Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39728 * 125.77649 * 2 1 4 4 C 1.36151 * 107.85786 * 179.97438 * 3 2 1 5 5 N 1.39379 * 126.26082 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00255 * 0.03823 * 5 4 3 7 7 O 1.21570 * 120.00090 * 0.02562 * 6 5 4 8 8 C 1.47815 * 119.99970 * 180.02562 * 6 5 4 9 9 C 1.39538 * 120.12330 * 353.72631 * 8 6 5 10 10 C 1.38452 * 119.79784 * 179.74791 * 9 8 6 11 11 O 1.35902 * 119.98633 * 180.25187 * 10 9 8 12 12 C 1.38856 * 120.02681 * 0.52469 * 10 9 8 13 13 C 1.38248 * 120.24631 * 359.72981 * 12 10 9 14 14 C 1.38008 * 120.20350 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.01448 * 179.97438 * 14 13 12 16 16 N 1.35803 * 107.47109 * 0.02562 * 4 3 2 17 17 C 1.46509 * 126.09161 * 180.02562 * 16 4 3 18 18 C 1.50699 * 109.47093 * 270.02328 * 17 16 4 19 19 H 1.07999 * 119.99626 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00056 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00160 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00093 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47059 * 60.00055 * 22 20 18 24 24 H 1.48500 * 109.46989 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47055 * 300.00009 * 22 20 18 26 26 N 1.30835 * 125.77863 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47101 * 270.02648 * 1 2 3 28 28 H 1.09003 * 109.46754 * 30.03103 * 1 2 3 29 29 H 1.09004 * 109.46827 * 150.02518 * 1 2 3 30 30 H 1.07999 * 126.06873 * 0.02562 * 3 2 1 31 31 H 0.97000 * 119.99673 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.10138 * 359.97302 * 9 8 6 33 33 H 0.96694 * 114.00431 * 270.27471 * 11 10 9 34 34 H 1.08000 * 119.88000 * 179.70078 * 12 10 9 35 35 H 1.07995 * 119.89925 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.46836 * 263.41011 * 15 14 13 37 37 H 1.09000 * 109.47690 * 23.40901 * 15 14 13 38 38 H 1.09001 * 109.47304 * 143.41562 * 15 14 13 39 39 H 1.09000 * 109.46895 * 30.02508 * 17 16 4 40 40 H 1.09001 * 109.46898 * 150.02169 * 17 16 4 41 41 H 0.97003 * 120.00683 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7147 0.0006 5 7 4.7496 1.5304 0.0003 6 6 4.6129 2.8712 0.0001 7 8 3.5039 3.3693 0.0007 8 6 5.8116 3.7363 -0.0008 9 6 7.0816 3.1733 0.1304 10 6 8.2000 3.9894 0.1235 11 8 9.4390 3.4447 0.2459 12 6 8.0559 5.3646 -0.0028 13 6 6.7980 5.9245 -0.1276 14 6 5.6767 5.1198 -0.1269 15 6 4.3076 5.7347 -0.2626 16 7 3.6088 -0.6433 0.0004 17 6 4.7859 -1.5155 0.0013 18 6 5.1912 -1.8139 -1.4191 19 1 4.6280 -1.3960 -2.2404 20 6 6.2809 -2.6204 -1.6702 21 7 6.9664 -3.1297 -0.6701 22 14 6.7828 -2.9908 -3.4310 23 1 7.1070 -1.7218 -4.1307 24 1 7.9760 -3.8749 -3.4299 25 1 5.6642 -3.6708 -4.1319 26 7 2.2720 -1.0614 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8903 -0.5135 30 1 1.9874 2.1598 0.0004 31 1 5.6344 1.1331 0.0004 32 1 7.1920 2.1039 0.2334 33 1 9.7439 3.3620 1.1598 34 1 8.9296 5.9994 -0.0031 35 1 6.6924 6.9948 -0.2250 36 1 3.8671 5.8624 0.7262 37 1 4.3919 6.7055 -0.7510 38 1 3.6733 5.0807 -0.8611 39 1 5.6071 -1.0170 0.5164 40 1 4.5473 -2.4471 0.5145 41 1 7.7333 -3.6968 -0.8466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900326829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = 25.423812 kcal Electronic energy + Delta-G solvation = -25771.889755 eV Core-core repulsion = 22039.843629 eV Total energy + Delta-G solvation = -3732.046126 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.05366 -40.14827 -38.82643 -36.86428 -34.92314 -33.82050 -32.18498 -31.72468 -31.53912 -29.13297 -28.21773 -26.57259 -26.01568 -24.22918 -22.92266 -22.13558 -21.23755 -19.80093 -19.49922 -18.30184 -16.94006 -16.79285 -16.55676 -15.94371 -15.63738 -15.29564 -15.24656 -14.82483 -14.30632 -14.21875 -13.91452 -13.78753 -13.28161 -12.89713 -12.78169 -12.70709 -12.51815 -12.10553 -11.93935 -11.90913 -11.78553 -11.68355 -11.53997 -11.09921 -10.93854 -10.86341 -10.41263 -10.32624 -9.83726 -9.82966 -9.39224 -9.28524 -8.71620 -8.68357 -7.91596 -7.45332 -6.33417 -4.42063 0.59486 1.01837 2.37525 2.76086 3.03520 3.19671 3.23704 3.28188 3.45188 3.70381 3.75611 3.97806 4.25042 4.50463 4.57117 4.75162 4.93449 4.99998 5.12701 5.34813 5.40429 5.54502 5.58237 5.66246 5.75368 5.88518 6.02253 6.07014 6.10600 6.14671 6.17547 6.28450 6.35883 6.41772 6.56996 6.66017 6.82001 7.02901 7.44645 7.49772 7.56487 7.61263 7.79131 7.88347 8.25645 8.60656 8.69931 9.25802 10.73674 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009118 B = 0.005170 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.078456 B = 5414.564651 C = 7881.453466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.291 4.291 4 C 0.300 3.700 5 N -0.634 5.634 6 C 0.564 3.436 7 O -0.504 6.504 8 C -0.117 4.117 9 C -0.105 4.105 10 C 0.093 3.907 11 O -0.494 6.494 12 C -0.115 4.115 13 C -0.117 4.117 14 C -0.028 4.028 15 C -0.122 4.122 16 N -0.346 5.346 17 C 0.257 3.743 18 C -0.542 4.542 19 H 0.064 0.936 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.273 1.273 26 N -0.283 5.283 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.163 0.837 31 H 0.415 0.585 32 H 0.137 0.863 33 H 0.391 0.609 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 17.345 4.187 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.323 4.323 4 C 0.078 3.922 5 N -0.281 5.281 6 C 0.353 3.647 7 O -0.380 6.380 8 C -0.121 4.121 9 C -0.124 4.124 10 C 0.048 3.952 11 O -0.304 6.304 12 C -0.134 4.134 13 C -0.135 4.135 14 C -0.029 4.029 15 C -0.178 4.178 16 N -0.132 5.132 17 C 0.140 3.860 18 C -0.580 4.580 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.732 3.268 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.198 1.198 26 N -0.108 5.108 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.180 0.820 31 H 0.253 0.747 32 H 0.155 0.845 33 H 0.247 0.753 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.291 16.194 3.631 16.598 hybrid contribution 1.330 0.145 -0.440 1.409 sum 1.621 16.339 3.190 16.726 Atomic orbital electron populations 1.20022 0.87574 1.02455 1.02030 1.22020 0.96526 0.91009 1.01972 1.21267 0.88972 1.00467 1.21583 1.18010 0.87869 0.83326 1.03043 1.42659 1.08445 1.05471 1.71477 1.18047 0.89070 0.80823 0.76796 1.90658 1.26114 1.73233 1.48016 1.19473 0.92092 0.93599 1.06894 1.21723 0.91257 1.00866 0.98548 1.18256 0.84390 0.90614 1.01914 1.84882 1.29577 1.83565 1.32399 1.21621 0.98222 0.94209 0.99307 1.20924 0.91081 1.00047 1.01433 1.20062 0.96899 0.91404 0.94523 1.21115 0.92819 1.00319 1.03574 1.49509 1.06479 1.02036 1.55133 1.19615 0.77796 0.89698 0.98918 1.21301 1.13397 1.32009 0.91317 0.91740 1.24921 0.95641 0.94820 0.98187 1.69901 1.19176 1.32554 1.31117 0.86418 0.78114 0.78561 0.83682 1.19932 1.20845 1.19838 1.77338 0.86151 1.21843 1.25474 0.91381 0.91125 0.91510 0.82015 0.74721 0.84524 0.75307 0.84930 0.84794 0.90447 0.92338 0.88332 0.93983 0.92485 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.01 0.38 -0.54 16 2 C 0.05 1.00 7.20 -82.46 -0.59 0.41 16 3 C -0.29 -5.94 9.58 -39.78 -0.38 -6.32 16 4 C 0.30 6.39 7.68 -152.75 -1.17 5.22 16 5 N -0.63 -11.51 5.36 -12.21 -0.07 -11.57 16 6 C 0.56 9.30 7.67 -12.34 -0.09 9.20 16 7 O -0.50 -8.86 10.46 5.30 0.06 -8.80 16 8 C -0.12 -1.61 5.87 -104.99 -0.62 -2.22 16 9 C -0.10 -1.34 9.46 -39.02 -0.37 -1.71 16 10 C 0.09 1.05 6.70 -39.27 -0.26 0.79 16 11 O -0.49 -5.22 13.50 -19.43 -0.26 -5.48 16 12 C -0.11 -1.10 9.98 -39.35 -0.39 -1.50 16 13 C -0.12 -1.12 9.65 -39.66 -0.38 -1.50 16 14 C -0.03 -0.33 5.91 -104.21 -0.62 -0.95 16 15 C -0.12 -1.35 8.73 36.01 0.31 -1.03 16 16 N -0.35 -8.18 3.62 -61.44 -0.22 -8.40 16 17 C 0.26 6.49 6.02 -5.19 -0.03 6.46 16 18 C -0.54 -14.71 9.39 -34.44 -0.32 -15.04 16 19 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 20 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 21 N -0.89 -24.44 13.29 55.43 0.74 -23.71 16 22 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 N -0.28 -6.62 12.56 33.64 0.42 -6.20 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.16 3.15 5.83 -52.49 -0.31 2.84 16 31 H 0.41 7.13 6.07 -40.82 -0.25 6.89 16 32 H 0.14 1.74 6.45 -52.49 -0.34 1.40 16 33 H 0.39 2.19 9.06 45.56 0.41 2.61 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 0.92 8.05 -52.49 -0.42 0.49 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 38 H 0.10 1.31 5.84 -51.93 -0.30 1.01 16 39 H 0.04 1.02 7.52 -51.93 -0.39 0.63 16 40 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -32.38 351.14 -7.80 -40.19 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.09 Total: 9.70 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -4.64 Total: -7.00 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.87 Total: -49.88 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.21 Total: -14.28 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.38 -7.80 -40.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900326829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.611 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds