Wall clock time and date at job start Tue Mar 31 2020 10:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86808 * 119.99920 * 2 1 4 4 H 1.48496 * 109.46891 * 274.99610 * 3 2 1 5 5 H 1.48496 * 109.46840 * 34.99697 * 3 2 1 6 6 H 1.48502 * 109.46827 * 154.99811 * 3 2 1 7 7 C 1.40026 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00671 * 185.14977 * 7 2 1 9 9 C 1.41340 * 119.99841 * 5.14504 * 7 2 1 10 10 C 1.40632 * 119.78560 * 174.85371 * 9 7 2 11 11 C 1.38308 * 119.13272 * 180.02562 * 10 9 7 12 12 C 1.38696 * 118.67260 * 359.97438 * 11 10 9 13 13 C 1.39667 * 119.49010 * 0.27467 * 12 11 10 14 14 N 1.39116 * 119.57371 * 179.70492 * 13 12 11 15 15 C 1.34776 * 120.00065 * 339.02152 * 14 13 12 16 16 O 1.21362 * 119.99986 * 3.71164 * 15 14 13 17 17 C 1.49369 * 120.00422 * 183.71325 * 15 14 13 18 18 O 1.21361 * 119.99633 * 0.02562 * 17 15 14 19 19 N 1.34776 * 120.00422 * 179.97438 * 17 15 14 20 20 C 1.46502 * 119.99953 * 180.02562 * 19 17 15 21 21 C 1.52998 * 109.46961 * 180.02562 * 20 19 17 22 22 H 1.09002 * 110.34273 * 304.16562 * 21 20 19 23 23 C 1.51106 * 110.38968 * 66.45028 * 21 20 19 24 24 C 1.30523 * 111.10534 * 135.24424 * 23 21 20 25 25 C 1.51105 * 111.10357 * 0.02562 * 24 23 21 26 26 C 1.54627 * 104.72577 * 343.55732 * 25 24 23 27 27 N 1.31954 * 120.84814 * 359.42577 * 13 12 11 28 28 H 0.96997 * 119.99771 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.43549 * 0.02562 * 10 9 7 30 30 H 1.07996 * 120.66104 * 179.97438 * 11 10 9 31 31 H 1.07997 * 120.24917 * 180.02562 * 12 11 10 32 32 H 0.96994 * 120.00321 * 159.02446 * 14 13 12 33 33 H 0.97002 * 119.99896 * 0.02562 * 19 17 15 34 34 H 1.08997 * 109.46724 * 299.99813 * 20 19 17 35 35 H 1.08991 * 109.47197 * 59.99765 * 20 19 17 36 36 H 1.08008 * 124.44438 * 315.23100 * 23 21 20 37 37 H 1.07995 * 124.44623 * 180.02562 * 24 23 21 38 38 H 1.09003 * 110.38461 * 102.37046 * 25 24 23 39 39 H 1.08998 * 110.38036 * 224.74470 * 25 24 23 40 40 H 1.09001 * 111.04109 * 266.60492 * 26 25 24 41 41 H 1.09001 * 111.04096 * 142.66426 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3833 2.1074 -1.3947 5 1 1.4956 2.6199 0.8030 6 1 3.5878 1.4120 0.5918 7 6 2.0076 -1.2126 -0.0005 8 1 3.0843 -1.2146 0.0834 9 6 1.3052 -2.4342 -0.1109 10 6 2.0171 -3.6420 -0.2202 11 6 1.3162 -4.8294 -0.3280 12 6 -0.0701 -4.7865 -0.3238 13 6 -0.7196 -3.5546 -0.2176 14 7 -2.1100 -3.5091 -0.2195 15 6 -2.8172 -4.5352 -0.7328 16 8 -2.2440 -5.5277 -1.1317 17 6 -4.3065 -4.4509 -0.8107 18 8 -4.8797 -3.4581 -0.4122 19 7 -5.0136 -5.4767 -1.3244 20 6 -6.4743 -5.3937 -1.4013 21 6 -7.0264 -6.6801 -2.0187 22 1 -6.5693 -6.8600 -2.9918 23 6 -6.7824 -7.8530 -1.0978 24 6 -7.8465 -8.6024 -0.9991 25 6 -8.9774 -8.0546 -1.8383 26 6 -8.5647 -6.5977 -2.1511 27 7 -0.0313 -2.4340 -0.1100 28 1 -0.4849 0.8400 -0.0004 29 1 3.0971 -3.6424 -0.2200 30 1 1.8379 -5.7711 -0.4136 31 1 -0.6429 -5.6984 -0.4062 32 1 -2.5705 -2.7388 0.1485 33 1 -4.5555 -6.2701 -1.6433 34 1 -6.8842 -5.2670 -0.3993 35 1 -6.7577 -4.5425 -2.0202 36 1 -5.8498 -8.0459 -0.5882 37 1 -7.9102 -9.4965 -0.3967 38 1 -9.0778 -8.6272 -2.7603 39 1 -9.9107 -8.0725 -1.2756 40 1 -8.9836 -5.9066 -1.4196 41 1 -8.8559 -6.3172 -3.1634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890477375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:30 Heat of formation + Delta-G solvation = -24.688923 kcal Electronic energy + Delta-G solvation = -24813.675594 eV Core-core repulsion = 21079.456417 eV Total energy + Delta-G solvation = -3734.219177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.11570 -40.61831 -39.69879 -39.16854 -36.53048 -35.65968 -35.06870 -32.38719 -31.37665 -30.98938 -29.74975 -27.76794 -26.65880 -24.75524 -23.56581 -22.88546 -21.86752 -21.16521 -19.95077 -19.54172 -19.37339 -18.20343 -17.70809 -17.32336 -16.88278 -16.75568 -16.57469 -16.35314 -16.04521 -15.61612 -15.31341 -15.02245 -14.66911 -14.38922 -14.06712 -13.85101 -13.30011 -13.06239 -12.93680 -12.85078 -12.77444 -12.74021 -12.62038 -12.34601 -12.09448 -12.05313 -11.90295 -11.83764 -11.71560 -11.08153 -10.54083 -10.36518 -10.03056 -9.82285 -9.68570 -9.12478 -8.33330 -6.53947 0.03428 0.89455 1.10746 1.18931 1.36866 1.42136 1.54268 1.56806 2.05740 2.23131 2.51568 2.84299 3.27217 3.63598 3.70498 3.87065 3.87342 4.29463 4.29959 4.31844 4.52555 4.53775 4.60683 4.68563 4.82019 4.85270 4.87726 4.93329 4.96838 5.00085 5.11229 5.20772 5.25098 5.37683 5.50643 5.55394 5.64290 5.79929 5.90525 5.96682 6.08494 6.19063 6.34336 6.63315 6.73063 6.81965 6.95762 8.04215 8.42678 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.002509 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.814914 B =11155.462137 C =12093.437604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.023 3.977 3 Si 0.990 3.010 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.463 4.463 8 H 0.096 0.904 9 C 0.242 3.758 10 C -0.297 4.297 11 C -0.048 4.048 12 C -0.321 4.321 13 C 0.335 3.665 14 N -0.617 5.617 15 C 0.506 3.494 16 O -0.513 6.513 17 C 0.520 3.480 18 O -0.539 6.539 19 N -0.680 5.680 20 C 0.126 3.874 21 C -0.075 4.075 22 H 0.097 0.903 23 C -0.183 4.183 24 C -0.163 4.163 25 C -0.102 4.102 26 C -0.116 4.116 27 N -0.533 5.533 28 H 0.279 0.721 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.419 0.581 33 H 0.421 0.579 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.312 -11.904 -3.836 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.199 4.199 3 Si 0.810 3.190 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.494 4.494 8 H 0.114 0.886 9 C 0.115 3.885 10 C -0.319 4.319 11 C -0.072 4.072 12 C -0.345 4.345 13 C 0.101 3.899 14 N -0.262 5.262 15 C 0.288 3.712 16 O -0.389 6.389 17 C 0.300 3.700 18 O -0.416 6.416 19 N -0.333 5.333 20 C 0.004 3.996 21 C -0.093 4.093 22 H 0.115 0.885 23 C -0.201 4.201 24 C -0.180 4.180 25 C -0.139 4.139 26 C -0.154 4.154 27 N -0.253 5.253 28 H 0.090 0.910 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.164 0.836 32 H 0.256 0.744 33 H 0.258 0.742 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.018 -10.994 -3.777 20.609 hybrid contribution 0.993 -0.018 0.119 1.001 sum -16.024 -11.012 -3.658 19.785 Atomic orbital electron populations 1.70202 1.08942 1.29174 1.29429 1.27022 0.95741 1.04661 0.92437 0.85084 0.79172 0.75627 0.79140 1.19059 1.19403 1.17570 1.19985 0.95234 0.90082 1.44133 0.88629 1.18741 0.86856 0.93729 0.89158 1.21977 0.99838 0.93551 1.16559 1.21244 0.93512 0.97805 0.94624 1.22046 0.95467 0.97552 1.19479 1.18821 0.83598 0.91306 0.96153 1.42902 1.04818 1.21695 1.56816 1.20427 0.89038 0.83148 0.78569 1.90603 1.70966 1.30752 1.46562 1.19593 0.86666 0.84258 0.79511 1.90778 1.71376 1.31611 1.47859 1.45711 1.08505 1.18784 1.60347 1.21714 0.76748 0.99121 1.02054 1.21307 0.97632 0.91458 0.98907 0.88468 1.23350 0.99475 0.97218 1.00085 1.23539 0.95607 0.99863 0.99033 1.21425 0.97733 0.95126 0.99621 1.22508 0.92171 0.97336 1.03351 1.68028 1.08939 1.25511 1.22786 0.91035 0.86383 0.84390 0.83561 0.74359 0.74163 0.91008 0.90408 0.86140 0.85006 0.89682 0.90143 0.90427 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.81 11.48 21.84 0.25 -40.56 16 2 C 0.02 1.18 5.49 85.29 0.47 1.65 16 3 Si 0.99 38.07 29.56 68.60 2.03 40.10 16 4 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16 7 C -0.46 -25.02 9.13 23.47 0.21 -24.80 16 8 H 0.10 4.77 7.85 -2.91 -0.02 4.75 16 9 C 0.24 13.57 6.55 40.21 0.26 13.83 16 10 C -0.30 -14.72 9.83 22.87 0.22 -14.49 16 11 C -0.05 -2.16 10.15 22.40 0.23 -1.93 16 12 C -0.32 -15.31 8.89 22.72 0.20 -15.11 16 13 C 0.34 17.09 7.50 133.29 1.00 18.10 16 14 N -0.62 -26.92 5.40 -309.72 -1.67 -28.59 16 15 C 0.51 19.01 7.78 87.24 0.68 19.68 16 16 O -0.51 -19.98 13.14 -3.28 -0.04 -20.02 16 17 C 0.52 16.27 7.89 87.24 0.69 16.95 16 18 O -0.54 -19.25 16.48 -3.28 -0.05 -19.30 16 19 N -0.68 -15.40 5.38 -464.50 -2.50 -17.90 16 20 C 0.13 2.24 5.01 86.38 0.43 2.67 16 21 C -0.07 -0.97 2.98 -10.86 -0.03 -1.00 16 22 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 23 C -0.18 -2.60 9.73 26.27 0.26 -2.35 16 24 C -0.16 -2.00 10.78 26.27 0.28 -1.71 16 25 C -0.10 -0.98 6.81 30.53 0.21 -0.77 16 26 C -0.12 -1.16 6.71 31.70 0.21 -0.95 16 27 N -0.53 -30.23 7.91 -186.43 -1.47 -31.70 16 28 H 0.28 13.66 8.29 -92.71 -0.77 12.89 16 29 H 0.12 5.28 8.06 -2.91 -0.02 5.26 16 30 H 0.14 5.11 8.06 -2.91 -0.02 5.09 16 31 H 0.15 6.62 5.17 -9.74 -0.05 6.57 16 32 H 0.42 18.04 8.30 -92.71 -0.77 17.28 16 33 H 0.42 8.42 7.77 -92.71 -0.72 7.70 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.12 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.79 7.91 -2.39 -0.02 0.77 16 41 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -67.37 352.28 1.42 -65.95 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -0.44 Total: 42.24 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 5.33 Total: 9.78 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -5.39 Total: -118.74 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.10 Total: -39.32 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -67.37 1.42 -65.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890477375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.257 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds