Wall clock time and date at job start Tue Mar 31 2020 10:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86807 * 119.99738 * 2 1 4 4 H 1.48499 * 109.46888 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47106 * 119.99429 * 3 2 1 6 6 H 1.48499 * 109.46802 * 239.99430 * 3 2 1 7 7 C 1.40032 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99469 * 1.92612 * 7 2 1 9 9 C 1.41332 * 120.00122 * 181.92239 * 7 2 1 10 10 C 1.40628 * 119.78437 * 187.00267 * 9 7 2 11 11 C 1.38311 * 119.13176 * 179.76753 * 10 9 7 12 12 C 1.38699 * 118.67072 * 0.50037 * 11 10 9 13 13 C 1.39663 * 119.49413 * 359.74299 * 12 11 10 14 14 N 1.39116 * 119.58058 * 180.02562 * 13 12 11 15 15 C 1.34782 * 119.99611 * 18.94606 * 14 13 12 16 16 O 1.21355 * 119.99910 * 5.61274 * 15 14 13 17 17 C 1.49365 * 119.99836 * 185.60885 * 15 14 13 18 18 O 1.21355 * 120.00254 * 0.02562 * 17 15 14 19 19 N 1.34772 * 119.99894 * 179.97438 * 17 15 14 20 20 C 1.46506 * 120.00141 * 179.97438 * 19 17 15 21 21 C 1.52994 * 109.47213 * 180.02562 * 20 19 17 22 22 C 1.54633 * 111.04006 * 287.02215 * 21 20 19 23 23 C 1.51102 * 104.73104 * 217.33723 * 22 21 20 24 24 C 1.30524 * 111.10189 * 16.43605 * 23 22 21 25 25 C 1.51106 * 111.10341 * 0.02562 * 24 23 22 26 26 N 1.31964 * 120.84691 * 359.97438 * 13 12 11 27 27 H 0.96996 * 119.99461 * 174.83176 * 1 2 3 28 28 H 1.07991 * 120.43354 * 359.97438 * 10 9 7 29 29 H 1.08000 * 120.66642 * 180.23840 * 11 10 9 30 30 H 1.07999 * 120.25208 * 179.76629 * 12 11 10 31 31 H 0.96994 * 120.00688 * 198.94742 * 14 13 12 32 32 H 0.97000 * 120.00522 * 0.02562 * 19 17 15 33 33 H 1.08999 * 109.47086 * 300.00183 * 20 19 17 34 34 H 1.09003 * 109.46753 * 60.00297 * 20 19 17 35 35 H 1.08996 * 110.91739 * 51.03727 * 21 20 19 36 36 H 1.09004 * 110.38704 * 336.15208 * 22 21 20 37 37 H 1.09001 * 110.38682 * 98.52071 * 22 21 20 38 38 H 1.07993 * 124.44676 * 196.45746 * 23 22 21 39 39 H 1.07995 * 124.44873 * 180.02562 * 24 23 22 40 40 H 1.09004 * 110.38530 * 224.74889 * 25 24 23 41 41 H 1.08995 * 110.38496 * 102.37688 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0950 1.6966 1.2125 6 1 3.0952 1.6964 -1.2124 7 6 2.0077 -1.2127 0.0005 8 1 1.4681 -2.1477 -0.0305 9 6 3.4204 -1.2130 0.0416 10 6 4.1233 -2.4219 -0.1066 11 6 5.5058 -2.4059 -0.0691 12 6 6.1523 -1.1942 0.1247 13 6 5.3978 -0.0279 0.2706 14 7 6.0444 1.1885 0.4645 15 6 7.3455 1.3196 0.1381 16 8 7.9260 0.4106 -0.4181 17 6 8.0727 2.5836 0.4611 18 8 7.4923 3.4924 1.0177 19 7 9.3739 2.7145 0.1352 20 6 10.0871 3.9545 0.4514 21 6 11.5379 3.8433 -0.0216 22 6 12.3478 2.8929 0.8904 23 6 13.7166 3.5258 0.9858 24 6 13.6860 4.7721 0.5991 25 6 12.2917 5.1782 0.1819 26 7 4.0794 -0.0649 0.2260 27 1 -0.4849 -0.8366 -0.0757 28 1 3.5907 -3.3502 -0.2512 29 1 6.0706 -3.3192 -0.1841 30 1 7.2308 -1.1527 0.1620 31 1 5.5589 1.9423 0.8346 32 1 9.8381 1.9880 -0.3094 33 1 9.6037 4.7907 -0.0538 34 1 10.0675 4.1203 1.5286 35 1 11.5843 3.5220 -1.0621 36 1 11.8887 2.8306 1.8771 37 1 12.4179 1.9027 0.4402 38 1 14.6037 3.0141 1.3286 39 1 14.5446 5.4269 0.5798 40 1 12.3234 5.7419 -0.7505 41 1 11.8170 5.7672 0.9667 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890399879.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:25 Heat of formation + Delta-G solvation = -23.434528 kcal Electronic energy + Delta-G solvation = -25004.641191 eV Core-core repulsion = 21270.476408 eV Total energy + Delta-G solvation = -3734.164782 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91929 -39.62541 -38.84307 -37.93261 -35.41179 -34.47216 -33.53135 -31.21244 -30.67887 -29.72787 -28.59282 -26.44152 -25.39685 -24.09373 -21.94715 -21.50507 -20.89182 -19.90834 -19.17655 -18.79865 -18.18545 -17.09813 -16.59592 -16.41380 -15.97226 -15.84509 -15.27529 -15.06577 -14.41914 -14.34954 -13.90540 -13.66001 -13.30806 -13.14809 -13.06709 -12.71849 -12.54782 -12.27739 -12.12674 -12.00043 -11.73626 -11.66066 -11.57878 -11.34264 -10.95264 -10.76968 -10.42107 -10.11232 -9.68099 -9.46602 -9.32443 -9.29831 -9.19151 -8.64545 -7.86264 -7.51516 -7.29304 -4.84238 1.26126 1.85886 2.24649 2.47506 2.56559 3.28728 3.53511 3.59496 3.66195 3.97658 4.11795 4.15374 4.36473 4.37513 4.45791 4.59465 4.82940 4.85168 5.04695 5.25719 5.32699 5.33609 5.40750 5.45466 5.54394 5.58321 5.74402 5.80738 5.93994 6.00288 6.12699 6.31068 6.36210 6.43488 6.47085 6.84484 6.99524 7.09317 7.36006 7.41713 7.47675 7.64443 7.70602 8.00507 8.08305 8.27835 8.57564 9.31088 9.95933 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025963 B = 0.002777 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.199744 B =10081.079514 C =11031.866271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.043 3.957 3 Si 1.154 2.846 4 H -0.330 1.330 5 H -0.283 1.283 6 H -0.293 1.293 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.272 3.728 10 C -0.270 4.270 11 C -0.035 4.035 12 C -0.309 4.309 13 C 0.382 3.618 14 N -0.623 5.623 15 C 0.508 3.492 16 O -0.495 6.495 17 C 0.513 3.487 18 O -0.514 6.514 19 N -0.701 5.701 20 C 0.127 3.873 21 C -0.108 4.108 22 C -0.102 4.102 23 C -0.165 4.165 24 C -0.169 4.169 25 C -0.092 4.092 26 N -0.595 5.595 27 H 0.284 0.716 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.420 0.580 32 H 0.414 0.586 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.129 7.996 0.700 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.178 4.178 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.211 1.211 6 H -0.221 1.221 7 C -0.504 4.504 8 H 0.103 0.897 9 C 0.148 3.852 10 C -0.292 4.292 11 C -0.059 4.059 12 C -0.334 4.334 13 C 0.152 3.848 14 N -0.269 5.269 15 C 0.289 3.711 16 O -0.369 6.369 17 C 0.293 3.707 18 O -0.389 6.389 19 N -0.355 5.355 20 C 0.004 3.996 21 C -0.127 4.127 22 C -0.139 4.139 23 C -0.183 4.183 24 C -0.187 4.187 25 C -0.130 4.130 26 N -0.320 5.320 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.156 0.844 31 H 0.258 0.742 32 H 0.250 0.750 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 22.349 10.288 0.883 24.619 hybrid contribution 0.557 -2.663 -0.184 2.727 sum 22.906 7.625 0.699 24.152 Atomic orbital electron populations 1.70646 1.08149 1.32856 1.30699 1.27793 0.95336 1.06185 0.88525 0.81833 0.70725 0.69580 0.78938 1.26336 1.21070 1.22146 1.20752 0.90038 0.96371 1.43189 0.89688 1.18284 0.93501 0.85827 0.87586 1.21650 0.93894 0.98519 1.15176 1.20922 0.94103 0.96352 0.94489 1.21464 1.00749 0.91230 1.19994 1.18019 0.88928 0.83424 0.94428 1.42945 1.09904 1.14121 1.59967 1.19936 0.82754 0.88098 0.80341 1.90691 1.67119 1.40141 1.38990 1.20025 0.82960 0.87778 0.79945 1.90791 1.67018 1.40839 1.40229 1.45690 1.10055 1.19306 1.60485 1.21518 0.90458 0.86235 1.01371 1.22318 0.93010 0.96732 1.00620 1.21530 0.93159 0.99056 1.00116 1.23295 0.97954 0.96450 1.00553 1.23257 0.97659 0.96961 1.00847 1.21334 0.93060 0.96639 1.01952 1.65966 1.06520 1.29740 1.29806 0.90502 0.87443 0.87350 0.84412 0.74244 0.74972 0.90508 0.90560 0.89114 0.90146 0.90716 0.85861 0.85801 0.90663 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.78 13.65 55.55 0.76 -21.02 16 2 C 0.04 1.17 5.52 -17.34 -0.10 1.08 16 3 Si 1.15 28.54 25.53 -169.99 -4.34 24.20 16 4 H -0.33 -8.07 7.11 56.52 0.40 -7.67 16 5 H -0.28 -6.81 6.70 56.52 0.38 -6.44 16 6 H -0.29 -7.34 7.10 56.52 0.40 -6.94 16 7 C -0.47 -12.75 9.58 -37.73 -0.36 -13.11 16 8 H 0.09 2.27 8.05 -52.49 -0.42 1.85 16 9 C 0.27 7.09 6.39 -85.00 -0.54 6.55 16 10 C -0.27 -6.29 9.83 -38.65 -0.38 -6.67 16 11 C -0.03 -0.73 10.15 -39.38 -0.40 -1.13 16 12 C -0.31 -6.74 8.83 -38.88 -0.34 -7.09 16 13 C 0.38 8.78 7.50 -155.08 -1.16 7.62 16 14 N -0.62 -12.21 5.40 -11.84 -0.06 -12.27 16 15 C 0.51 8.60 7.73 -11.62 -0.09 8.51 16 16 O -0.50 -8.84 13.28 5.49 0.07 -8.76 16 17 C 0.51 7.26 7.89 -11.63 -0.09 7.17 16 18 O -0.51 -8.32 16.48 5.49 0.09 -8.23 16 19 N -0.70 -7.22 5.50 -60.76 -0.33 -7.56 16 20 C 0.13 1.04 4.99 -4.04 -0.02 1.02 16 21 C -0.11 -0.68 3.16 -88.90 -0.28 -0.97 16 22 C -0.10 -0.66 6.33 -26.83 -0.17 -0.83 16 23 C -0.16 -1.04 10.78 -35.70 -0.38 -1.43 16 24 C -0.17 -1.02 10.77 -35.69 -0.38 -1.41 16 25 C -0.09 -0.53 6.38 -26.82 -0.17 -0.70 16 26 N -0.59 -15.15 4.59 -10.28 -0.05 -15.20 16 27 H 0.28 7.34 8.72 -40.82 -0.36 6.98 16 28 H 0.11 2.32 8.06 -52.49 -0.42 1.89 16 29 H 0.11 1.92 8.06 -52.49 -0.42 1.49 16 30 H 0.14 2.84 5.34 -52.50 -0.28 2.56 16 31 H 0.42 7.90 8.31 -40.82 -0.34 7.56 16 32 H 0.41 3.75 7.94 -40.82 -0.32 3.42 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.65 7.92 -51.93 -0.41 0.24 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.56 7.74 -51.93 -0.40 0.16 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.45 7.89 -51.93 -0.41 0.04 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -30.44 347.86 -8.65 -39.09 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.15 Total: 5.92 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -4.88 Total: -1.40 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.31 Total: -56.05 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.16 Total: -16.99 kcal Atomic # 14 Polarization: 28.54 SS G_CDS: -4.34 Total: 24.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.44 -8.65 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890399879.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.654 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds