C 0.17 1.95 6.10 -5.19 -0.03 1.92 16 21 C -0.16 -1.56 5.53 -100.73 -0.56 -2.12 16 22 C -0.14 -1.24 10.59 -35.69 -0.38 -1.62 16 23 C -0.10 -0.79 6.81 -26.82 -0.18 -0.97 16 24 C -0.12 -0.92 7.19 -25.01 -0.18 -1.10 16 25 C -0.09 -0.82 6.76 -26.83 -0.18 -1.00 16 26 N -0.47 -13.15 5.73 -10.28 -0.06 -13.21 16 27 H 0.27 6.68 8.29 -40.82 -0.34 6.34 16 28 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 29 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.41 7.39 8.18 -40.82 -0.33 7.06 16 32 H 0.41 5.86 7.93 -40.82 -0.32 5.54 16 33 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -31.31 352.09 -9.81 -41.13 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -5.28 Total: 12.25 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -5.01 Total: 0.65 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.03 Total: -54.10 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.16 Total: -18.91 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.31 -9.81 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890382932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.087 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds