Wall clock time and date at job start Tue Mar 31 2020 10:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48495 * 109.47162 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47360 * 120.00310 * 3 2 1 6 6 H 1.48509 * 109.46705 * 239.99785 * 3 2 1 7 7 C 1.40036 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99280 * 4.82850 * 7 2 1 9 9 C 1.41329 * 120.00273 * 184.83075 * 7 2 1 10 10 C 1.40625 * 119.78999 * 185.11712 * 9 7 2 11 11 C 1.38305 * 119.14203 * 179.97438 * 10 9 7 12 12 C 1.38696 * 118.66741 * 359.97438 * 11 10 9 13 13 C 1.39666 * 119.49232 * 0.02562 * 12 11 10 14 14 N 1.39126 * 119.57596 * 179.97438 * 13 12 11 15 15 C 1.34770 * 119.99935 * 18.89842 * 14 13 12 16 16 O 1.21353 * 120.00191 * 5.97083 * 15 14 13 17 17 C 1.49366 * 119.99735 * 185.98149 * 15 14 13 18 18 O 1.21360 * 120.00220 * 33.82830 * 17 15 14 19 19 N 1.34777 * 120.00056 * 213.82713 * 17 15 14 20 20 C 1.46494 * 120.00405 * 199.16729 * 19 17 15 21 21 C 1.53006 * 117.49852 * 15.04346 * 20 19 17 22 22 C 1.52999 * 60.00108 * 252.51255 * 21 20 19 23 23 C 1.46502 * 119.99835 * 19.16181 * 19 17 15 24 24 C 1.53004 * 117.49764 * 1.09705 * 23 19 17 25 25 C 1.52999 * 117.50295 * 292.47509 * 23 19 17 26 26 N 1.31960 * 120.84969 * 359.71992 * 13 12 11 27 27 H 0.97001 * 120.00061 * 174.99103 * 1 2 3 28 28 H 1.08003 * 120.42958 * 359.97126 * 10 9 7 29 29 H 1.07993 * 120.66981 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.25656 * 180.02562 * 12 11 10 31 31 H 0.97003 * 119.99767 * 198.89442 * 14 13 12 32 32 H 1.09005 * 115.55527 * 160.75490 * 20 19 17 33 33 H 1.09002 * 117.49713 * 0.02562 * 21 20 19 34 34 H 1.09005 * 117.49710 * 145.02233 * 21 20 19 35 35 H 1.08995 * 117.49878 * 252.51024 * 22 21 20 36 36 H 1.08999 * 117.49928 * 107.48909 * 22 21 20 37 37 H 1.09003 * 115.55144 * 146.80082 * 23 19 17 38 38 H 1.09001 * 117.49969 * 359.97438 * 24 23 19 39 39 H 1.09000 * 117.49815 * 145.01779 * 24 23 19 40 40 H 1.08995 * 117.50445 * 214.98378 * 25 23 19 41 41 H 1.09003 * 117.49749 * 359.97438 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7464 -0.0006 5 1 3.0952 1.6965 1.2124 6 1 3.0952 1.6963 -1.2126 7 6 2.0076 -1.2127 0.0005 8 1 1.4704 -2.1463 -0.0778 9 6 3.4171 -1.2149 0.1036 10 6 4.1237 -2.4259 -0.0045 11 6 5.5029 -2.4125 0.0978 12 6 6.1430 -1.1994 0.3039 13 6 5.3854 -0.0303 0.4028 14 7 6.0256 1.1874 0.6101 15 6 7.3401 1.3121 0.3401 16 8 7.9412 0.3978 -0.1846 17 6 8.0570 2.5757 0.6868 18 8 7.7360 3.2043 1.6741 19 7 9.0605 3.0180 -0.0967 20 6 10.0282 3.9845 0.4281 21 6 10.0718 4.1888 1.9438 22 6 9.4774 5.2730 1.0426 23 6 9.1837 2.5319 -1.4732 24 6 8.1273 1.5430 -1.9704 25 6 9.5479 1.0593 -1.6726 26 7 4.0705 -0.0651 0.2973 27 1 -0.4850 -0.8368 -0.0733 28 1 3.5962 -3.3545 -0.1654 29 1 6.0702 -3.3279 0.0181 30 1 7.2190 -1.1592 0.3873 31 1 5.5258 1.9466 0.9489 32 1 10.9705 4.0493 -0.1161 33 1 9.3807 3.6036 2.5505 34 1 11.0429 4.3877 2.3971 35 1 10.0575 6.1851 0.9030 36 1 8.3951 5.4014 1.0564 37 1 9.5791 3.2499 -2.1918 38 1 7.3409 1.2538 -1.2732 39 1 7.8275 1.6104 -3.0162 40 1 10.1828 0.8084 -2.5223 41 1 9.6964 0.4522 -0.7796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890403201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:19 Heat of formation + Delta-G solvation = 97.408252 kcal Electronic energy + Delta-G solvation = -26746.198315 eV Core-core repulsion = 23017.273669 eV Total energy + Delta-G solvation = -3728.924646 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.37500 -41.10139 -40.11887 -38.53777 -37.11034 -36.24798 -35.42464 -33.22329 -33.05550 -31.55809 -27.80612 -26.89427 -24.57530 -23.80765 -23.56094 -23.37036 -23.18258 -22.36661 -20.93843 -20.16981 -19.64405 -18.62313 -18.14081 -17.43337 -17.11480 -17.00800 -16.38803 -16.25673 -15.94833 -15.61981 -15.42543 -15.05719 -14.88564 -14.64966 -14.30250 -14.26623 -13.83812 -13.70077 -13.09127 -12.96634 -12.82935 -12.35712 -12.32507 -12.16245 -11.94530 -11.68034 -11.56923 -11.39004 -11.31959 -11.25036 -10.66381 -10.53617 -10.38285 -9.80152 -9.49499 -9.31790 -9.24627 -6.85824 -0.11445 0.65746 0.77172 0.90128 1.53480 1.59357 1.70088 1.94905 2.05126 2.38620 2.61727 2.71919 2.89846 3.04110 3.51286 3.74722 3.84763 3.97663 4.00046 4.03667 4.09164 4.11516 4.26297 4.41124 4.55488 4.62126 4.65700 4.83193 4.85157 4.87963 5.01374 5.09460 5.21855 5.29987 5.30719 5.35391 5.38576 5.49069 5.61245 5.65511 5.84184 5.85789 6.07253 6.31216 6.43109 6.57519 6.64192 7.42479 7.92474 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.004414 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.475664 B = 6342.406787 C = 7158.513460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.019 3.981 3 Si 1.182 2.818 4 H -0.329 1.329 5 H -0.277 1.277 6 H -0.297 1.297 7 C -0.506 4.506 8 H 0.073 0.927 9 C 0.259 3.741 10 C -0.283 4.283 11 C -0.023 4.023 12 C -0.298 4.298 13 C 0.371 3.629 14 N -0.631 5.631 15 C 0.495 3.505 16 O -0.459 6.459 17 C 0.516 3.484 18 O -0.516 6.516 19 N -0.533 5.533 20 C 0.071 3.929 21 C -0.194 4.194 22 C -0.179 4.179 23 C 0.068 3.932 24 C -0.256 4.256 25 C -0.152 4.152 26 N -0.612 5.612 27 H 0.283 0.717 28 H 0.119 0.881 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.418 0.582 32 H 0.176 0.824 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.075 0.925 37 H 0.170 0.830 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.434 7.884 -2.377 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.199 4.199 3 Si 1.015 2.985 4 H -0.263 1.263 5 H -0.205 1.205 6 H -0.226 1.226 7 C -0.538 4.538 8 H 0.091 0.909 9 C 0.133 3.867 10 C -0.305 4.305 11 C -0.047 4.047 12 C -0.322 4.322 13 C 0.141 3.859 14 N -0.278 5.278 15 C 0.279 3.721 16 O -0.334 6.334 17 C 0.298 3.702 18 O -0.393 6.393 19 N -0.263 5.263 20 C -0.031 4.031 21 C -0.232 4.232 22 C -0.217 4.217 23 C -0.035 4.035 24 C -0.292 4.292 25 C -0.190 4.190 26 N -0.338 5.338 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.168 0.832 30 H 0.172 0.828 31 H 0.255 0.745 32 H 0.193 0.807 33 H 0.107 0.893 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.187 0.813 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.132 0.868 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 21.978 9.863 -2.089 24.180 hybrid contribution -0.723 -2.668 0.027 2.764 sum 21.254 7.196 -2.062 22.534 Atomic orbital electron populations 1.70656 1.08446 1.32877 1.33102 1.28382 0.95576 1.07670 0.88228 0.81473 0.70101 0.68212 0.78690 1.26274 1.20528 1.22583 1.20754 0.91298 0.96053 1.45745 0.90880 1.18450 0.93374 0.87196 0.87631 1.21828 0.95104 0.98022 1.15551 1.21354 0.93383 0.97843 0.92154 1.21842 1.01628 0.90932 1.17821 1.18342 0.88536 0.85028 0.94038 1.43138 1.09434 1.12947 1.62270 1.19987 0.81988 0.91104 0.78981 1.90832 1.65208 1.41685 1.35669 1.19709 0.81846 0.84427 0.84185 1.90742 1.64296 1.55416 1.28830 1.46672 1.25974 1.41800 1.11816 1.22242 0.93645 0.91286 0.95930 1.23535 1.03949 1.02982 0.92696 1.23367 1.01222 0.93772 1.03363 1.22200 1.05797 0.93383 0.82127 1.25195 0.96813 1.03579 1.03660 1.23724 0.95797 0.95234 1.04227 1.65926 1.08206 1.29786 1.29926 0.90610 0.86340 0.83236 0.82836 0.74460 0.80662 0.89306 0.85712 0.85352 0.90621 0.81257 0.86374 0.88615 0.86750 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.16 13.65 21.84 0.30 -45.86 16 2 C 0.02 1.04 5.52 85.29 0.47 1.51 16 3 Si 1.18 58.08 25.61 68.60 1.76 59.83 16 4 H -0.33 -15.90 7.11 99.48 0.71 -15.19 16 5 H -0.28 -13.25 6.61 99.48 0.66 -12.60 16 6 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 7 C -0.51 -27.97 9.57 23.47 0.22 -27.75 16 8 H 0.07 4.07 8.05 -2.91 -0.02 4.04 16 9 C 0.26 13.38 6.40 40.21 0.26 13.64 16 10 C -0.28 -12.74 9.83 22.87 0.22 -12.51 16 11 C -0.02 -0.91 10.15 22.40 0.23 -0.68 16 12 C -0.30 -12.00 8.83 22.72 0.20 -11.80 16 13 C 0.37 16.24 7.50 133.28 1.00 17.24 16 14 N -0.63 -23.74 5.37 -380.06 -2.04 -25.79 16 15 C 0.49 16.10 4.78 87.24 0.42 16.51 16 16 O -0.46 -14.81 6.86 -3.26 -0.02 -14.83 16 17 C 0.52 14.89 7.11 87.24 0.62 15.51 16 18 O -0.52 -16.54 12.88 -3.28 -0.04 -16.58 16 19 N -0.53 -11.63 3.17 -775.66 -2.46 -14.09 16 20 C 0.07 1.13 6.65 45.00 0.30 1.43 16 21 C -0.19 -3.50 9.61 30.60 0.29 -3.21 16 22 C -0.18 -3.00 9.87 30.60 0.30 -2.70 16 23 C 0.07 1.26 6.59 44.99 0.30 1.56 16 24 C -0.26 -6.46 8.86 30.60 0.27 -6.19 16 25 C -0.15 -3.10 9.39 30.59 0.29 -2.82 16 26 N -0.61 -30.54 4.54 -186.43 -0.85 -31.38 16 27 H 0.28 15.18 8.72 -92.71 -0.81 14.37 16 28 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 29 H 0.15 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.15 5.73 5.34 -2.93 -0.02 5.71 16 31 H 0.42 15.35 8.71 -92.71 -0.81 14.55 16 32 H 0.18 1.45 8.14 -2.38 -0.02 1.44 16 33 H 0.09 2.25 5.63 -2.39 -0.01 2.24 16 34 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.73 7.30 -2.39 -0.02 1.71 16 37 H 0.17 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.12 3.81 2.92 -145.59 -0.42 3.39 16 39 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.10 2.57 6.15 -2.39 -0.01 2.56 16 Total: -1.00 -64.13 331.35 1.82 -62.31 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.22 Total: 26.64 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.39 Total: -0.25 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -5.05 Total: -117.12 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.06 Total: -31.41 kcal Atomic # 14 Polarization: 58.08 SS G_CDS: 1.76 Total: 59.83 kcal Total: -64.13 1.82 -62.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890403201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.720 kcal (2) G-P(sol) polarization free energy of solvation -64.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds