Wall clock time and date at job start Tue Mar 31 2020 10:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48495 * 109.47162 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47360 * 120.00310 * 3 2 1 6 6 H 1.48509 * 109.46705 * 239.99785 * 3 2 1 7 7 C 1.40036 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99280 * 4.82850 * 7 2 1 9 9 C 1.41329 * 120.00273 * 184.83075 * 7 2 1 10 10 C 1.40625 * 119.78999 * 185.11712 * 9 7 2 11 11 C 1.38305 * 119.14203 * 179.97438 * 10 9 7 12 12 C 1.38696 * 118.66741 * 359.97438 * 11 10 9 13 13 C 1.39666 * 119.49232 * 0.02562 * 12 11 10 14 14 N 1.39126 * 119.57596 * 179.97438 * 13 12 11 15 15 C 1.34770 * 119.99935 * 18.89842 * 14 13 12 16 16 O 1.21353 * 120.00191 * 5.97083 * 15 14 13 17 17 C 1.49366 * 119.99735 * 185.98149 * 15 14 13 18 18 O 1.21360 * 120.00220 * 33.82830 * 17 15 14 19 19 N 1.34777 * 120.00056 * 213.82713 * 17 15 14 20 20 C 1.46494 * 120.00405 * 199.16729 * 19 17 15 21 21 C 1.53006 * 117.49852 * 15.04346 * 20 19 17 22 22 C 1.52999 * 60.00108 * 252.51255 * 21 20 19 23 23 C 1.46502 * 119.99835 * 19.16181 * 19 17 15 24 24 C 1.53004 * 117.49764 * 1.09705 * 23 19 17 25 25 C 1.52999 * 117.50295 * 292.47509 * 23 19 17 26 26 N 1.31960 * 120.84969 * 359.71992 * 13 12 11 27 27 H 0.97001 * 120.00061 * 174.99103 * 1 2 3 28 28 H 1.08003 * 120.42958 * 359.97126 * 10 9 7 29 29 H 1.07993 * 120.66981 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.25656 * 180.02562 * 12 11 10 31 31 H 0.97003 * 119.99767 * 198.89442 * 14 13 12 32 32 H 1.09005 * 115.55527 * 160.75490 * 20 19 17 33 33 H 1.09002 * 117.49713 * 0.02562 * 21 20 19 34 34 H 1.09005 * 117.49710 * 145.02233 * 21 20 19 35 35 H 1.08995 * 117.49878 * 252.51024 * 22 21 20 36 36 H 1.08999 * 117.49928 * 107.48909 * 22 21 20 37 37 H 1.09003 * 115.55144 * 146.80082 * 23 19 17 38 38 H 1.09001 * 117.49969 * 359.97438 * 24 23 19 39 39 H 1.09000 * 117.49815 * 145.01779 * 24 23 19 40 40 H 1.08995 * 117.50445 * 214.98378 * 25 23 19 41 41 H 1.09003 * 117.49749 * 359.97438 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7464 -0.0006 5 1 3.0952 1.6965 1.2124 6 1 3.0952 1.6963 -1.2126 7 6 2.0076 -1.2127 0.0005 8 1 1.4704 -2.1463 -0.0778 9 6 3.4171 -1.2149 0.1036 10 6 4.1237 -2.4259 -0.0045 11 6 5.5029 -2.4125 0.0978 12 6 6.1430 -1.1994 0.3039 13 6 5.3854 -0.0303 0.4028 14 7 6.0256 1.1874 0.6101 15 6 7.3401 1.3121 0.3401 16 8 7.9412 0.3978 -0.1846 17 6 8.0570 2.5757 0.6868 18 8 7.7360 3.2043 1.6741 19 7 9.0605 3.0180 -0.0967 20 6 10.0282 3.9845 0.4281 21 6 10.0718 4.1888 1.9438 22 6 9.4774 5.2730 1.0426 23 6 9.1837 2.5319 -1.4732 24 6 8.1273 1.5430 -1.9704 25 6 9.5479 1.0593 -1.6726 26 7 4.0705 -0.0651 0.2973 27 1 -0.4850 -0.8368 -0.0733 28 1 3.5962 -3.3545 -0.1654 29 1 6.0702 -3.3279 0.0181 30 1 7.2190 -1.1592 0.3873 31 1 5.5258 1.9466 0.9489 32 1 10.9705 4.0493 -0.1161 33 1 9.3807 3.6036 2.5505 34 1 11.0429 4.3877 2.3971 35 1 10.0575 6.1851 0.9030 36 1 8.3951 5.4014 1.0564 37 1 9.5791 3.2499 -2.1918 38 1 7.3409 1.2538 -1.2732 39 1 7.8275 1.6104 -3.0162 40 1 10.1828 0.8084 -2.5223 41 1 9.6964 0.4522 -0.7796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890403201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:20 Heat of formation + Delta-G solvation = 114.240703 kcal Electronic energy + Delta-G solvation = -26745.468405 eV Core-core repulsion = 23017.273669 eV Total energy + Delta-G solvation = -3728.194736 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12465 -39.76900 -38.59287 -37.38240 -36.13001 -34.70920 -33.59377 -32.22525 -31.23791 -29.80090 -26.29220 -25.27132 -23.31938 -22.68104 -22.46226 -22.34468 -21.93673 -20.88895 -19.45630 -18.59206 -18.27594 -17.14136 -16.88639 -16.23357 -15.92056 -15.38630 -15.22736 -14.99661 -14.47394 -14.24057 -13.91601 -13.75882 -13.45823 -13.23404 -12.89905 -12.69365 -12.30838 -12.12321 -11.98289 -11.48502 -11.34066 -11.20957 -10.88468 -10.66230 -10.55277 -10.51961 -10.37914 -10.34953 -9.73553 -9.50573 -9.22642 -9.09318 -8.66217 -8.53393 -7.89334 -7.51558 -7.32402 -4.87159 1.20309 2.07454 2.33512 2.53994 2.99330 3.17130 3.51780 3.59325 3.61458 3.88319 3.92712 4.20648 4.33168 4.55259 4.57476 4.72767 4.78016 4.80743 4.96467 5.04835 5.23032 5.42673 5.53859 5.63942 5.70889 5.74128 5.85254 5.87313 6.08923 6.12591 6.26070 6.27620 6.38293 6.40862 6.46941 6.81650 6.94295 7.00229 7.28387 7.37075 7.44894 7.59270 7.61317 7.90472 8.02617 8.23897 8.54473 9.27701 9.92636 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.004414 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.475664 B = 6342.406787 C = 7158.513460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.044 3.956 3 Si 1.152 2.848 4 H -0.330 1.330 5 H -0.281 1.281 6 H -0.293 1.293 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.272 3.728 10 C -0.269 4.269 11 C -0.033 4.033 12 C -0.309 4.309 13 C 0.380 3.620 14 N -0.623 5.623 15 C 0.492 3.508 16 O -0.459 6.459 17 C 0.517 3.483 18 O -0.499 6.499 19 N -0.539 5.539 20 C 0.073 3.927 21 C -0.187 4.187 22 C -0.182 4.182 23 C 0.051 3.949 24 C -0.227 4.227 25 C -0.161 4.161 26 N -0.594 5.594 27 H 0.284 0.716 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.417 0.583 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.196 6.975 -1.601 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.178 4.178 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.209 1.209 6 H -0.221 1.221 7 C -0.504 4.504 8 H 0.103 0.897 9 C 0.149 3.851 10 C -0.292 4.292 11 C -0.058 4.058 12 C -0.334 4.334 13 C 0.150 3.850 14 N -0.270 5.270 15 C 0.276 3.724 16 O -0.335 6.335 17 C 0.300 3.700 18 O -0.374 6.374 19 N -0.269 5.269 20 C -0.030 4.030 21 C -0.224 4.224 22 C -0.221 4.221 23 C -0.052 4.052 24 C -0.264 4.264 25 C -0.200 4.200 26 N -0.320 5.320 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.156 0.844 31 H 0.254 0.746 32 H 0.154 0.846 33 H 0.139 0.861 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.685 8.947 -1.307 19.863 hybrid contribution 0.298 -2.334 -0.201 2.362 sum 17.983 6.613 -1.508 19.220 Atomic orbital electron populations 1.70643 1.08182 1.32921 1.30513 1.27779 0.95313 1.06159 0.88539 0.81875 0.70823 0.69672 0.78865 1.26310 1.20915 1.22118 1.20769 0.90335 0.96444 1.42816 0.89678 1.18263 0.93429 0.85819 0.87630 1.21651 0.93963 0.98453 1.15102 1.20912 0.94094 0.96372 0.94378 1.21467 1.00848 0.91108 1.19991 1.18021 0.89070 0.83312 0.94578 1.43094 1.08563 1.13870 1.61460 1.19604 0.82850 0.90167 0.79800 1.90843 1.65341 1.41207 1.36149 1.20005 0.81091 0.84952 0.83927 1.90725 1.63558 1.55159 1.27957 1.46487 1.26631 1.42108 1.11705 1.21751 0.93147 0.92258 0.95891 1.23555 1.03312 1.02932 0.92604 1.23358 1.02397 0.92626 1.03704 1.21882 1.08096 0.92843 0.82421 1.25390 0.96618 1.00454 1.03890 1.23770 0.97033 0.95034 1.04118 1.66010 1.06786 1.29695 1.29511 0.90450 0.87476 0.87370 0.84403 0.74552 0.84640 0.86097 0.88410 0.88368 0.87860 0.85104 0.83173 0.89315 0.89382 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.51 13.65 55.55 0.76 -20.75 16 2 C 0.04 1.17 5.52 -17.34 -0.10 1.08 16 3 Si 1.15 27.85 25.61 -169.99 -4.35 23.50 16 4 H -0.33 -7.91 7.11 56.52 0.40 -7.51 16 5 H -0.28 -6.62 6.61 56.52 0.37 -6.25 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.47 -12.57 9.57 -37.73 -0.36 -12.93 16 8 H 0.09 2.25 8.05 -52.49 -0.42 1.83 16 9 C 0.27 6.95 6.40 -85.00 -0.54 6.41 16 10 C -0.27 -6.15 9.83 -38.66 -0.38 -6.53 16 11 C -0.03 -0.69 10.15 -39.39 -0.40 -1.09 16 12 C -0.31 -6.51 8.83 -38.88 -0.34 -6.85 16 13 C 0.38 8.42 7.50 -155.07 -1.16 7.26 16 14 N -0.62 -11.78 5.37 -34.07 -0.18 -11.96 16 15 C 0.49 8.22 4.78 -11.63 -0.06 8.16 16 16 O -0.46 -7.76 6.86 5.49 0.04 -7.73 16 17 C 0.52 7.76 7.11 -11.62 -0.08 7.68 16 18 O -0.50 -8.06 12.88 5.49 0.07 -7.99 16 19 N -0.54 -6.65 3.17 -159.11 -0.50 -7.15 16 20 C 0.07 0.72 6.65 -67.93 -0.45 0.27 16 21 C -0.19 -1.92 9.61 -26.73 -0.26 -2.18 16 22 C -0.18 -1.79 9.87 -26.73 -0.26 -2.05 16 23 C 0.05 0.57 6.59 -67.93 -0.45 0.13 16 24 C -0.23 -3.12 8.86 -26.73 -0.24 -3.36 16 25 C -0.16 -1.93 9.39 -26.73 -0.25 -2.18 16 26 N -0.59 -14.71 4.54 -10.28 -0.05 -14.76 16 27 H 0.28 7.27 8.72 -40.82 -0.36 6.91 16 28 H 0.11 2.28 8.06 -52.48 -0.42 1.85 16 29 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.14 2.74 5.34 -52.41 -0.28 2.46 16 31 H 0.42 7.56 8.71 -40.82 -0.36 7.20 16 32 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.12 1.58 5.63 -51.93 -0.29 1.29 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.24 7.30 -51.93 -0.38 0.86 16 37 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.15 2.51 2.92 -103.28 -0.30 2.21 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.12 1.68 6.15 -51.93 -0.32 1.36 16 LS Contribution 331.35 15.07 4.99 4.99 Total: -1.00 -28.50 331.35 -9.47 -37.97 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -4.91 Total: 10.08 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -5.33 Total: -6.20 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.02 Total: -54.62 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.11 Total: -15.71 kcal Atomic # 14 Polarization: 27.85 SS G_CDS: -4.35 Total: 23.50 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.50 -9.47 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890403201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.212 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds