Wall clock time and date at job start Tue Mar 31 2020 10:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99845 * 2 1 4 4 H 1.48501 * 109.47022 * 274.06376 * 3 2 1 5 5 H 1.48499 * 109.47170 * 34.06692 * 3 2 1 6 6 H 1.48500 * 109.46799 * 154.06413 * 3 2 1 7 7 C 1.38812 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00241 * 197.52427 * 7 2 1 9 9 N 1.36935 * 119.99524 * 17.53098 * 7 2 1 10 10 C 1.46930 * 120.62947 * 207.99877 * 9 7 2 11 11 C 1.53192 * 108.77618 * 233.63022 * 10 9 7 12 12 C 1.53042 * 109.31204 * 305.36155 * 11 10 9 13 13 N 1.46501 * 109.46098 * 181.38307 * 12 11 10 14 14 C 1.39702 * 119.99831 * 155.00113 * 13 12 11 15 15 C 1.39313 * 120.49176 * 180.02562 * 14 13 12 16 16 C 1.38498 * 118.35660 * 179.74913 * 15 14 13 17 17 C 1.38276 * 119.24206 * 0.24891 * 16 15 14 18 18 C 1.50698 * 119.53186 * 180.02562 * 17 16 15 19 19 F 1.39904 * 109.47216 * 90.00398 * 18 17 16 20 20 F 1.39906 * 109.47001 * 209.99959 * 18 17 16 21 21 F 1.39905 * 109.47520 * 330.00035 * 18 17 16 22 22 N 1.31844 * 120.92756 * 0.02562 * 17 16 15 23 23 C 1.31815 * 121.80185 * 359.97438 * 22 17 16 24 24 C 1.53043 * 109.53785 * 61.36605 * 12 11 10 25 25 C 1.46925 * 120.63520 * 28.01930 * 9 7 2 26 26 H 0.97002 * 120.00222 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58798 * 113.84289 * 10 9 7 28 28 H 1.08997 * 109.70384 * 353.48481 * 10 9 7 29 29 H 1.08998 * 109.49974 * 185.41114 * 11 10 9 30 30 H 1.09000 * 109.49828 * 65.31523 * 11 10 9 31 31 H 1.09002 * 109.45965 * 301.36122 * 12 11 10 32 32 H 0.96994 * 120.00207 * 335.00349 * 13 12 11 33 33 H 1.08001 * 120.81959 * 0.02562 * 15 14 13 34 34 H 1.08008 * 120.37688 * 180.22876 * 16 15 14 35 35 H 1.08004 * 119.67067 * 179.97438 * 23 22 17 36 36 H 1.09003 * 109.49701 * 58.58258 * 24 12 11 37 37 H 1.09001 * 109.50031 * 178.68535 * 24 12 11 38 38 H 1.09005 * 109.58655 * 246.15938 * 25 9 7 39 39 H 1.09001 * 109.58421 * 6.43773 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4117 2.0961 -1.3966 5 1 1.4932 2.6264 0.7843 6 1 3.5880 1.4169 0.6124 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2822 9 7 1.3733 -2.3606 -0.3562 10 6 1.8145 -3.6541 0.1832 11 6 2.0775 -4.6111 -0.9838 12 6 0.8284 -4.6905 -1.8645 13 7 1.0649 -5.6303 -2.9632 14 6 -0.0132 -6.2725 -3.5773 15 6 0.1999 -7.1684 -4.6226 16 6 -0.9004 -7.7841 -5.1959 17 6 -2.1644 -7.4881 -4.7197 18 6 -3.3660 -8.1547 -5.3383 19 9 -3.6402 -9.3461 -4.6580 20 9 -4.4709 -7.3012 -5.2478 21 9 -3.1028 -8.4356 -6.6833 22 7 -2.3329 -6.6311 -3.7321 23 6 -1.3138 -6.0230 -3.1585 24 6 0.5165 -3.3057 -2.4364 25 6 0.2359 -2.3339 -1.2859 26 1 -0.4850 0.8400 -0.0004 27 1 1.0367 -4.0666 0.8258 28 1 2.7304 -3.5192 0.7585 29 1 2.3126 -5.6022 -0.5957 30 1 2.9163 -4.2428 -1.5744 31 1 -0.0158 -5.0351 -1.2672 32 1 1.9699 -5.8067 -3.2643 33 1 1.1987 -7.3810 -4.9743 34 1 -0.7725 -8.4870 -6.0059 35 1 -1.4915 -5.3267 -2.3522 36 1 1.3700 -2.9496 -3.0133 37 1 -0.3595 -3.3676 -3.0821 38 1 -0.6707 -2.6387 -0.7630 39 1 0.1092 -1.3253 -1.6793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892403323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:34 Heat of formation + Delta-G solvation = -109.934609 kcal Electronic energy + Delta-G solvation = -26022.432648 eV Core-core repulsion = 21742.660201 eV Total energy + Delta-G solvation = -4279.772448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.12088 -48.65427 -48.59738 -41.49730 -39.55223 -36.95018 -34.50867 -33.34813 -32.31658 -31.64981 -30.42552 -27.25516 -26.52140 -24.98476 -23.88859 -23.52199 -22.77199 -20.97946 -19.66189 -19.50548 -19.42776 -18.83452 -18.20796 -17.46857 -16.80900 -16.31247 -15.92530 -15.66468 -15.47586 -15.42244 -15.31419 -15.16938 -15.05527 -14.87323 -14.77112 -14.75957 -14.64960 -14.46459 -13.98865 -13.86644 -13.17537 -13.08658 -12.95417 -12.71229 -12.61260 -12.28495 -12.05100 -11.92002 -11.78633 -11.32567 -11.23092 -10.74482 -10.71076 -10.54282 -8.76285 -8.68047 -7.88489 -5.33545 -0.04835 0.21098 1.46679 1.48569 1.56947 1.57104 2.19922 2.50868 2.52692 2.65454 3.01211 3.27684 3.45969 3.64208 3.69127 3.75452 3.84037 4.00449 4.05323 4.11081 4.28241 4.47775 4.53167 4.66825 4.72573 4.81956 4.93024 4.99004 5.00891 5.08596 5.15337 5.33042 5.37283 5.48405 5.64558 5.72828 6.02180 6.38532 6.59466 6.80443 7.14258 7.85604 8.35847 9.17842 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.002719 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.529064 B =10295.946908 C =10809.362154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.963 3.037 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.122 4.122 12 C 0.161 3.839 13 N -0.706 5.706 14 C 0.207 3.793 15 C -0.152 4.152 16 C -0.063 4.063 17 C -0.064 4.064 18 C 0.531 3.469 19 F -0.179 7.179 20 F -0.181 7.181 21 F -0.169 7.169 22 N -0.433 5.433 23 C 0.013 3.987 24 C -0.136 4.136 25 C 0.178 3.822 26 H 0.249 0.751 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.416 0.584 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.056 0.944 37 H 0.057 0.943 38 H -0.002 1.002 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -18.625 -11.574 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.391 4.391 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.015 3.985 11 C -0.162 4.162 12 C 0.056 3.944 13 N -0.331 5.331 14 C 0.096 3.904 15 C -0.181 4.181 16 C -0.084 4.084 17 C -0.204 4.204 18 C 0.475 3.525 19 F -0.161 7.161 20 F -0.163 7.163 21 F -0.150 7.150 22 N -0.141 5.141 23 C -0.152 4.152 24 C -0.177 4.177 25 C 0.052 3.948 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.254 0.746 33 H 0.198 0.802 34 H 0.191 0.809 35 H 0.174 0.826 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.017 0.983 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.023 -18.210 -11.107 21.354 hybrid contribution 0.699 1.100 -0.143 1.311 sum 1.722 -17.110 -11.250 20.550 Atomic orbital electron populations 1.70178 1.06673 1.25799 1.55368 1.25779 0.95963 1.01502 1.01358 0.85309 0.78344 0.79851 0.77287 1.21461 1.22487 1.19060 1.19526 0.93105 0.86034 1.40484 0.91262 1.44352 1.36416 1.02435 1.50200 1.21033 0.97883 0.85550 0.94025 1.22109 0.96499 1.00332 0.97228 1.20845 0.99047 0.87499 0.86989 1.44955 1.06827 1.44900 1.36466 1.19133 0.89297 0.90560 0.91415 1.21384 1.01357 0.98553 0.96846 1.21832 0.90160 0.97712 0.98707 1.20642 0.93042 1.04696 1.02053 1.17846 0.82470 0.76230 0.75907 1.93203 1.94489 1.48385 1.80014 1.93187 1.56401 1.70720 1.95960 1.93186 1.93874 1.93844 1.34139 1.66848 1.36193 1.04663 1.06386 1.22363 0.86884 1.03157 1.02830 1.22427 1.00838 0.95917 0.98484 1.20530 0.88030 0.97538 0.88713 0.94194 0.96485 0.92017 0.89065 0.91240 0.90788 0.74622 0.80250 0.80915 0.82646 0.92530 0.92411 0.98342 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.35 11.22 21.65 0.24 -54.11 16 2 C -0.05 -2.74 4.90 84.86 0.42 -2.33 16 3 Si 0.96 43.81 29.59 68.60 2.03 45.84 16 4 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.26 -13.72 9.58 84.03 0.81 -12.91 16 8 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 9 N -0.61 -28.56 2.99 -699.09 -2.09 -30.65 16 10 C 0.14 5.12 6.51 86.36 0.56 5.69 16 11 C -0.12 -3.19 5.55 30.67 0.17 -3.02 16 12 C 0.16 4.22 2.11 45.02 0.10 4.32 16 13 N -0.71 -13.58 5.25 -318.47 -1.67 -15.26 16 14 C 0.21 4.29 6.66 38.30 0.26 4.55 16 15 C -0.15 -2.34 10.05 22.59 0.23 -2.11 16 16 C -0.06 -1.09 9.42 22.34 0.21 -0.88 16 17 C -0.06 -1.55 6.30 42.57 0.27 -1.29 16 18 C 0.53 12.55 3.43 71.24 0.24 12.80 16 19 F -0.18 -4.28 17.30 44.97 0.78 -3.50 16 20 F -0.18 -4.99 17.03 44.97 0.77 -4.23 16 21 F -0.17 -3.42 16.43 44.97 0.74 -2.69 16 22 N -0.43 -12.46 9.95 -183.34 -1.82 -14.29 16 23 C 0.01 0.35 10.03 84.85 0.85 1.20 16 24 C -0.14 -4.58 5.59 30.67 0.17 -4.41 16 25 C 0.18 8.11 5.31 86.36 0.46 8.57 16 26 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 2.19 7.94 -2.39 -0.02 2.17 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.06 6.52 -2.39 -0.02 2.05 16 32 H 0.42 5.85 8.63 -92.71 -0.80 5.05 16 33 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.17 1.85 7.59 -2.91 -0.02 1.82 16 35 H 0.16 4.32 6.15 -2.91 -0.02 4.30 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.06 1.88 7.73 -2.39 -0.02 1.86 16 38 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 39 H 0.05 2.74 6.06 -2.39 -0.01 2.73 16 Total: -1.00 -64.47 332.14 4.00 -60.47 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.30 Total: 8.23 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 4.74 Total: 10.18 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -5.35 Total: -114.30 kcal Atomic # 9 Polarization: -12.70 SS G_CDS: 2.28 Total: -10.42 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -64.47 4.00 -60.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892403323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.462 kcal (2) G-P(sol) polarization free energy of solvation -64.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds