Wall clock time and date at job start Tue Mar 31 2020 10:46:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30741 * 1
3 3 Si 1.86808 * 119.99920 * 2 1
4 4 H 1.48496 * 109.46891 * 274.99610 * 3 2 1
5 5 H 1.48496 * 109.46840 * 34.99697 * 3 2 1
6 6 H 1.48502 * 109.46827 * 154.99811 * 3 2 1
7 7 C 1.40026 * 120.00228 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00671 * 185.14977 * 7 2 1
9 9 C 1.41340 * 119.99841 * 5.14504 * 7 2 1
10 10 C 1.40632 * 119.78560 * 174.85371 * 9 7 2
11 11 C 1.38308 * 119.13272 * 180.02562 * 10 9 7
12 12 C 1.38696 * 118.67260 * 359.97438 * 11 10 9
13 13 C 1.39667 * 119.49010 * 0.27467 * 12 11 10
14 14 N 1.39116 * 119.57371 * 179.70492 * 13 12 11
15 15 C 1.34776 * 120.00065 * 339.02152 * 14 13 12
16 16 O 1.21362 * 119.99986 * 3.71164 * 15 14 13
17 17 C 1.49369 * 120.00422 * 183.71325 * 15 14 13
18 18 O 1.21361 * 119.99633 * 0.02562 * 17 15 14
19 19 N 1.34776 * 120.00422 * 179.97438 * 17 15 14
20 20 C 1.46502 * 119.99953 * 180.02562 * 19 17 15
21 21 C 1.52998 * 109.46961 * 180.02562 * 20 19 17
22 22 H 1.09002 * 110.34273 * 304.16562 * 21 20 19
23 23 C 1.51106 * 110.38968 * 66.45028 * 21 20 19
24 24 C 1.30523 * 111.10534 * 135.24424 * 23 21 20
25 25 C 1.51105 * 111.10357 * 0.02562 * 24 23 21
26 26 C 1.54627 * 104.72577 * 343.55732 * 25 24 23
27 27 N 1.31954 * 120.84814 * 359.42577 * 13 12 11
28 28 H 0.96997 * 119.99771 * 0.02562 * 1 2 3
29 29 H 1.07999 * 120.43549 * 0.02562 * 10 9 7
30 30 H 1.07996 * 120.66104 * 179.97438 * 11 10 9
31 31 H 1.07997 * 120.24917 * 180.02562 * 12 11 10
32 32 H 0.96994 * 120.00321 * 159.02446 * 14 13 12
33 33 H 0.97002 * 119.99896 * 0.02562 * 19 17 15
34 34 H 1.08997 * 109.46724 * 299.99813 * 20 19 17
35 35 H 1.08991 * 109.47197 * 59.99765 * 20 19 17
36 36 H 1.08008 * 124.44438 * 315.23100 * 23 21 20
37 37 H 1.07995 * 124.44623 * 180.02562 * 24 23 21
38 38 H 1.09003 * 110.38461 * 102.37046 * 25 24 23
39 39 H 1.08998 * 110.38036 * 224.74470 * 25 24 23
40 40 H 1.09001 * 111.04109 * 266.60492 * 26 25 24
41 41 H 1.09001 * 111.04096 * 142.66426 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6178 0.0000
4 1 2.3833 2.1074 -1.3947
5 1 1.4956 2.6199 0.8030
6 1 3.5878 1.4120 0.5918
7 6 2.0076 -1.2126 -0.0005
8 1 3.0843 -1.2146 0.0834
9 6 1.3052 -2.4342 -0.1109
10 6 2.0171 -3.6420 -0.2202
11 6 1.3162 -4.8294 -0.3280
12 6 -0.0701 -4.7865 -0.3238
13 6 -0.7196 -3.5546 -0.2176
14 7 -2.1100 -3.5091 -0.2195
15 6 -2.8172 -4.5352 -0.7328
16 8 -2.2440 -5.5277 -1.1317
17 6 -4.3065 -4.4509 -0.8107
18 8 -4.8797 -3.4581 -0.4122
19 7 -5.0136 -5.4767 -1.3244
20 6 -6.4743 -5.3937 -1.4013
21 6 -7.0264 -6.6801 -2.0187
22 1 -6.5693 -6.8600 -2.9918
23 6 -6.7824 -7.8530 -1.0978
24 6 -7.8465 -8.6024 -0.9991
25 6 -8.9774 -8.0546 -1.8383
26 6 -8.5647 -6.5977 -2.1511
27 7 -0.0313 -2.4340 -0.1100
28 1 -0.4849 0.8400 -0.0004
29 1 3.0971 -3.6424 -0.2200
30 1 1.8379 -5.7711 -0.4136
31 1 -0.6429 -5.6984 -0.4062
32 1 -2.5705 -2.7388 0.1485
33 1 -4.5555 -6.2701 -1.6433
34 1 -6.8842 -5.2670 -0.3993
35 1 -6.7577 -4.5425 -2.0202
36 1 -5.8498 -8.0459 -0.5882
37 1 -7.9102 -9.4965 -0.3967
38 1 -9.0778 -8.6272 -2.7603
39 1 -9.9107 -8.0725 -1.2756
40 1 -8.9836 -5.9066 -1.4196
41 1 -8.8559 -6.3172 -3.1634
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000890477375.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:46:30
Heat of formation + Delta-G solvation = -24.688923 kcal
Electronic energy + Delta-G solvation = -24813.675594 eV
Core-core repulsion = 21079.456417 eV
Total energy + Delta-G solvation = -3734.219177 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.11570 -40.61831 -39.69879 -39.16854 -36.53048 -35.65968 -35.06870 -32.38719
-31.37665 -30.98938 -29.74975 -27.76794 -26.65880 -24.75524 -23.56581 -22.88546
-21.86752 -21.16521 -19.95077 -19.54172 -19.37339 -18.20343 -17.70809 -17.32336
-16.88278 -16.75568 -16.57469 -16.35314 -16.04521 -15.61612 -15.31341 -15.02245
-14.66911 -14.38922 -14.06712 -13.85101 -13.30011 -13.06239 -12.93680 -12.85078
-12.77444 -12.74021 -12.62038 -12.34601 -12.09448 -12.05313 -11.90295 -11.83764
-11.71560 -11.08153 -10.54083 -10.36518 -10.03056 -9.82285 -9.68570 -9.12478
-8.33330 -6.53947 0.03428 0.89455 1.10746 1.18931 1.36866 1.42136
1.54268 1.56806 2.05740 2.23131 2.51568 2.84299 3.27217 3.63598
3.70498 3.87065 3.87342 4.29463 4.29959 4.31844 4.52555 4.53775
4.60683 4.68563 4.82019 4.85270 4.87726 4.93329 4.96838 5.00085
5.11229 5.20772 5.25098 5.37683 5.50643 5.55394 5.64290 5.79929
5.90525 5.96682 6.08494 6.19063 6.34336 6.63315 6.73063 6.81965
6.95762 8.04215 8.42678
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.026021 B = 0.002509 C = 0.002315
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1075.814914 B =11155.462137 C =12093.437604
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.755 5.755
2 C 0.023 3.977
3 Si 0.990 3.010
4 H -0.266 1.266
5 H -0.269 1.269
6 H -0.252 1.252
7 C -0.463 4.463
8 H 0.096 0.904
9 C 0.242 3.758
10 C -0.297 4.297
11 C -0.048 4.048
12 C -0.321 4.321
13 C 0.335 3.665
14 N -0.617 5.617
15 C 0.506 3.494
16 O -0.513 6.513
17 C 0.520 3.480
18 O -0.539 6.539
19 N -0.680 5.680
20 C 0.126 3.874
21 C -0.075 4.075
22 H 0.097 0.903
23 C -0.183 4.183
24 C -0.163 4.163
25 C -0.102 4.102
26 C -0.116 4.116
27 N -0.533 5.533
28 H 0.279 0.721
29 H 0.118 0.882
30 H 0.138 0.862
31 H 0.147 0.853
32 H 0.419 0.581
33 H 0.421 0.579
34 H 0.072 0.928
35 H 0.078 0.922
36 H 0.121 0.879
37 H 0.132 0.868
38 H 0.085 0.915
39 H 0.080 0.920
40 H 0.077 0.923
41 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.312 -11.904 -3.836 20.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.377 5.377
2 C -0.199 4.199
3 Si 0.810 3.190
4 H -0.191 1.191
5 H -0.194 1.194
6 H -0.176 1.176
7 C -0.494 4.494
8 H 0.114 0.886
9 C 0.115 3.885
10 C -0.319 4.319
11 C -0.072 4.072
12 C -0.345 4.345
13 C 0.101 3.899
14 N -0.262 5.262
15 C 0.288 3.712
16 O -0.389 6.389
17 C 0.300 3.700
18 O -0.416 6.416
19 N -0.333 5.333
20 C 0.004 3.996
21 C -0.093 4.093
22 H 0.115 0.885
23 C -0.201 4.201
24 C -0.180 4.180
25 C -0.139 4.139
26 C -0.154 4.154
27 N -0.253 5.253
28 H 0.090 0.910
29 H 0.136 0.864
30 H 0.156 0.844
31 H 0.164 0.836
32 H 0.256 0.744
33 H 0.258 0.742
34 H 0.090 0.910
35 H 0.096 0.904
36 H 0.139 0.861
37 H 0.150 0.850
38 H 0.103 0.897
39 H 0.099 0.901
40 H 0.096 0.904
41 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -17.018 -10.994 -3.777 20.609
hybrid contribution 0.993 -0.018 0.119 1.001
sum -16.024 -11.012 -3.658 19.785
Atomic orbital electron populations
1.70202 1.08942 1.29174 1.29429 1.27022 0.95741 1.04661 0.92437
0.85084 0.79172 0.75627 0.79140 1.19059 1.19403 1.17570 1.19985
0.95234 0.90082 1.44133 0.88629 1.18741 0.86856 0.93729 0.89158
1.21977 0.99838 0.93551 1.16559 1.21244 0.93512 0.97805 0.94624
1.22046 0.95467 0.97552 1.19479 1.18821 0.83598 0.91306 0.96153
1.42902 1.04818 1.21695 1.56816 1.20427 0.89038 0.83148 0.78569
1.90603 1.70966 1.30752 1.46562 1.19593 0.86666 0.84258 0.79511
1.90778 1.71376 1.31611 1.47859 1.45711 1.08505 1.18784 1.60347
1.21714 0.76748 0.99121 1.02054 1.21307 0.97632 0.91458 0.98907
0.88468 1.23350 0.99475 0.97218 1.00085 1.23539 0.95607 0.99863
0.99033 1.21425 0.97733 0.95126 0.99621 1.22508 0.92171 0.97336
1.03351 1.68028 1.08939 1.25511 1.22786 0.91035 0.86383 0.84390
0.83561 0.74359 0.74163 0.91008 0.90408 0.86140 0.85006 0.89682
0.90143 0.90427 0.89139
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -40.81 11.48 21.84 0.25 -40.56 16
2 C 0.02 1.18 5.49 85.29 0.47 1.65 16
3 Si 0.99 38.07 29.56 68.60 2.03 40.10 16
4 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16
5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16
6 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16
7 C -0.46 -25.02 9.13 23.47 0.21 -24.80 16
8 H 0.10 4.77 7.85 -2.91 -0.02 4.75 16
9 C 0.24 13.57 6.55 40.21 0.26 13.83 16
10 C -0.30 -14.72 9.83 22.87 0.22 -14.49 16
11 C -0.05 -2.16 10.15 22.40 0.23 -1.93 16
12 C -0.32 -15.31 8.89 22.72 0.20 -15.11 16
13 C 0.34 17.09 7.50 133.29 1.00 18.10 16
14 N -0.62 -26.92 5.40 -309.72 -1.67 -28.59 16
15 C 0.51 19.01 7.78 87.24 0.68 19.68 16
16 O -0.51 -19.98 13.14 -3.28 -0.04 -20.02 16
17 C 0.52 16.27 7.89 87.24 0.69 16.95 16
18 O -0.54 -19.25 16.48 -3.28 -0.05 -19.30 16
19 N -0.68 -15.40 5.38 -464.50 -2.50 -17.90 16
20 C 0.13 2.24 5.01 86.38 0.43 2.67 16
21 C -0.07 -0.97 2.98 -10.86 -0.03 -1.00 16
22 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16
23 C -0.18 -2.60 9.73 26.27 0.26 -2.35 16
24 C -0.16 -2.00 10.78 26.27 0.28 -1.71 16
25 C -0.10 -0.98 6.81 30.53 0.21 -0.77 16
26 C -0.12 -1.16 6.71 31.70 0.21 -0.95 16
27 N -0.53 -30.23 7.91 -186.43 -1.47 -31.70 16
28 H 0.28 13.66 8.29 -92.71 -0.77 12.89 16
29 H 0.12 5.28 8.06 -2.91 -0.02 5.26 16
30 H 0.14 5.11 8.06 -2.91 -0.02 5.09 16
31 H 0.15 6.62 5.17 -9.74 -0.05 6.57 16
32 H 0.42 18.04 8.30 -92.71 -0.77 17.28 16
33 H 0.42 8.42 7.77 -92.71 -0.72 7.70 16
34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
36 H 0.12 1.81 8.06 -2.91 -0.02 1.79 16
37 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16
38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16
39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16
40 H 0.08 0.79 7.91 -2.39 -0.02 0.77 16
41 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
Total: -1.00 -67.37 352.28 1.42 -65.95
By element:
Atomic # 1 Polarization: 42.69 SS G_CDS: -0.44 Total: 42.24 kcal
Atomic # 6 Polarization: 4.45 SS G_CDS: 5.33 Total: 9.78 kcal
Atomic # 7 Polarization: -113.35 SS G_CDS: -5.39 Total: -118.74 kcal
Atomic # 8 Polarization: -39.23 SS G_CDS: -0.10 Total: -39.32 kcal
Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal
Total: -67.37 1.42 -65.95 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000890477375.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.257 kcal
(2) G-P(sol) polarization free energy of solvation -67.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.112 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds