Wall clock time and date at job start Tue Mar 31 2020 10:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00153 * 2 1 4 4 H 1.48497 * 109.47226 * 239.99932 * 3 2 1 5 5 H 1.48503 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47217 * 119.99481 * 3 2 1 7 7 C 1.38815 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99830 * 163.08207 * 7 2 1 9 9 N 1.36934 * 120.00124 * 343.08602 * 7 2 1 10 10 C 1.46931 * 120.63108 * 331.83935 * 9 7 2 11 11 C 1.53186 * 108.77505 * 233.59054 * 10 9 7 12 12 C 1.53041 * 109.31463 * 305.36191 * 11 10 9 13 13 O 1.45202 * 109.45976 * 181.38720 * 12 11 10 14 14 C 1.34786 * 116.99625 * 150.00391 * 13 12 11 15 15 O 1.21531 * 120.00581 * 0.02562 * 14 13 12 16 16 C 1.47234 * 119.99530 * 179.97438 * 14 13 12 17 17 C 1.39317 * 120.84420 * 0.02562 * 16 14 13 18 18 N 1.31892 * 120.96080 * 179.97438 * 17 16 14 19 19 C 1.31937 * 122.72635 * 359.97438 * 18 17 16 20 20 C 1.38688 * 120.81004 * 0.02562 * 19 18 17 21 21 N 1.37754 * 134.30363 * 180.02562 * 20 19 18 22 22 H 0.97000 * 125.55823 * 0.02562 * 21 20 19 23 23 C 1.36535 * 108.88098 * 180.02562 * 21 20 19 24 24 C 1.34672 * 109.65846 * 359.97438 * 23 21 20 25 25 C 1.40988 * 118.84463 * 0.02562 * 20 19 18 26 26 C 1.53043 * 109.53466 * 61.36732 * 12 11 10 27 27 C 1.46922 * 120.63208 * 151.82199 * 9 7 2 28 28 H 0.97004 * 120.00447 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58692 * 113.80236 * 10 9 7 30 30 H 1.09001 * 109.70093 * 353.44732 * 10 9 7 31 31 H 1.09008 * 109.49738 * 185.41586 * 11 10 9 32 32 H 1.08999 * 109.50203 * 65.32006 * 11 10 9 33 33 H 1.08996 * 109.46315 * 301.36055 * 12 11 10 34 34 H 1.08000 * 119.52280 * 0.24977 * 17 16 14 35 35 H 1.08004 * 119.59476 * 180.02562 * 19 18 17 36 36 H 1.08000 * 125.17514 * 179.97438 * 23 21 20 37 37 H 1.07999 * 126.09024 * 180.02562 * 24 23 21 38 38 H 1.09003 * 109.49891 * 58.59191 * 26 12 11 39 39 H 1.09007 * 109.49649 * 178.68061 * 26 12 11 40 40 H 1.09004 * 109.59025 * 246.19629 * 27 9 7 41 41 H 1.09001 * 109.58733 * 6.48259 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2225 -0.2716 9 7 1.3700 -2.3623 0.3461 10 6 0.2259 -2.3400 1.2677 11 6 0.4971 -3.3191 2.4141 12 6 0.8117 -4.7008 1.8361 13 8 1.0371 -5.6392 2.9209 14 6 0.7168 -6.9282 2.6915 15 8 0.2619 -7.2589 1.6141 16 6 0.9189 -7.9358 3.7458 17 6 1.4396 -7.5763 4.9870 18 7 1.6212 -8.4769 5.9333 19 6 1.3269 -9.7526 5.7698 20 6 0.8033 -10.2128 4.5708 21 7 0.4055 -11.4468 4.1052 22 1 0.4363 -12.2760 4.6076 23 6 -0.0391 -11.3122 2.8213 24 6 0.0587 -10.0241 2.4406 25 6 0.5896 -9.2927 3.5242 26 6 2.0672 -4.6173 0.9649 27 6 1.8137 -3.6529 -0.1980 28 1 -0.4851 0.8400 0.0004 29 1 -0.6772 -2.6405 0.7364 30 1 0.0965 -1.3347 1.6686 31 1 -0.3836 -3.3841 3.0532 32 1 1.3468 -2.9676 2.9995 33 1 -0.0283 -5.0409 1.2304 34 1 1.6941 -6.5444 5.1787 35 1 1.4959 -10.4471 6.5795 36 1 -0.4124 -12.1165 2.2046 37 1 -0.2199 -9.6224 1.4776 38 1 2.9021 -4.2537 1.5639 39 1 2.3041 -5.6063 0.5724 40 1 1.0402 -4.0606 -0.8488 41 1 2.7332 -3.5131 -0.7665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892863788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:03 Heat of formation + Delta-G solvation = 8.205103 kcal Electronic energy + Delta-G solvation = -25606.255282 eV Core-core repulsion = 21873.462497 eV Total energy + Delta-G solvation = -3732.792785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10324 -40.10229 -38.33384 -37.35828 -35.72608 -33.01935 -32.57875 -30.53267 -30.28543 -30.02805 -29.49864 -25.62559 -24.65471 -22.91503 -22.54144 -22.14134 -21.35690 -20.74022 -19.31597 -18.56057 -17.80215 -17.00452 -16.89030 -16.03236 -15.74326 -15.34040 -15.05034 -15.03482 -14.78134 -14.01179 -13.55161 -13.54973 -13.28341 -13.11728 -12.93037 -12.76492 -12.70307 -12.43540 -12.26427 -11.50199 -11.20041 -11.03906 -10.71171 -10.70775 -10.67097 -10.45493 -10.31433 -10.16895 -9.92051 -9.75087 -9.61169 -9.40465 -8.98861 -8.47167 -8.31008 -6.70757 -5.79845 -3.22466 0.14510 1.12728 2.32696 2.57377 2.67469 2.88909 3.40100 3.45586 3.47171 3.70631 4.14599 4.39460 4.44232 4.50007 4.55238 4.84414 4.93381 5.05594 5.29895 5.38969 5.44002 5.45308 5.52407 5.60343 5.78124 5.88089 6.03774 6.14366 6.22588 6.26641 6.44215 6.46077 6.51277 6.54759 6.62469 6.75782 6.88459 6.96855 6.99299 7.31305 7.60565 7.66327 7.79439 8.01647 8.43921 9.19781 9.82580 10.39418 11.29388 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033000 B = 0.002670 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.278402 B =10483.147216 C =10903.814969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.136 4.136 12 C 0.101 3.899 13 O -0.352 6.352 14 C 0.510 3.490 15 O -0.502 6.502 16 C -0.134 4.134 17 C 0.128 3.872 18 N -0.478 5.478 19 C 0.146 3.854 20 C 0.013 3.987 21 N -0.577 5.577 22 H 0.422 0.578 23 C 0.072 3.928 24 C -0.196 4.196 25 C -0.019 4.019 26 C -0.146 4.146 27 C 0.149 3.851 28 H 0.255 0.745 29 H 0.022 0.978 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.174 0.826 35 H 0.158 0.842 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.021 0.979 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 -24.110 10.336 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.175 4.175 12 C 0.047 3.953 13 O -0.269 6.269 14 C 0.354 3.646 15 O -0.391 6.391 16 C -0.138 4.138 17 C -0.024 4.024 18 N -0.187 5.187 19 C -0.020 4.020 20 C -0.096 4.096 21 N -0.180 5.180 22 H 0.260 0.740 23 C -0.058 4.058 24 C -0.221 4.221 25 C -0.030 4.030 26 C -0.186 4.186 27 C 0.023 3.977 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.191 0.809 35 H 0.176 0.824 36 H 0.197 0.803 37 H 0.178 0.822 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.150 -23.764 10.808 26.106 hybrid contribution -0.001 0.097 -0.746 0.752 sum 0.149 -23.667 10.062 25.718 Atomic orbital electron populations 1.70008 1.05284 1.25758 1.53744 1.25063 0.95310 0.98496 1.00701 0.86339 0.78900 0.83180 0.78174 1.20865 1.21618 1.20943 1.19154 0.92617 0.84712 1.41923 0.91572 1.44110 1.35788 1.01694 1.49926 1.20805 0.88895 0.97943 0.87534 1.22469 1.01324 0.92668 1.01044 1.22963 0.99032 0.87201 0.86118 1.86606 1.77138 1.17400 1.45793 1.20673 0.74909 0.82605 0.86422 1.90794 1.41491 1.81147 1.25715 1.19659 1.07469 0.91156 0.95469 1.22984 0.92649 0.99625 0.87112 1.67712 1.17595 1.00995 1.32354 1.22035 0.93996 0.92761 0.93200 1.19293 1.06680 0.86256 0.97412 1.41756 1.54933 1.08168 1.13102 0.73957 1.22241 0.99814 0.98816 0.84974 1.20938 1.08438 0.91948 1.00738 1.18167 0.98905 0.91377 0.94541 1.22471 0.97204 1.00005 0.98898 1.20857 0.98183 0.86416 0.92283 0.93470 0.96000 0.88563 0.92325 0.91371 0.90248 0.80905 0.82440 0.80266 0.82171 0.91313 0.92645 0.96060 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -15.04 2.99 -172.32 -0.52 -15.56 16 10 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 11 C -0.14 -2.69 5.74 -26.61 -0.15 -2.84 16 12 C 0.10 1.91 2.42 -26.69 -0.06 1.84 16 13 O -0.35 -6.09 9.17 -40.73 -0.37 -6.47 16 14 C 0.51 8.53 7.87 34.39 0.27 8.80 16 15 O -0.50 -9.33 14.48 -19.29 -0.28 -9.61 16 16 C -0.13 -1.90 5.91 -104.65 -0.62 -2.52 16 17 C 0.13 1.63 10.78 -17.12 -0.18 1.45 16 18 N -0.48 -5.64 10.30 -12.83 -0.13 -5.77 16 19 C 0.15 1.34 11.21 -17.34 -0.19 1.15 16 20 C 0.01 0.13 7.31 -84.00 -0.61 -0.49 16 21 N -0.58 -3.52 6.13 -10.63 -0.07 -3.59 16 22 H 0.42 0.94 8.96 -40.82 -0.37 0.58 16 23 C 0.07 0.49 11.84 -16.72 -0.20 0.29 16 24 C -0.20 -2.17 10.09 -39.76 -0.40 -2.57 16 25 C -0.02 -0.24 6.04 -106.58 -0.64 -0.88 16 26 C -0.15 -2.80 5.72 -26.61 -0.15 -2.95 16 27 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 2.54 6.07 -51.93 -0.31 2.23 16 31 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.60 7.16 -51.93 -0.37 1.22 16 34 H 0.17 2.05 7.62 -52.49 -0.40 1.65 16 35 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.16 1.93 7.19 -52.49 -0.38 1.55 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 1.28 7.93 -51.93 -0.41 0.86 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -33.41 342.51 -9.01 -42.42 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.17 Total: 0.79 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.23 Total: 1.53 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.09 Total: -50.47 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.65 Total: -16.08 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.41 -9.01 -42.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892863788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.629 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds