Wall clock time and date at job start Tue Mar 31 2020 10:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86808 * 119.99920 * 2 1 4 4 H 1.48496 * 109.46891 * 274.99610 * 3 2 1 5 5 H 1.48496 * 109.46840 * 34.99697 * 3 2 1 6 6 H 1.48502 * 109.46827 * 154.99811 * 3 2 1 7 7 C 1.40026 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00671 * 185.14977 * 7 2 1 9 9 C 1.41340 * 119.99841 * 5.14504 * 7 2 1 10 10 C 1.40632 * 119.78560 * 174.85371 * 9 7 2 11 11 C 1.38308 * 119.13272 * 180.02562 * 10 9 7 12 12 C 1.38696 * 118.67260 * 359.97438 * 11 10 9 13 13 C 1.39667 * 119.49010 * 0.27467 * 12 11 10 14 14 N 1.39116 * 119.57371 * 179.70492 * 13 12 11 15 15 C 1.34776 * 120.00065 * 339.02152 * 14 13 12 16 16 O 1.21362 * 119.99986 * 3.71164 * 15 14 13 17 17 C 1.49369 * 120.00422 * 183.71325 * 15 14 13 18 18 O 1.21361 * 119.99633 * 0.02562 * 17 15 14 19 19 N 1.34776 * 120.00422 * 179.97438 * 17 15 14 20 20 C 1.46502 * 119.99953 * 180.02562 * 19 17 15 21 21 C 1.52998 * 109.46961 * 180.02562 * 20 19 17 22 22 H 1.09002 * 110.34273 * 304.16562 * 21 20 19 23 23 C 1.51106 * 110.38968 * 66.45028 * 21 20 19 24 24 C 1.30523 * 111.10534 * 135.24424 * 23 21 20 25 25 C 1.51105 * 111.10357 * 0.02562 * 24 23 21 26 26 C 1.54627 * 104.72577 * 343.55732 * 25 24 23 27 27 N 1.31954 * 120.84814 * 359.42577 * 13 12 11 28 28 H 0.96997 * 119.99771 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.43549 * 0.02562 * 10 9 7 30 30 H 1.07996 * 120.66104 * 179.97438 * 11 10 9 31 31 H 1.07997 * 120.24917 * 180.02562 * 12 11 10 32 32 H 0.96994 * 120.00321 * 159.02446 * 14 13 12 33 33 H 0.97002 * 119.99896 * 0.02562 * 19 17 15 34 34 H 1.08997 * 109.46724 * 299.99813 * 20 19 17 35 35 H 1.08991 * 109.47197 * 59.99765 * 20 19 17 36 36 H 1.08008 * 124.44438 * 315.23100 * 23 21 20 37 37 H 1.07995 * 124.44623 * 180.02562 * 24 23 21 38 38 H 1.09003 * 110.38461 * 102.37046 * 25 24 23 39 39 H 1.08998 * 110.38036 * 224.74470 * 25 24 23 40 40 H 1.09001 * 111.04109 * 266.60492 * 26 25 24 41 41 H 1.09001 * 111.04096 * 142.66426 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3833 2.1074 -1.3947 5 1 1.4956 2.6199 0.8030 6 1 3.5878 1.4120 0.5918 7 6 2.0076 -1.2126 -0.0005 8 1 3.0843 -1.2146 0.0834 9 6 1.3052 -2.4342 -0.1109 10 6 2.0171 -3.6420 -0.2202 11 6 1.3162 -4.8294 -0.3280 12 6 -0.0701 -4.7865 -0.3238 13 6 -0.7196 -3.5546 -0.2176 14 7 -2.1100 -3.5091 -0.2195 15 6 -2.8172 -4.5352 -0.7328 16 8 -2.2440 -5.5277 -1.1317 17 6 -4.3065 -4.4509 -0.8107 18 8 -4.8797 -3.4581 -0.4122 19 7 -5.0136 -5.4767 -1.3244 20 6 -6.4743 -5.3937 -1.4013 21 6 -7.0264 -6.6801 -2.0187 22 1 -6.5693 -6.8600 -2.9918 23 6 -6.7824 -7.8530 -1.0978 24 6 -7.8465 -8.6024 -0.9991 25 6 -8.9774 -8.0546 -1.8383 26 6 -8.5647 -6.5977 -2.1511 27 7 -0.0313 -2.4340 -0.1100 28 1 -0.4849 0.8400 -0.0004 29 1 3.0971 -3.6424 -0.2200 30 1 1.8379 -5.7711 -0.4136 31 1 -0.6429 -5.6984 -0.4062 32 1 -2.5705 -2.7388 0.1485 33 1 -4.5555 -6.2701 -1.6433 34 1 -6.8842 -5.2670 -0.3993 35 1 -6.7577 -4.5425 -2.0202 36 1 -5.8498 -8.0459 -0.5882 37 1 -7.9102 -9.4965 -0.3967 38 1 -9.0778 -8.6272 -2.7603 39 1 -9.9107 -8.0725 -1.2756 40 1 -8.9836 -5.9066 -1.4196 41 1 -8.8559 -6.3172 -3.1634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890477375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:30 Heat of formation + Delta-G solvation = -5.327870 kcal Electronic energy + Delta-G solvation = -24812.836036 eV Core-core repulsion = 21079.456417 eV Total energy + Delta-G solvation = -3733.379619 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66247 -39.44256 -38.59108 -37.55088 -35.16603 -34.18414 -33.27450 -30.48513 -30.32725 -29.41046 -29.17258 -26.12007 -25.25217 -23.59681 -21.68611 -21.39075 -21.03589 -19.82225 -19.04269 -18.43368 -17.57394 -16.70977 -16.40036 -16.15296 -15.75159 -15.64551 -15.08521 -14.77385 -14.53415 -14.31093 -13.92654 -13.60492 -13.20232 -12.93163 -12.43002 -12.32167 -12.24619 -12.23983 -12.05846 -11.70762 -11.62251 -11.55054 -11.30094 -11.27484 -11.04385 -10.68770 -10.60718 -10.12176 -9.97346 -9.32507 -9.26416 -9.25965 -8.95061 -8.10863 -7.74819 -7.23584 -6.45080 -4.55200 1.51182 1.92318 2.48311 2.73306 2.94196 3.08752 3.12053 3.20485 3.55627 3.85079 3.93757 4.20692 4.27146 4.47426 4.69751 4.74463 4.85240 4.95909 5.11562 5.13006 5.35774 5.45451 5.52678 5.59915 5.71767 5.83755 5.87922 6.08246 6.12562 6.20663 6.31030 6.52838 6.63582 6.67588 6.73975 7.07285 7.13243 7.34710 7.41344 7.67238 7.80335 7.92147 8.03106 8.21608 8.42043 8.65364 8.89459 9.97102 10.28215 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.002509 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.814914 B =11155.462137 C =12093.437604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.087 0.913 9 C 0.276 3.724 10 C -0.281 4.281 11 C -0.051 4.051 12 C -0.313 4.313 13 C 0.349 3.651 14 N -0.610 5.610 15 C 0.504 3.496 16 O -0.505 6.505 17 C 0.512 3.488 18 O -0.516 6.516 19 N -0.703 5.703 20 C 0.127 3.873 21 C -0.082 4.082 22 H 0.091 0.909 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.102 4.102 26 C -0.117 4.117 27 N -0.502 5.502 28 H 0.273 0.727 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.419 0.581 33 H 0.413 0.587 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.596 -11.257 -3.213 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.340 5.340 2 C -0.156 4.156 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.464 4.464 8 H 0.105 0.895 9 C 0.150 3.850 10 C -0.304 4.304 11 C -0.075 4.075 12 C -0.338 4.338 13 C 0.115 3.885 14 N -0.255 5.255 15 C 0.285 3.715 16 O -0.381 6.381 17 C 0.292 3.708 18 O -0.391 6.391 19 N -0.357 5.357 20 C 0.004 3.996 21 C -0.100 4.100 22 H 0.109 0.891 23 C -0.181 4.181 24 C -0.184 4.184 25 C -0.139 4.139 26 C -0.155 4.155 27 N -0.221 5.221 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.257 0.743 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.269 -10.276 -3.136 19.497 hybrid contribution 0.870 -0.046 -0.056 0.873 sum -15.399 -10.322 -3.191 18.811 Atomic orbital electron populations 1.70101 1.07232 1.27834 1.28866 1.26066 0.94907 1.01126 0.93489 0.86295 0.80515 0.80858 0.79043 1.19512 1.20128 1.18498 1.19589 0.94568 0.89250 1.43021 0.89509 1.18207 0.86226 0.92206 0.88362 1.21772 0.98906 0.93700 1.16026 1.20834 0.93655 0.96724 0.96336 1.21775 0.94774 0.97595 1.19659 1.18454 0.82169 0.91298 0.96615 1.42859 1.05890 1.20817 1.55971 1.19880 0.87688 0.84151 0.79830 1.90640 1.70246 1.30635 1.46549 1.20167 0.88250 0.83555 0.78779 1.90778 1.71630 1.30507 1.46206 1.45705 1.07491 1.19948 1.62591 1.21496 0.78713 0.97540 1.01837 1.21327 0.96685 0.93002 0.99004 0.89054 1.23308 0.99211 0.96424 0.99118 1.23292 0.95573 0.99930 0.99561 1.21377 0.97835 0.95351 0.99298 1.22469 0.93488 0.97063 1.02487 1.68035 1.08432 1.24177 1.21412 0.91591 0.88035 0.88112 0.84572 0.74333 0.75070 0.90741 0.90718 0.85535 0.85799 0.90603 0.91039 0.90457 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.97 11.48 55.55 0.64 -18.33 16 2 C 0.07 1.75 5.49 -17.35 -0.10 1.66 16 3 Si 0.91 18.53 29.56 -169.99 -5.03 13.50 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.43 -11.48 9.13 -37.73 -0.34 -11.83 16 8 H 0.09 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.28 7.58 6.55 -84.99 -0.56 7.03 16 10 C -0.28 -6.95 9.83 -38.65 -0.38 -7.33 16 11 C -0.05 -1.18 10.15 -39.39 -0.40 -1.58 16 12 C -0.31 -7.49 8.89 -38.88 -0.35 -7.84 16 13 C 0.35 8.70 7.50 -155.09 -1.16 7.54 16 14 N -0.61 -13.00 5.40 -11.84 -0.06 -13.06 16 15 C 0.50 9.43 7.78 -11.62 -0.09 9.34 16 16 O -0.51 -9.95 13.14 5.49 0.07 -9.88 16 17 C 0.51 8.09 7.89 -11.62 -0.09 8.00 16 18 O -0.52 -9.23 16.48 5.49 0.09 -9.14 16 19 N -0.70 -8.33 5.38 -60.76 -0.33 -8.66 16 20 C 0.13 1.22 5.01 -4.04 -0.02 1.20 16 21 C -0.08 -0.61 2.98 -90.72 -0.27 -0.88 16 22 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 23 C -0.16 -1.27 9.73 -35.69 -0.35 -1.62 16 24 C -0.17 -1.17 10.78 -35.69 -0.38 -1.56 16 25 C -0.10 -0.61 6.81 -26.83 -0.18 -0.79 16 26 C -0.12 -0.72 6.71 -25.02 -0.17 -0.89 16 27 N -0.50 -13.81 7.91 -10.28 -0.08 -13.89 16 28 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 29 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 30 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 31 H 0.14 3.13 5.17 -52.92 -0.27 2.85 16 32 H 0.42 8.68 8.30 -40.82 -0.34 8.34 16 33 H 0.41 4.40 7.77 -40.82 -0.32 4.09 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.47 7.91 -51.93 -0.41 0.06 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -30.92 352.28 -9.34 -40.26 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.11 Total: 13.42 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -4.84 Total: 0.46 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.17 Total: -53.94 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.16 Total: -19.01 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.92 -9.34 -40.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890477375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.935 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds