Wall clock time and date at job start Tue Mar 31 2020 11:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39728 * 125.77649 * 2 1 4 4 C 1.36151 * 107.85786 * 179.97438 * 3 2 1 5 5 N 1.39379 * 126.26082 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00255 * 0.03823 * 5 4 3 7 7 O 1.21570 * 120.00090 * 0.02562 * 6 5 4 8 8 C 1.47815 * 119.99970 * 180.02562 * 6 5 4 9 9 C 1.39538 * 120.12330 * 353.72631 * 8 6 5 10 10 C 1.38452 * 119.79784 * 179.74791 * 9 8 6 11 11 O 1.35902 * 119.98633 * 180.25187 * 10 9 8 12 12 C 1.38856 * 120.02681 * 0.52469 * 10 9 8 13 13 C 1.38248 * 120.24631 * 359.72981 * 12 10 9 14 14 C 1.38008 * 120.20350 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.01448 * 179.97438 * 14 13 12 16 16 N 1.35803 * 107.47109 * 0.02562 * 4 3 2 17 17 C 1.46509 * 126.09161 * 180.02562 * 16 4 3 18 18 C 1.50699 * 109.47093 * 270.02328 * 17 16 4 19 19 H 1.07999 * 119.99626 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00056 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00160 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00093 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47059 * 60.00055 * 22 20 18 24 24 H 1.48500 * 109.46989 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47055 * 300.00009 * 22 20 18 26 26 N 1.30835 * 125.77863 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47101 * 270.02648 * 1 2 3 28 28 H 1.09003 * 109.46754 * 30.03103 * 1 2 3 29 29 H 1.09004 * 109.46827 * 150.02518 * 1 2 3 30 30 H 1.07999 * 126.06873 * 0.02562 * 3 2 1 31 31 H 0.97000 * 119.99673 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.10138 * 359.97302 * 9 8 6 33 33 H 0.96694 * 114.00431 * 270.27471 * 11 10 9 34 34 H 1.08000 * 119.88000 * 179.70078 * 12 10 9 35 35 H 1.07995 * 119.89925 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.46836 * 263.41011 * 15 14 13 37 37 H 1.09000 * 109.47690 * 23.40901 * 15 14 13 38 38 H 1.09001 * 109.47304 * 143.41562 * 15 14 13 39 39 H 1.09000 * 109.46895 * 30.02508 * 17 16 4 40 40 H 1.09001 * 109.46898 * 150.02169 * 17 16 4 41 41 H 0.97003 * 120.00683 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7147 0.0006 5 7 4.7496 1.5304 0.0003 6 6 4.6129 2.8712 0.0001 7 8 3.5039 3.3693 0.0007 8 6 5.8116 3.7363 -0.0008 9 6 7.0816 3.1733 0.1304 10 6 8.2000 3.9894 0.1235 11 8 9.4390 3.4447 0.2459 12 6 8.0559 5.3646 -0.0028 13 6 6.7980 5.9245 -0.1276 14 6 5.6767 5.1198 -0.1269 15 6 4.3076 5.7347 -0.2626 16 7 3.6088 -0.6433 0.0004 17 6 4.7859 -1.5155 0.0013 18 6 5.1912 -1.8139 -1.4191 19 1 4.6280 -1.3960 -2.2404 20 6 6.2809 -2.6204 -1.6702 21 7 6.9664 -3.1297 -0.6701 22 14 6.7828 -2.9908 -3.4310 23 1 7.1070 -1.7218 -4.1307 24 1 7.9760 -3.8749 -3.4299 25 1 5.6642 -3.6708 -4.1319 26 7 2.2720 -1.0614 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8903 -0.5135 30 1 1.9874 2.1598 0.0004 31 1 5.6344 1.1331 0.0004 32 1 7.1920 2.1039 0.2334 33 1 9.7439 3.3620 1.1598 34 1 8.9296 5.9994 -0.0031 35 1 6.6924 6.9948 -0.2250 36 1 3.8671 5.8624 0.7262 37 1 4.3919 6.7055 -0.7510 38 1 3.6733 5.0807 -0.8611 39 1 5.6071 -1.0170 0.5164 40 1 4.5473 -2.4471 0.5145 41 1 7.7333 -3.6968 -0.8466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900326829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:56 Heat of formation + Delta-G solvation = 4.152918 kcal Electronic energy + Delta-G solvation = -25772.812130 eV Core-core repulsion = 22039.843629 eV Total energy + Delta-G solvation = -3732.968501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.51785 -41.35604 -39.96350 -37.75364 -36.40440 -35.70742 -33.90476 -32.64950 -32.56993 -30.74056 -29.76614 -27.83813 -27.47626 -25.31596 -24.72780 -23.26806 -22.37013 -21.23774 -20.91455 -19.41632 -18.89760 -18.24080 -17.93712 -16.97585 -16.70811 -16.62176 -16.49759 -16.29783 -15.85592 -15.69194 -15.14593 -14.72519 -14.51514 -14.43140 -14.23528 -14.07988 -13.64331 -13.50255 -13.40061 -13.13569 -12.94272 -12.89406 -12.77806 -12.72623 -12.53714 -12.31603 -11.98574 -11.79523 -11.71436 -11.40284 -10.79630 -10.69884 -10.17091 -9.66544 -9.54626 -9.08226 -8.39880 -6.57535 -0.37703 0.17052 0.90410 1.27438 1.34086 1.35395 1.44650 1.68986 2.03179 2.13163 2.31536 2.61923 2.90384 3.11340 3.44020 3.70826 3.80859 3.91455 4.07952 4.20172 4.32246 4.53115 4.60484 4.67228 4.72465 4.76236 4.80850 4.85374 4.90508 4.91534 4.94670 5.06614 5.19063 5.22435 5.27830 5.33828 5.47227 5.51197 5.72894 5.73523 5.94788 6.08396 6.21842 6.52573 6.80990 6.86395 6.98874 7.14520 8.66452 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009118 B = 0.005170 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.078456 B = 5414.564651 C = 7881.453466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.059 3.941 3 C -0.300 4.300 4 C 0.295 3.705 5 N -0.638 5.638 6 C 0.563 3.437 7 O -0.517 6.517 8 C -0.137 4.137 9 C -0.121 4.121 10 C 0.089 3.911 11 O -0.507 6.507 12 C -0.103 4.103 13 C -0.105 4.105 14 C -0.035 4.035 15 C -0.118 4.118 16 N -0.370 5.370 17 C 0.274 3.726 18 C -0.558 4.558 19 H 0.046 0.954 20 C 0.029 3.971 21 N -0.912 5.912 22 Si 0.966 3.034 23 H -0.269 1.269 24 H -0.269 1.269 25 H -0.275 1.275 26 N -0.328 5.328 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.173 0.827 31 H 0.416 0.584 32 H 0.125 0.875 33 H 0.411 0.589 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.029 0.971 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 19.941 3.561 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.332 4.332 4 C 0.073 3.927 5 N -0.285 5.285 6 C 0.353 3.647 7 O -0.394 6.394 8 C -0.140 4.140 9 C -0.140 4.140 10 C 0.045 3.955 11 O -0.320 6.320 12 C -0.121 4.121 13 C -0.123 4.123 14 C -0.036 4.036 15 C -0.174 4.174 16 N -0.156 5.156 17 C 0.155 3.845 18 C -0.596 4.596 19 H 0.065 0.935 20 C -0.173 4.173 21 N -0.550 5.550 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.194 1.194 25 H -0.201 1.201 26 N -0.153 5.153 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.190 0.810 31 H 0.254 0.746 32 H 0.143 0.857 33 H 0.271 0.729 34 H 0.182 0.818 35 H 0.189 0.811 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.038 18.810 3.030 19.081 hybrid contribution 1.117 -0.544 -0.189 1.257 sum 2.155 18.267 2.842 18.612 Atomic orbital electron populations 1.20237 0.83718 1.03957 1.03944 1.22905 0.98808 0.89945 0.98982 1.21507 0.88713 1.01013 1.21925 1.18433 0.89384 0.82827 1.02032 1.42856 1.07690 1.05965 1.71979 1.18632 0.90093 0.80221 0.75740 1.90632 1.26998 1.73205 1.48566 1.19336 0.90959 0.94112 1.09603 1.21718 0.91800 1.00711 0.99800 1.18386 0.84070 0.91372 1.01699 1.84827 1.29028 1.83686 1.34466 1.21972 0.99452 0.93531 0.97135 1.21303 0.89985 1.01549 0.99435 1.20294 0.98204 0.90673 0.94477 1.21060 0.91954 1.01103 1.03331 1.49309 1.06303 1.02691 1.57270 1.19190 0.78612 0.88947 0.97758 1.21374 1.13872 1.32780 0.91619 0.93547 1.25663 0.95312 0.94263 1.02048 1.69973 1.19448 1.32683 1.32890 0.85481 0.77960 0.78618 0.78923 1.19361 1.19370 1.20067 1.77286 0.86325 1.23705 1.28002 0.89121 0.88653 0.90929 0.80980 0.74598 0.85694 0.72926 0.81806 0.81120 0.90500 0.89366 0.90996 0.93872 0.95290 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.44 71.24 0.74 -0.94 16 2 C 0.06 2.39 7.20 43.07 0.31 2.70 16 3 C -0.30 -12.43 9.58 22.14 0.21 -12.22 16 4 C 0.30 13.10 7.68 131.19 1.01 14.11 16 5 N -0.64 -24.30 5.36 -310.81 -1.67 -25.97 16 6 C 0.56 19.10 7.67 86.78 0.67 19.76 16 7 O -0.52 -18.50 10.46 -3.94 -0.04 -18.54 16 8 C -0.14 -3.75 5.87 -20.11 -0.12 -3.87 16 9 C -0.12 -3.11 9.46 22.63 0.21 -2.90 16 10 C 0.09 1.88 6.70 22.47 0.15 2.03 16 11 O -0.51 -9.87 13.50 -92.45 -1.25 -11.11 16 12 C -0.10 -1.61 9.98 22.42 0.22 -1.39 16 13 C -0.11 -1.62 9.65 22.22 0.21 -1.41 16 14 C -0.04 -0.78 5.91 -19.59 -0.12 -0.89 16 15 C -0.12 -2.42 8.73 71.24 0.62 -1.80 16 16 N -0.37 -18.35 3.62 -348.30 -1.26 -19.61 16 17 C 0.27 14.57 6.02 85.63 0.52 15.09 16 18 C -0.56 -31.48 9.39 25.60 0.24 -31.24 16 19 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 20 C 0.03 1.59 5.46 84.65 0.46 2.05 16 21 N -0.91 -50.92 13.29 21.44 0.28 -50.63 16 22 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 N -0.33 -15.89 12.56 -47.47 -0.60 -16.49 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.17 6.71 5.83 -2.91 -0.02 6.69 16 31 H 0.42 15.31 6.07 -92.71 -0.56 14.75 16 32 H 0.13 3.38 6.45 -2.91 -0.02 3.37 16 33 H 0.41 3.92 9.06 -74.06 -0.67 3.25 16 34 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.17 1.40 8.05 -2.91 -0.02 1.38 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.24 8.04 -2.39 -0.02 1.22 16 38 H 0.07 1.89 5.84 -2.39 -0.01 1.87 16 39 H 0.04 2.24 7.52 -2.39 -0.02 2.22 16 40 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -71.97 351.14 2.71 -69.26 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.14 Total: 28.67 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.35 Total: -0.90 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -3.24 Total: -112.70 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -1.29 Total: -29.66 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -71.97 2.71 -69.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900326829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.416 kcal (2) G-P(sol) polarization free energy of solvation -71.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds