Wall clock time and date at job start Tue Mar 31 2020 10:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86804 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47535 * 239.99718 * 3 2 1 5 5 H 1.48502 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47019 * 119.99524 * 3 2 1 7 7 C 1.40027 * 120.00630 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00181 * 180.02562 * 7 2 1 9 9 C 1.41336 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.40631 * 119.78737 * 179.97438 * 9 7 2 11 11 C 1.38306 * 119.13675 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.67121 * 359.74962 * 11 10 9 13 13 C 1.39673 * 119.49101 * 0.51939 * 12 11 10 14 14 N 1.39120 * 119.57607 * 179.74633 * 13 12 11 15 15 C 1.34768 * 119.99748 * 185.38515 * 14 13 12 16 16 O 1.21358 * 120.00549 * 354.85283 * 15 14 13 17 17 C 1.49370 * 119.99869 * 174.85939 * 15 14 13 18 18 O 1.21358 * 120.00034 * 359.97438 * 17 15 14 19 19 N 1.34781 * 120.00043 * 180.02562 * 17 15 14 20 20 C 1.46499 * 119.99952 * 179.97438 * 19 17 15 21 21 H 1.08999 * 115.57913 * 350.76370 * 20 19 17 22 22 C 1.53117 * 117.51529 * 136.53611 * 20 19 17 23 23 C 1.52460 * 117.51265 * 205.00282 * 20 19 17 24 24 C 1.53253 * 128.58837 * 134.94810 * 23 20 19 25 25 C 1.53885 * 86.88654 * 245.05360 * 24 23 20 26 26 C 1.53255 * 128.58668 * 10.14638 * 23 20 19 27 27 N 1.31958 * 120.84262 * 359.46858 * 13 12 11 28 28 H 0.96997 * 120.00729 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.43407 * 359.97438 * 10 9 7 30 30 H 1.08001 * 120.66208 * 179.97438 * 11 10 9 31 31 H 1.08000 * 120.25406 * 180.26024 * 12 11 10 32 32 H 0.97005 * 119.99844 * 5.38911 * 14 13 12 33 33 H 0.96997 * 119.99635 * 359.97438 * 19 17 15 34 34 H 1.09002 * 117.51187 * 359.97438 * 22 20 19 35 35 H 1.09002 * 117.54921 * 214.87933 * 22 20 19 36 36 H 1.09000 * 113.64615 * 359.55573 * 24 23 20 37 37 H 1.09005 * 113.64950 * 130.55323 * 24 23 20 38 38 H 1.08998 * 113.59251 * 89.60417 * 25 24 23 39 39 H 1.08998 * 113.59129 * 220.42715 * 25 24 23 40 40 H 1.09001 * 113.64801 * 229.45234 * 26 23 20 41 41 H 1.09004 * 113.64703 * 0.45067 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6966 -1.2124 5 1 1.2762 2.7465 -0.0006 6 1 3.0950 1.6965 1.2126 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0010 9 6 1.3010 -2.4366 0.0005 10 6 2.0087 -3.6519 0.0005 11 6 1.3037 -4.8417 0.0011 12 6 -0.0824 -4.7939 0.0069 13 6 -0.7277 -3.5552 0.0011 14 7 -2.1180 -3.5052 0.0015 15 6 -2.7496 -2.3203 -0.1136 16 8 -2.1091 -1.2896 -0.1237 17 6 -4.2382 -2.2756 -0.2287 18 8 -4.8788 -3.3063 -0.2189 19 7 -4.8699 -1.0906 -0.3443 20 6 -6.3299 -1.0468 -0.4578 21 1 -6.8200 -2.0102 -0.5985 22 6 -7.0718 0.0110 0.3638 23 6 -6.9466 0.1646 -1.1479 24 6 -8.0600 0.2012 -2.2004 25 6 -7.0056 0.7547 -3.1749 26 6 -6.2454 1.2726 -1.9412 27 7 -0.0354 -2.4318 0.0006 28 1 -0.4851 0.8400 -0.0004 29 1 3.0887 -3.6560 0.0001 30 1 1.8222 -5.7892 0.0007 31 1 -0.6584 -5.7075 0.0117 32 1 -2.6327 -4.3232 0.0848 33 1 -4.3579 -0.2669 -0.3525 34 1 -6.4735 0.6739 0.9889 35 1 -8.0501 -0.2559 0.7635 36 1 -8.4344 -0.7849 -2.4752 37 1 -8.8565 0.9088 -1.9699 38 1 -6.4699 -0.0196 -3.7240 39 1 -7.3820 1.5484 -3.8202 40 1 -6.5366 2.2784 -1.6386 41 1 -5.1648 1.1455 -2.0083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890442011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:36 Heat of formation + Delta-G solvation = 42.240754 kcal Electronic energy + Delta-G solvation = -25681.561949 eV Core-core repulsion = 21950.245061 eV Total energy + Delta-G solvation = -3731.316888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.46723 -39.53682 -38.41983 -37.19761 -35.12443 -34.20973 -33.10912 -31.91603 -30.39385 -29.22795 -25.97636 -25.83629 -24.88524 -23.00622 -22.34419 -21.51043 -20.95879 -19.72199 -18.82229 -18.11491 -17.11461 -16.70106 -16.01502 -15.59109 -15.41848 -15.27600 -14.83369 -14.69275 -14.48928 -13.78664 -13.67689 -13.39921 -13.08463 -12.86070 -12.64514 -12.30175 -12.06004 -12.02174 -11.79532 -11.75927 -11.19247 -11.07375 -11.01935 -10.83721 -10.71660 -10.52912 -10.47670 -10.00984 -9.92883 -9.81194 -9.10473 -9.03138 -8.83747 -8.04770 -7.34981 -7.07614 -6.23243 -4.46616 1.84385 2.64616 2.80654 3.06491 3.11711 3.14279 3.22976 3.55670 3.93595 3.98306 4.00791 4.29182 4.41787 4.54967 4.62845 4.71001 4.85535 4.93842 5.17042 5.44751 5.49083 5.51389 5.57885 5.70546 5.74058 5.85534 5.95557 6.05422 6.08632 6.15581 6.35537 6.42711 6.56302 6.73700 6.78333 7.13947 7.24968 7.47653 7.51236 7.75060 7.87218 8.02089 8.14557 8.34893 8.60943 8.91257 8.99876 10.13137 10.40161 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.003969 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.941746 B = 7052.985855 C = 8762.332928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.663 5.663 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.424 4.424 8 H 0.083 0.917 9 C 0.271 3.729 10 C -0.300 4.300 11 C -0.036 4.036 12 C -0.348 4.348 13 C 0.368 3.632 14 N -0.638 5.638 15 C 0.468 3.532 16 O -0.386 6.386 17 C 0.514 3.486 18 O -0.532 6.532 19 N -0.676 5.676 20 C 0.112 3.888 21 H 0.140 0.860 22 C -0.175 4.175 23 C -0.169 4.169 24 C -0.097 4.097 25 C -0.136 4.136 26 C -0.103 4.103 27 N -0.475 5.475 28 H 0.272 0.728 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.412 0.588 33 H 0.415 0.585 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 2.849 -2.277 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.282 5.282 2 C -0.169 4.169 3 Si 0.723 3.277 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.101 0.899 9 C 0.146 3.854 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.374 4.374 13 C 0.130 3.870 14 N -0.286 5.286 15 C 0.244 3.756 16 O -0.249 6.249 17 C 0.296 3.704 18 O -0.408 6.408 19 N -0.328 5.328 20 C 0.006 3.994 21 H 0.157 0.843 22 C -0.213 4.213 23 C -0.170 4.170 24 C -0.134 4.134 25 C -0.174 4.174 26 C -0.140 4.140 27 N -0.194 5.194 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.247 0.753 33 H 0.252 0.748 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.715 3.894 -2.300 15.394 hybrid contribution 0.723 -0.193 0.115 0.757 sum -13.993 3.701 -2.184 14.638 Atomic orbital electron populations 1.70287 1.05945 1.27475 1.24516 1.26154 0.95118 1.00649 0.94949 0.86546 0.80208 0.81257 0.79737 1.19133 1.20380 1.19123 1.19560 0.94120 0.89324 1.42453 0.89868 1.18358 0.86962 0.92047 0.87993 1.21657 0.98683 0.93466 1.18518 1.20587 0.93070 0.96682 0.95686 1.20514 0.94833 0.94937 1.27145 1.18535 0.82598 0.91247 0.94601 1.42980 1.05309 1.09163 1.71185 1.20051 0.87010 0.86141 0.82410 1.91215 1.64532 1.30681 1.38441 1.20852 0.89721 0.83612 0.76226 1.90688 1.68208 1.33110 1.48825 1.45078 1.06003 1.09483 1.72236 1.21498 0.80327 0.95267 1.02327 0.84283 1.23413 1.02218 1.02443 0.93244 1.22836 1.00984 0.99676 0.93527 1.22444 0.95388 1.01457 0.94110 1.22734 0.97816 1.00757 0.96078 1.22437 0.99876 0.96867 0.94825 1.68635 1.07298 1.23163 1.20330 0.91623 0.88361 0.88340 0.88700 0.75277 0.74774 0.88107 0.87804 0.91268 0.89583 0.89992 0.91280 0.89553 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.55 8.99 55.55 0.50 -17.05 16 2 C 0.06 1.53 5.50 -17.35 -0.10 1.43 16 3 Si 0.90 18.64 29.56 -169.99 -5.02 13.61 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 7 C -0.42 -11.36 9.14 -37.73 -0.34 -11.71 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.27 7.48 6.55 -85.00 -0.56 6.92 16 10 C -0.30 -7.42 9.83 -38.65 -0.38 -7.80 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.35 -7.84 9.96 -38.88 -0.39 -8.23 16 13 C 0.37 8.99 7.42 -155.08 -1.15 7.84 16 14 N -0.64 -13.27 5.37 -11.84 -0.06 -13.33 16 15 C 0.47 9.65 7.84 -11.63 -0.09 9.55 16 16 O -0.39 -9.14 12.24 5.49 0.07 -9.07 16 17 C 0.51 8.87 7.89 -11.62 -0.09 8.78 16 18 O -0.53 -9.68 16.05 5.49 0.09 -9.59 16 19 N -0.68 -9.65 5.54 -54.47 -0.30 -9.95 16 20 C 0.11 1.32 6.43 -68.15 -0.44 0.88 16 21 H 0.14 1.72 7.40 -51.93 -0.38 1.33 16 22 C -0.17 -1.68 10.46 -26.94 -0.28 -1.96 16 23 C -0.17 -1.65 3.01 -154.80 -0.47 -2.11 16 24 C -0.10 -0.79 8.10 -26.14 -0.21 -1.01 16 25 C -0.14 -1.19 8.08 -25.81 -0.21 -1.40 16 26 C -0.10 -0.98 8.08 -26.14 -0.21 -1.19 16 27 N -0.48 -13.08 5.74 -10.28 -0.06 -13.14 16 28 H 0.27 6.67 8.29 -40.82 -0.34 6.33 16 29 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.41 7.33 8.18 -40.82 -0.33 7.00 16 33 H 0.42 5.84 8.00 -40.82 -0.33 5.51 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -30.85 351.97 -10.03 -40.88 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -5.23 Total: 13.54 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -5.32 Total: -1.19 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.08 Total: -53.48 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.16 Total: -18.66 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.85 -10.03 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890442011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.117 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds