Wall clock time and date at job start Tue Mar 31 2020 10:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00153 * 2 1 4 4 H 1.48497 * 109.47226 * 239.99932 * 3 2 1 5 5 H 1.48503 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47217 * 119.99481 * 3 2 1 7 7 C 1.38815 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99830 * 163.08207 * 7 2 1 9 9 N 1.36934 * 120.00124 * 343.08602 * 7 2 1 10 10 C 1.46931 * 120.63108 * 331.83935 * 9 7 2 11 11 C 1.53186 * 108.77505 * 233.59054 * 10 9 7 12 12 C 1.53041 * 109.31463 * 305.36191 * 11 10 9 13 13 O 1.45202 * 109.45976 * 181.38720 * 12 11 10 14 14 C 1.34786 * 116.99625 * 150.00391 * 13 12 11 15 15 O 1.21531 * 120.00581 * 0.02562 * 14 13 12 16 16 C 1.47234 * 119.99530 * 179.97438 * 14 13 12 17 17 C 1.39317 * 120.84420 * 0.02562 * 16 14 13 18 18 N 1.31892 * 120.96080 * 179.97438 * 17 16 14 19 19 C 1.31937 * 122.72635 * 359.97438 * 18 17 16 20 20 C 1.38688 * 120.81004 * 0.02562 * 19 18 17 21 21 N 1.37754 * 134.30363 * 180.02562 * 20 19 18 22 22 H 0.97000 * 125.55823 * 0.02562 * 21 20 19 23 23 C 1.36535 * 108.88098 * 180.02562 * 21 20 19 24 24 C 1.34672 * 109.65846 * 359.97438 * 23 21 20 25 25 C 1.40988 * 118.84463 * 0.02562 * 20 19 18 26 26 C 1.53043 * 109.53466 * 61.36732 * 12 11 10 27 27 C 1.46922 * 120.63208 * 151.82199 * 9 7 2 28 28 H 0.97004 * 120.00447 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58692 * 113.80236 * 10 9 7 30 30 H 1.09001 * 109.70093 * 353.44732 * 10 9 7 31 31 H 1.09008 * 109.49738 * 185.41586 * 11 10 9 32 32 H 1.08999 * 109.50203 * 65.32006 * 11 10 9 33 33 H 1.08996 * 109.46315 * 301.36055 * 12 11 10 34 34 H 1.08000 * 119.52280 * 0.24977 * 17 16 14 35 35 H 1.08004 * 119.59476 * 180.02562 * 19 18 17 36 36 H 1.08000 * 125.17514 * 179.97438 * 23 21 20 37 37 H 1.07999 * 126.09024 * 180.02562 * 24 23 21 38 38 H 1.09003 * 109.49891 * 58.59191 * 26 12 11 39 39 H 1.09007 * 109.49649 * 178.68061 * 26 12 11 40 40 H 1.09004 * 109.59025 * 246.19629 * 27 9 7 41 41 H 1.09001 * 109.58733 * 6.48259 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2225 -0.2716 9 7 1.3700 -2.3623 0.3461 10 6 0.2259 -2.3400 1.2677 11 6 0.4971 -3.3191 2.4141 12 6 0.8117 -4.7008 1.8361 13 8 1.0371 -5.6392 2.9209 14 6 0.7168 -6.9282 2.6915 15 8 0.2619 -7.2589 1.6141 16 6 0.9189 -7.9358 3.7458 17 6 1.4396 -7.5763 4.9870 18 7 1.6212 -8.4769 5.9333 19 6 1.3269 -9.7526 5.7698 20 6 0.8033 -10.2128 4.5708 21 7 0.4055 -11.4468 4.1052 22 1 0.4363 -12.2760 4.6076 23 6 -0.0391 -11.3122 2.8213 24 6 0.0587 -10.0241 2.4406 25 6 0.5896 -9.2927 3.5242 26 6 2.0672 -4.6173 0.9649 27 6 1.8137 -3.6529 -0.1980 28 1 -0.4851 0.8400 0.0004 29 1 -0.6772 -2.6405 0.7364 30 1 0.0965 -1.3347 1.6686 31 1 -0.3836 -3.3841 3.0532 32 1 1.3468 -2.9676 2.9995 33 1 -0.0283 -5.0409 1.2304 34 1 1.6941 -6.5444 5.1787 35 1 1.4959 -10.4471 6.5795 36 1 -0.4124 -12.1165 2.2046 37 1 -0.2199 -9.6224 1.4776 38 1 2.9021 -4.2537 1.5639 39 1 2.3041 -5.6063 0.5724 40 1 1.0402 -4.0606 -0.8488 41 1 2.7332 -3.5131 -0.7665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892863788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:02 Heat of formation + Delta-G solvation = -12.629178 kcal Electronic energy + Delta-G solvation = -25607.158725 eV Core-core repulsion = 21873.462497 eV Total energy + Delta-G solvation = -3733.696227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.86147 -41.43711 -39.27064 -38.89946 -37.26205 -34.62647 -33.75364 -32.18242 -31.52598 -31.09014 -30.77251 -27.28319 -25.93511 -24.16037 -23.86231 -23.62926 -22.52136 -21.69520 -21.03765 -19.48043 -18.93388 -18.81470 -17.83146 -17.35597 -17.10626 -16.74366 -16.17592 -15.88015 -15.73150 -15.69772 -15.41972 -14.95821 -14.65577 -14.46413 -14.26579 -14.16887 -13.77737 -13.48311 -13.29659 -13.09569 -13.05001 -12.69797 -12.58383 -12.49821 -12.17072 -11.99002 -11.91769 -11.77558 -11.44839 -11.31652 -11.07784 -10.69915 -10.55528 -9.70051 -9.09287 -8.76324 -7.90237 -5.36542 -0.72954 0.32334 1.38466 1.48638 1.51031 1.57050 1.58804 1.74031 2.02604 2.51190 2.79737 3.25144 3.31697 3.55750 3.59617 3.72113 3.79203 3.82376 3.84562 4.04417 4.06670 4.15620 4.35462 4.40856 4.55523 4.65879 4.69583 4.73043 4.83881 4.89239 4.95657 5.03479 5.12861 5.20337 5.33852 5.37824 5.42263 5.54735 5.62245 5.67747 5.75901 6.36128 6.54598 6.67274 6.86029 7.10904 7.79136 8.32743 9.17537 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033000 B = 0.002670 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.278402 B =10483.147216 C =10903.814969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.268 4.268 8 H 0.070 0.930 9 N -0.610 5.610 10 C 0.182 3.818 11 C -0.121 4.121 12 C 0.108 3.892 13 O -0.349 6.349 14 C 0.509 3.491 15 O -0.530 6.530 16 C -0.171 4.171 17 C 0.133 3.867 18 N -0.501 5.501 19 C 0.167 3.833 20 C 0.006 3.994 21 N -0.550 5.550 22 H 0.446 0.554 23 C 0.119 3.881 24 C -0.250 4.250 25 C -0.044 4.044 26 C -0.132 4.132 27 C 0.148 3.852 28 H 0.252 0.748 29 H 0.001 0.999 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.173 0.827 35 H 0.204 0.796 36 H 0.229 0.771 37 H 0.138 0.862 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.014 0.986 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.928 -27.219 12.072 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.799 3.201 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.398 4.398 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.056 3.944 11 C -0.161 4.161 12 C 0.053 3.947 13 O -0.266 6.266 14 C 0.355 3.645 15 O -0.421 6.421 16 C -0.175 4.175 17 C -0.018 4.018 18 N -0.210 5.210 19 C 0.002 3.998 20 C -0.104 4.104 21 N -0.154 5.154 22 H 0.289 0.711 23 C -0.014 4.014 24 C -0.274 4.274 25 C -0.055 4.055 26 C -0.172 4.172 27 C 0.022 3.978 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.190 0.810 35 H 0.220 0.780 36 H 0.245 0.755 37 H 0.156 0.844 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.032 0.968 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.055 -26.928 12.583 29.742 hybrid contribution -0.319 0.804 -1.275 1.540 sum 0.736 -26.125 11.308 28.477 Atomic orbital electron populations 1.70165 1.06729 1.26209 1.54995 1.25850 0.96086 1.01648 1.00788 0.85286 0.77541 0.78863 0.78413 1.20087 1.21927 1.20230 1.19500 0.92995 0.85763 1.41559 0.91258 1.44364 1.35916 1.02400 1.50665 1.20578 0.87992 0.97541 0.88335 1.22193 1.02229 0.92178 0.99459 1.22640 0.98448 0.87208 0.86380 1.86596 1.77398 1.17894 1.44685 1.21239 0.73975 0.82347 0.86904 1.90771 1.43040 1.81288 1.27006 1.19564 1.11181 0.91356 0.95381 1.22994 0.91859 1.00096 0.86850 1.67798 1.19167 1.02092 1.31994 1.22753 0.90743 0.92381 0.93881 1.19320 1.07276 0.86982 0.96868 1.41792 1.52734 1.08036 1.12832 0.71083 1.22843 0.95586 0.98173 0.84784 1.20948 1.12038 0.94064 1.00383 1.18507 0.99281 0.91423 0.96296 1.22277 0.97258 0.99740 0.97895 1.20941 0.98032 0.85561 0.93256 0.93859 0.98135 0.91211 0.90488 0.91165 0.91698 0.80998 0.77983 0.75481 0.84405 0.91011 0.91446 0.96786 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.77 11.19 21.65 0.24 -55.53 16 2 C -0.05 -2.71 4.92 84.86 0.42 -2.30 16 3 Si 0.97 45.09 29.59 68.60 2.03 47.12 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.27 -15.01 9.58 84.03 0.81 -14.20 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 9 N -0.61 -31.78 2.99 -699.10 -2.09 -33.87 16 10 C 0.18 9.06 5.30 86.36 0.46 9.51 16 11 C -0.12 -4.91 5.74 30.67 0.18 -4.73 16 12 C 0.11 4.18 2.42 30.62 0.07 4.26 16 13 O -0.35 -12.34 9.17 -56.98 -0.52 -12.86 16 14 C 0.51 17.70 7.87 70.19 0.55 18.25 16 15 O -0.53 -20.70 14.48 19.73 0.29 -20.42 16 16 C -0.17 -4.94 5.91 -19.88 -0.12 -5.06 16 17 C 0.13 3.39 10.78 84.94 0.92 4.30 16 18 N -0.50 -10.99 10.30 -194.51 -2.00 -12.99 16 19 C 0.17 2.53 11.21 84.78 0.95 3.48 16 20 C 0.01 0.10 7.31 38.99 0.29 0.38 16 21 N -0.55 -4.27 6.13 -187.55 -1.15 -5.42 16 22 H 0.45 -0.55 8.96 -92.71 -0.83 -1.38 16 23 C 0.12 1.18 11.84 83.14 0.98 2.17 16 24 C -0.25 -5.35 10.09 22.15 0.22 -5.13 16 25 C -0.04 -1.08 6.04 -21.13 -0.13 -1.21 16 26 C -0.13 -5.11 5.72 30.67 0.18 -4.94 16 27 C 0.15 6.57 6.52 86.36 0.56 7.13 16 28 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 31 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 32 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.06 2.72 7.16 -2.39 -0.02 2.70 16 34 H 0.17 4.15 7.62 -2.91 -0.02 4.13 16 35 H 0.20 1.11 8.06 -2.91 -0.02 1.08 16 36 H 0.23 0.00 8.06 -2.91 -0.02 -0.03 16 37 H 0.14 3.51 7.19 -2.91 -0.02 3.49 16 38 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 39 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.07 2.85 7.93 -2.39 -0.02 2.83 16 Total: -1.00 -76.21 342.51 3.36 -72.84 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.24 Total: 9.20 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.34 Total: 11.92 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -5.00 Total: -107.81 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.24 Total: -33.28 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.21 3.36 -72.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892863788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.211 kcal (2) G-P(sol) polarization free energy of solvation -76.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds