Wall clock time and date at job start Tue Mar 31 2020 10:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48497 * 109.46755 * 270.00112 * 3 2 1 5 5 H 1.48501 * 109.47097 * 30.00081 * 3 2 1 6 6 H 1.48493 * 109.47239 * 150.00291 * 3 2 1 7 7 C 1.37880 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99744 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99896 * 269.99656 * 10 9 7 12 12 C 1.50699 * 109.47398 * 270.00022 * 11 10 9 13 13 C 1.34511 * 125.78993 * 89.71277 * 12 11 10 14 14 C 1.41379 * 106.84387 * 179.89413 * 13 12 11 15 15 C 1.34515 * 106.83954 * 0.36916 * 14 13 12 16 16 O 1.34299 * 125.78878 * 270.02788 * 12 11 10 17 17 C 1.34777 * 119.99832 * 90.00120 * 10 9 7 18 18 O 1.21278 * 119.99854 * 180.02562 * 17 10 9 19 19 C 1.50703 * 120.00161 * 359.97438 * 17 10 9 20 20 N 1.46505 * 109.47064 * 180.02562 * 19 17 10 21 21 C 1.38999 * 119.99714 * 179.97438 * 20 19 17 22 22 C 1.39132 * 119.70970 * 359.73314 * 21 20 19 23 23 C 1.38296 * 119.09971 * 179.74790 * 22 21 20 24 24 C 1.38886 * 118.50634 * 0.51556 * 23 22 21 25 25 C 1.38030 * 119.32632 * 359.72364 * 24 23 22 26 26 N 1.31975 * 120.85371 * 0.02562 * 25 24 23 27 27 H 0.97003 * 119.99435 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47617 * 59.99831 * 9 7 2 29 29 H 1.09000 * 109.47073 * 299.99588 * 9 7 2 30 30 H 1.09000 * 109.47082 * 30.00019 * 11 10 9 31 31 H 1.09004 * 109.46754 * 150.00286 * 11 10 9 32 32 H 1.08004 * 126.57962 * 0.03164 * 13 12 11 33 33 H 1.08001 * 126.58172 * 180.16867 * 14 13 12 34 34 H 1.08000 * 125.79257 * 179.74531 * 15 14 13 35 35 H 1.09002 * 109.47152 * 60.00245 * 19 17 10 36 36 H 1.09001 * 109.46980 * 300.00345 * 19 17 10 37 37 H 0.96996 * 119.99606 * 0.02562 * 20 19 17 38 38 H 1.08004 * 120.45363 * 359.97395 * 22 21 20 39 39 H 1.08004 * 120.74847 * 180.21257 * 23 22 21 40 40 H 1.07994 * 120.33872 * 179.70271 * 24 23 22 41 41 H 1.07996 * 119.57088 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2445 -3.2657 1.2678 12 6 5.6679 -3.0289 1.7022 13 6 6.0971 -2.0112 2.4699 14 6 7.4918 -2.1786 2.6298 15 6 7.8329 -3.2840 1.9434 16 8 6.7241 -3.7948 1.3835 17 6 4.2239 -3.2110 -1.1682 18 8 4.6277 -4.3546 -1.1681 19 6 3.9718 -2.5011 -2.4733 20 7 4.2882 -3.3991 -3.5868 21 6 4.1322 -2.9628 -4.8973 22 6 3.6699 -1.6741 -5.1447 23 6 3.5244 -1.2514 -6.4534 24 6 3.8370 -2.1386 -7.4752 25 6 4.2858 -3.4046 -7.1575 26 7 4.4199 -3.7793 -5.8991 27 1 -0.4849 0.8401 0.0004 28 1 3.8753 -0.6805 0.8888 29 1 3.8745 -0.6802 -0.8912 30 1 3.5640 -2.8814 2.0276 31 1 4.0774 -4.3350 1.1377 32 1 5.4920 -1.2194 2.8864 33 1 8.1565 -1.5395 3.1922 34 1 8.8293 -3.6914 1.8568 35 1 4.6017 -1.6134 -2.5317 36 1 2.9237 -2.2072 -2.5305 37 1 4.6058 -4.2982 -3.4094 38 1 3.4313 -1.0115 -4.3258 39 1 3.1709 -0.2554 -6.6759 40 1 3.7297 -1.8411 -8.5078 41 1 4.5304 -4.0976 -7.9489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900454111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:44 Heat of formation + Delta-G solvation = 13.885365 kcal Electronic energy + Delta-G solvation = -25691.667189 eV Core-core repulsion = 21959.120719 eV Total energy + Delta-G solvation = -3732.546470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.47980 -41.33763 -40.68413 -37.26406 -36.47152 -34.67104 -33.89563 -33.32175 -32.29158 -30.92700 -29.76132 -28.45175 -26.35201 -24.61741 -24.29874 -23.12531 -22.61052 -21.63107 -20.34012 -19.18075 -19.06607 -18.26780 -17.93007 -17.55365 -17.19610 -16.81249 -16.63424 -16.33114 -16.05203 -15.64747 -15.29067 -15.19643 -14.96459 -14.56138 -14.23536 -14.04880 -13.84862 -13.78686 -13.69991 -13.53756 -13.49583 -13.10821 -12.67263 -12.56766 -12.45364 -12.09190 -11.70509 -11.29275 -11.10591 -10.83173 -10.77412 -10.68370 -10.36858 -9.76676 -9.43500 -8.70296 -8.28555 -6.37496 0.40991 0.56699 0.69583 1.42329 1.43009 1.45104 1.53044 1.61789 1.89058 2.18120 2.35683 2.45944 3.03088 3.05604 3.40792 3.77782 3.80522 4.01060 4.09991 4.15754 4.16660 4.27407 4.33581 4.39854 4.42425 4.53399 4.54380 4.60577 4.81206 4.91488 4.92708 5.02149 5.17092 5.18340 5.38641 5.43535 5.45817 5.62745 5.67260 5.96955 6.11532 6.24314 6.42524 6.56324 6.69259 7.00114 7.24389 7.28934 8.87165 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.004935 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.446650 B = 5672.668583 C = 7935.560727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.259 1.259 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.543 4.543 8 H 0.035 0.965 9 C 0.214 3.786 10 N -0.583 5.583 11 C 0.196 3.804 12 C -0.047 4.047 13 C -0.200 4.200 14 C -0.222 4.222 15 C -0.045 4.045 16 O -0.193 6.193 17 C 0.512 3.488 18 O -0.576 6.576 19 C 0.123 3.877 20 N -0.719 5.719 21 C 0.385 3.615 22 C -0.257 4.257 23 C -0.034 4.034 24 C -0.232 4.232 25 C 0.134 3.866 26 N -0.576 5.576 27 H 0.269 0.731 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.236 0.764 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.405 0.595 38 H 0.133 0.867 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.173 1.043 -5.244 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.174 4.174 3 Si 0.755 3.245 4 H -0.184 1.184 5 H -0.214 1.214 6 H -0.160 1.160 7 C -0.581 4.581 8 H 0.054 0.946 9 C 0.093 3.907 10 N -0.313 5.313 11 C 0.073 3.927 12 C -0.098 4.098 13 C -0.220 4.220 14 C -0.241 4.241 15 C -0.112 4.112 16 O -0.089 6.089 17 C 0.301 3.699 18 O -0.457 6.457 19 C -0.005 4.005 20 N -0.354 5.354 21 C 0.151 3.849 22 C -0.283 4.283 23 C -0.060 4.060 24 C -0.254 4.254 25 C -0.023 4.023 26 N -0.295 5.295 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.142 0.858 31 H 0.101 0.899 32 H 0.175 0.825 33 H 0.192 0.808 34 H 0.252 0.748 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.242 0.758 38 H 0.150 0.850 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 13.430 -0.377 -5.048 14.353 hybrid contribution -0.524 1.212 0.384 1.375 sum 12.907 0.835 -4.664 13.749 Atomic orbital electron populations 1.70045 1.08413 1.28423 1.50869 1.25704 0.95310 1.02823 0.93535 0.85934 0.79942 0.78689 0.79910 1.18360 1.21411 1.16007 1.21433 0.90777 0.93451 1.52457 0.94635 1.19788 0.93237 0.78265 0.99393 1.47913 1.63025 1.15921 1.04440 1.19745 0.87484 0.99033 0.86447 1.22963 0.89797 0.94391 1.02640 1.21942 0.96493 1.00262 1.03310 1.22161 0.95475 1.00561 1.05861 1.24868 0.91031 0.96950 0.98371 1.84094 1.16333 1.48401 1.60093 1.20636 0.76569 0.86262 0.86463 1.90622 1.48413 1.18948 1.87670 1.21035 1.03354 0.92939 0.83167 1.44203 1.72729 1.17401 1.01070 1.18490 0.91300 0.89970 0.85169 1.21671 1.10449 0.96322 0.99811 1.21727 0.92549 1.00601 0.91125 1.22173 1.06524 0.95166 1.01583 1.22971 0.92260 0.95644 0.91432 1.67120 1.24039 1.37319 1.01008 0.92221 0.92879 0.93255 0.85844 0.89897 0.82471 0.80808 0.74830 0.87625 0.88420 0.75750 0.84958 0.82354 0.81840 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.15 13.96 21.45 0.30 -52.85 16 2 C 0.03 1.32 5.47 84.66 0.46 1.78 16 3 Si 0.93 37.11 27.47 68.60 1.88 38.99 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.29 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.24 -8.38 6.54 99.48 0.65 -7.73 16 7 C -0.54 -26.81 9.83 25.60 0.25 -26.56 16 8 H 0.04 2.04 8.06 -2.91 -0.02 2.02 16 9 C 0.21 8.48 4.03 85.63 0.35 8.82 16 10 N -0.58 -22.40 2.44 -830.50 -2.03 -24.43 16 11 C 0.20 6.87 5.94 85.63 0.51 7.38 16 12 C -0.05 -1.54 6.90 24.83 0.17 -1.37 16 13 C -0.20 -5.69 10.81 22.19 0.24 -5.45 16 14 C -0.22 -5.24 10.91 22.19 0.24 -4.99 16 15 C -0.04 -1.08 12.09 66.97 0.81 -0.27 16 16 O -0.19 -6.37 10.65 -2.51 -0.03 -6.40 16 17 C 0.51 20.29 7.74 87.66 0.68 20.97 16 18 O -0.58 -25.18 15.25 -3.02 -0.05 -25.23 16 19 C 0.12 4.32 3.92 85.63 0.34 4.66 16 20 N -0.72 -25.41 5.70 -348.79 -1.99 -27.40 16 21 C 0.39 12.83 7.65 133.06 1.02 13.85 16 22 C -0.26 -7.52 9.33 22.50 0.21 -7.31 16 23 C -0.03 -0.78 10.17 22.44 0.23 -0.56 16 24 C -0.23 -4.69 10.10 22.38 0.23 -4.46 16 25 C 0.13 3.19 11.17 84.62 0.95 4.14 16 26 N -0.58 -18.41 10.39 -193.27 -2.01 -20.42 16 27 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.05 1.99 7.13 -2.39 -0.02 1.98 16 29 H 0.05 1.80 5.87 -2.39 -0.01 1.79 16 30 H 0.12 4.04 8.07 -2.39 -0.02 4.02 16 31 H 0.08 3.04 7.42 -2.39 -0.02 3.02 16 32 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 33 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.24 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.11 3.29 7.20 -2.39 -0.02 3.27 16 36 H 0.10 3.70 7.78 -2.39 -0.02 3.68 16 37 H 0.41 15.25 7.56 -92.71 -0.70 14.55 16 38 H 0.13 3.80 6.71 -2.91 -0.02 3.78 16 39 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -68.37 355.13 3.07 -65.30 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: 0.31 Total: 41.80 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.67 Total: 10.63 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -5.72 Total: -125.10 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.07 Total: -31.63 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 1.88 Total: 38.99 kcal Total: -68.37 3.07 -65.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900454111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.185 kcal (2) G-P(sol) polarization free energy of solvation -68.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds