Wall clock time and date at job start Tue Mar 31 2020 10:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48497 * 109.46755 * 270.00112 * 3 2 1 5 5 H 1.48501 * 109.47097 * 30.00081 * 3 2 1 6 6 H 1.48493 * 109.47239 * 150.00291 * 3 2 1 7 7 C 1.37880 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99744 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 269.99656 * 10 9 7 12 12 C 1.50699 * 109.47398 * 270.00022 * 11 10 9 13 13 C 1.34511 * 125.78993 * 89.71277 * 12 11 10 14 14 C 1.41379 * 106.84387 * 179.89413 * 13 12 11 15 15 C 1.34515 * 106.83954 * 0.36916 * 14 13 12 16 16 O 1.34299 * 125.78878 * 270.02788 * 12 11 10 17 17 C 1.34777 * 119.99832 * 90.00120 * 10 9 7 18 18 O 1.21278 * 119.99854 * 180.02562 * 17 10 9 19 19 C 1.50703 * 120.00161 * 359.97438 * 17 10 9 20 20 N 1.46505 * 109.47064 * 180.02562 * 19 17 10 21 21 C 1.38999 * 119.99714 * 179.97438 * 20 19 17 22 22 C 1.39132 * 119.70970 * 359.73314 * 21 20 19 23 23 C 1.38296 * 119.09971 * 179.74790 * 22 21 20 24 24 C 1.38886 * 118.50634 * 0.51556 * 23 22 21 25 25 C 1.38030 * 119.32632 * 359.72364 * 24 23 22 26 26 N 1.31975 * 120.85371 * 0.02562 * 25 24 23 27 27 H 0.97003 * 119.99435 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47617 * 59.99831 * 9 7 2 29 29 H 1.09000 * 109.47073 * 299.99588 * 9 7 2 30 30 H 1.09000 * 109.47082 * 30.00019 * 11 10 9 31 31 H 1.09004 * 109.46754 * 150.00286 * 11 10 9 32 32 H 1.08004 * 126.57962 * 0.03164 * 13 12 11 33 33 H 1.08001 * 126.58172 * 180.16867 * 14 13 12 34 34 H 1.08000 * 125.79257 * 179.74531 * 15 14 13 35 35 H 1.09002 * 109.47152 * 60.00245 * 19 17 10 36 36 H 1.09001 * 109.46980 * 300.00345 * 19 17 10 37 37 H 0.96996 * 119.99606 * 0.02562 * 20 19 17 38 38 H 1.08004 * 120.45363 * 359.97395 * 22 21 20 39 39 H 1.08004 * 120.74847 * 180.21257 * 23 22 21 40 40 H 1.07994 * 120.33872 * 179.70271 * 24 23 22 41 41 H 1.07996 * 119.57088 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2445 -3.2657 1.2678 12 6 5.6679 -3.0289 1.7022 13 6 6.0971 -2.0112 2.4699 14 6 7.4918 -2.1786 2.6298 15 6 7.8329 -3.2840 1.9434 16 8 6.7241 -3.7948 1.3835 17 6 4.2239 -3.2110 -1.1682 18 8 4.6277 -4.3546 -1.1681 19 6 3.9718 -2.5011 -2.4733 20 7 4.2882 -3.3991 -3.5868 21 6 4.1322 -2.9628 -4.8973 22 6 3.6699 -1.6741 -5.1447 23 6 3.5244 -1.2514 -6.4534 24 6 3.8370 -2.1386 -7.4752 25 6 4.2858 -3.4046 -7.1575 26 7 4.4199 -3.7793 -5.8991 27 1 -0.4849 0.8401 0.0004 28 1 3.8753 -0.6805 0.8888 29 1 3.8745 -0.6802 -0.8912 30 1 3.5640 -2.8814 2.0276 31 1 4.0774 -4.3350 1.1377 32 1 5.4920 -1.2194 2.8864 33 1 8.1565 -1.5395 3.1922 34 1 8.8293 -3.6914 1.8568 35 1 4.6017 -1.6134 -2.5317 36 1 2.9237 -2.2072 -2.5305 37 1 4.6058 -4.2982 -3.4094 38 1 3.4313 -1.0115 -4.3258 39 1 3.1709 -0.2554 -6.6759 40 1 3.7297 -1.8411 -8.5078 41 1 4.5304 -4.0976 -7.9489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900454111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:44 Heat of formation + Delta-G solvation = 32.433184 kcal Electronic energy + Delta-G solvation = -25690.862896 eV Core-core repulsion = 21959.120719 eV Total energy + Delta-G solvation = -3731.742177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.33608 -40.09422 -39.32923 -35.80337 -35.11464 -32.92349 -32.64072 -32.25262 -30.97480 -29.75746 -28.08264 -27.20543 -25.04623 -23.37010 -22.74916 -21.98483 -21.48393 -20.46215 -18.91625 -17.82691 -17.39763 -16.95489 -16.68719 -16.24496 -15.83055 -15.56791 -15.32157 -15.17454 -14.49958 -14.29896 -14.06526 -13.99511 -13.65667 -12.99216 -12.87962 -12.82203 -12.64629 -12.61165 -12.39464 -12.30064 -11.94801 -11.67041 -11.55792 -11.05586 -10.84851 -10.45626 -10.16018 -9.82130 -9.72908 -9.58473 -9.52640 -9.28224 -8.86040 -8.36356 -8.11930 -7.53209 -6.34401 -4.38590 1.45371 1.61681 1.85719 2.72157 2.92239 3.07624 3.12710 3.16407 3.19453 3.32471 3.83701 4.10359 4.14592 4.80293 4.85044 4.93526 4.96185 4.99264 5.19909 5.22900 5.29162 5.36684 5.48481 5.54718 5.59691 5.81891 5.89838 5.91755 5.95495 6.09740 6.16542 6.20398 6.27817 6.43331 6.46835 6.66770 6.69048 6.98124 7.15770 7.26391 7.35770 7.77944 7.85377 8.20483 8.36351 8.52618 8.71504 9.23230 10.77613 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.004935 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.446650 B = 5672.668583 C = 7935.560727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.206 3.794 10 N -0.582 5.582 11 C 0.197 3.803 12 C -0.018 4.018 13 C -0.203 4.203 14 C -0.218 4.218 15 C -0.049 4.049 16 O -0.166 6.166 17 C 0.518 3.482 18 O -0.553 6.553 19 C 0.110 3.890 20 N -0.710 5.710 21 C 0.411 3.589 22 C -0.240 4.240 23 C -0.033 4.033 24 C -0.246 4.246 25 C 0.146 3.854 26 N -0.549 5.549 27 H 0.268 0.732 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.197 0.803 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.413 0.587 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.745 -0.927 -4.182 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.124 4.124 3 Si 0.693 3.307 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.588 4.588 8 H 0.100 0.900 9 C 0.085 3.915 10 N -0.312 5.312 11 C 0.073 3.927 12 C -0.070 4.070 13 C -0.223 4.223 14 C -0.237 4.237 15 C -0.117 4.117 16 O -0.061 6.061 17 C 0.306 3.694 18 O -0.432 6.432 19 C -0.017 4.017 20 N -0.345 5.345 21 C 0.174 3.826 22 C -0.265 4.265 23 C -0.059 4.059 24 C -0.269 4.269 25 C -0.012 4.012 26 N -0.267 5.267 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.214 0.786 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.252 0.748 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.985 -2.346 -3.974 11.915 hybrid contribution 0.233 1.934 0.128 1.952 sum 11.218 -0.412 -3.845 11.866 Atomic orbital electron populations 1.69881 1.06232 1.27425 1.48561 1.24853 0.94701 0.98847 0.93998 0.86985 0.80530 0.84021 0.79124 1.19680 1.20711 1.18760 1.21329 0.88645 0.95250 1.53542 0.90048 1.19943 0.96115 0.77306 0.98152 1.47874 1.63381 1.16202 1.03752 1.19749 0.86040 0.99842 0.87032 1.23196 0.90135 0.93033 1.00616 1.21675 0.95241 1.00923 1.04451 1.21797 0.96059 1.00139 1.05686 1.24000 0.90636 0.97222 0.99850 1.84117 1.15342 1.47519 1.59095 1.20261 0.77029 0.86419 0.85740 1.90645 1.47310 1.17985 1.87297 1.21191 1.04026 0.92576 0.83947 1.44256 1.71746 1.17821 1.00630 1.18285 0.89819 0.89040 0.85407 1.21538 1.09673 0.96819 0.98504 1.21304 0.93481 0.99118 0.91971 1.21739 1.09008 0.96187 0.99966 1.22325 0.92744 0.94212 0.91910 1.67131 1.23206 1.36524 0.99825 0.92147 0.94236 0.95114 0.86448 0.88722 0.83370 0.83795 0.78605 0.89311 0.86951 0.74798 0.84720 0.85201 0.85550 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.30 13.96 55.43 0.77 -23.52 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 18.47 27.47 -169.99 -4.67 13.80 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.26 -5.30 6.54 56.52 0.37 -4.93 16 7 C -0.55 -13.25 9.83 -34.44 -0.34 -13.59 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 C 0.21 4.13 4.03 -5.19 -0.02 4.11 16 10 N -0.58 -10.98 2.44 -176.43 -0.43 -11.41 16 11 C 0.20 3.36 5.94 -5.20 -0.03 3.33 16 12 C -0.02 -0.30 6.90 -35.63 -0.25 -0.54 16 13 C -0.20 -3.06 10.81 -39.71 -0.43 -3.49 16 14 C -0.22 -2.89 10.91 -39.70 -0.43 -3.32 16 15 C -0.05 -0.64 12.09 29.42 0.36 -0.29 16 16 O -0.17 -2.78 10.65 5.70 0.06 -2.72 16 17 C 0.52 9.95 7.74 -10.98 -0.09 9.86 16 18 O -0.55 -11.61 15.25 5.56 0.08 -11.53 16 19 C 0.11 1.89 3.92 -5.19 -0.02 1.87 16 20 N -0.71 -12.12 5.70 -61.60 -0.35 -12.48 16 21 C 0.41 6.79 7.65 -155.03 -1.19 5.60 16 22 C -0.24 -3.59 9.33 -39.23 -0.37 -3.95 16 23 C -0.03 -0.42 10.17 -39.32 -0.40 -0.82 16 24 C -0.25 -2.88 10.10 -39.42 -0.40 -3.28 16 25 C 0.15 1.89 11.17 -17.57 -0.20 1.69 16 26 N -0.55 -8.85 10.39 -12.44 -0.13 -8.98 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.04 0.78 7.13 -51.93 -0.37 0.41 16 29 H 0.03 0.59 5.87 -51.93 -0.30 0.29 16 30 H 0.12 1.86 8.07 -51.93 -0.42 1.44 16 31 H 0.09 1.63 7.42 -51.93 -0.39 1.25 16 32 H 0.15 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.20 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.09 1.39 7.20 -51.93 -0.37 1.02 16 36 H 0.11 2.03 7.78 -51.93 -0.40 1.63 16 37 H 0.41 7.40 7.56 -40.82 -0.31 7.09 16 38 H 0.13 1.95 6.71 -52.48 -0.35 1.60 16 39 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -30.20 355.13 -8.25 -38.45 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -5.04 Total: 13.93 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -3.89 Total: -0.89 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.14 Total: -56.40 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.15 Total: -14.25 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.67 Total: 13.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.20 -8.25 -38.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900454111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.884 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds