Wall clock time and date at job start Tue Mar 31 2020 11:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38309 * 119.92458 * 2 1 4 4 C 1.38089 * 120.06863 * 180.27833 * 3 2 1 5 5 C 1.38908 * 119.92910 * 359.47341 * 4 3 2 6 6 N 1.39840 * 120.07641 * 180.27692 * 5 4 3 7 7 C 1.34781 * 119.99364 * 325.27640 * 6 5 4 8 8 O 1.21502 * 120.00385 * 4.50311 * 7 6 5 9 9 C 1.48294 * 119.99287 * 184.49969 * 7 6 5 10 10 C 1.42288 * 126.93540 * 179.97438 * 9 7 6 11 11 C 1.35306 * 103.92106 * 180.02562 * 10 9 7 12 12 C 1.50700 * 126.66658 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47301 * 89.99631 * 12 11 10 14 14 C 1.36943 * 120.00244 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99643 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00009 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00032 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99881 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46939 * 60.00273 * 18 16 14 20 20 H 1.48501 * 109.46999 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47288 * 300.00527 * 18 16 14 22 22 O 1.34016 * 106.67542 * 0.02562 * 11 10 9 23 23 N 1.20914 * 111.84680 * 359.70714 * 22 11 10 24 24 C 1.38878 * 119.85587 * 0.24960 * 5 4 3 25 25 C 1.50697 * 120.03960 * 180.02562 * 24 5 4 26 26 C 1.38126 * 119.92162 * 0.02562 * 24 5 4 27 27 H 1.08996 * 109.46717 * 270.26828 * 1 2 3 28 28 H 1.08997 * 109.47101 * 30.27222 * 1 2 3 29 29 H 1.09000 * 109.47044 * 150.27333 * 1 2 3 30 30 H 1.08002 * 119.96780 * 0.02562 * 3 2 1 31 31 H 1.08006 * 120.03331 * 179.74895 * 4 3 2 32 32 H 0.97001 * 120.00247 * 145.27570 * 6 5 4 33 33 H 1.08006 * 128.04128 * 359.97438 * 10 9 7 34 34 H 1.08995 * 109.47685 * 209.99850 * 12 11 10 35 35 H 1.09002 * 109.47028 * 329.99919 * 12 11 10 36 36 H 0.97004 * 120.00170 * 0.02562 * 13 12 11 37 37 H 0.96999 * 119.99435 * 179.97438 * 17 16 14 38 38 H 1.09007 * 109.46943 * 90.00121 * 25 24 5 39 39 H 1.08998 * 109.47428 * 210.00122 * 25 24 5 40 40 H 1.08998 * 109.47317 * 330.00959 * 25 24 5 41 41 H 1.08004 * 119.95848 * 179.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2022 -0.0058 5 6 4.2740 0.0001 -0.0006 6 7 5.6724 0.0001 -0.0006 7 6 6.3462 0.9566 -0.6697 8 8 5.7414 1.8648 -1.2042 9 6 7.8257 0.9004 -0.7534 10 6 8.6802 1.8245 -1.4169 11 6 9.9220 1.3321 -1.2015 12 6 11.2208 1.9222 -1.6872 13 7 11.7363 2.8590 -0.6857 14 6 12.9136 3.5217 -0.9099 15 1 13.4618 3.3540 -1.8252 16 6 13.4017 4.4097 0.0388 17 7 12.7332 4.6145 1.1540 18 14 15.0079 5.3131 -0.2667 19 1 14.8875 6.1342 -1.4983 20 1 15.3073 6.1953 0.8897 21 1 16.1060 4.3276 -0.4342 22 8 9.7725 0.2170 -0.4733 23 7 8.6101 -0.0076 -0.2279 24 6 3.5781 -1.2017 0.0052 25 6 4.3291 -2.5082 0.0115 26 6 2.1969 -1.1982 0.0052 27 1 -0.3632 0.0048 1.0276 28 1 -0.3633 0.8875 -0.5180 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6552 2.1330 0.0004 31 1 4.1160 2.1386 -0.0099 32 1 6.1574 -0.6883 0.4809 33 1 8.4023 2.7122 -1.9657 34 1 11.9460 1.1240 -1.8452 35 1 11.0515 2.4504 -2.6255 36 1 11.2437 3.0099 0.1362 37 1 13.0746 5.2347 1.8170 38 1 4.5102 -2.8183 1.0407 39 1 3.7386 -3.2692 -0.4987 40 1 5.2818 -2.3822 -0.5028 41 1 1.6551 -2.1325 0.0093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901396263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:57 Heat of formation + Delta-G solvation = 44.387416 kcal Electronic energy + Delta-G solvation = -24550.923110 eV Core-core repulsion = 20819.699308 eV Total energy + Delta-G solvation = -3731.223802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.21623 -41.85363 -39.86693 -37.02454 -36.46705 -35.22219 -34.19453 -33.73600 -32.43315 -31.94897 -28.21383 -27.85280 -27.75792 -25.58404 -24.81384 -23.88719 -23.44416 -21.59530 -21.21267 -19.71857 -19.02476 -18.82352 -18.12692 -18.07226 -16.80473 -16.60138 -16.24560 -16.22107 -15.54643 -15.44458 -15.15680 -15.06949 -14.93296 -14.73513 -14.45898 -14.17816 -14.03842 -13.48787 -13.45284 -13.00084 -12.97621 -12.84943 -12.76452 -12.63750 -12.49604 -12.15900 -12.10700 -11.91680 -11.72331 -11.60375 -11.21316 -10.98618 -10.67472 -9.74818 -9.09791 -9.07390 -7.95886 -5.28414 -0.29837 0.24246 0.37541 0.56469 1.51410 1.52424 1.55210 1.61020 1.79673 1.83711 2.58432 2.63267 2.73313 3.32377 3.41045 3.78728 3.82464 3.85105 3.99113 4.04991 4.06906 4.18098 4.32383 4.34694 4.39728 4.62974 4.71076 4.72289 4.78141 4.83833 4.87945 4.88124 4.96614 5.07664 5.18523 5.30789 5.35281 5.43474 5.51398 5.64509 6.00958 6.01526 6.22224 6.63278 6.80653 7.30397 7.96027 8.20522 9.27233 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029899 B = 0.002233 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.264747 B =12534.426318 C =13056.553874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.134 4.134 5 C 0.109 3.891 6 N -0.645 5.645 7 C 0.605 3.395 8 O -0.527 6.527 9 C -0.037 4.037 10 C -0.177 4.177 11 C -0.008 4.008 12 C 0.227 3.773 13 N -0.744 5.744 14 C -0.247 4.247 15 H 0.092 0.908 16 C -0.075 4.075 17 N -0.971 5.971 18 Si 0.980 3.020 19 H -0.275 1.275 20 H -0.301 1.301 21 H -0.274 1.274 22 O 0.123 5.877 23 N -0.333 5.333 24 C -0.104 4.104 25 C -0.117 4.117 26 C -0.106 4.106 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.424 0.576 33 H 0.189 0.811 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.374 0.626 37 H 0.252 0.748 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.819 -15.150 -3.603 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.154 4.154 5 C 0.016 3.984 6 N -0.291 5.291 7 C 0.391 3.609 8 O -0.402 6.402 9 C -0.196 4.196 10 C -0.200 4.200 11 C -0.071 4.071 12 C 0.101 3.899 13 N -0.388 5.388 14 C -0.378 4.378 15 H 0.109 0.891 16 C -0.267 4.267 17 N -0.621 5.621 18 Si 0.808 3.192 19 H -0.200 1.200 20 H -0.227 1.227 21 H -0.200 1.200 22 O 0.047 5.953 23 N -0.034 5.034 24 C -0.106 4.106 25 C -0.173 4.173 26 C -0.124 4.124 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.156 0.844 31 H 0.136 0.864 32 H 0.263 0.737 33 H 0.207 0.793 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -23.338 -15.575 -3.378 28.261 hybrid contribution 1.125 1.399 0.282 1.817 sum -22.213 -14.177 -3.096 26.533 Atomic orbital electron populations 1.20825 0.88790 1.03801 1.03265 1.20309 0.97845 0.92523 0.98924 1.21145 0.92718 0.99172 1.00645 1.21300 0.95402 0.97238 1.01476 1.17778 0.81334 0.94726 1.04586 1.43137 1.05461 1.30078 1.50418 1.16935 0.83843 0.82014 0.78121 1.90781 1.68186 1.34390 1.46826 1.23280 0.95794 0.96578 1.03949 1.22605 0.89883 1.02568 1.04986 1.24845 0.98987 0.87640 0.95636 1.19440 0.85826 0.92158 0.92487 1.42511 1.25789 1.49915 1.20576 1.19641 0.98237 1.17113 1.02777 0.89052 1.25666 1.02704 1.01731 0.96639 1.69837 1.41604 1.40596 1.10066 0.85127 0.79361 0.78119 0.76596 1.20035 1.22721 1.20002 1.84763 1.20960 1.37108 1.52432 1.74092 0.89824 1.21886 1.17607 1.19998 0.94761 0.93814 1.02014 1.20829 0.99801 0.93100 1.03591 1.21092 0.92118 0.98958 1.00260 0.90096 0.91011 0.90104 0.84427 0.86443 0.73729 0.79339 0.91629 0.90057 0.79436 0.93978 0.89534 0.89037 0.92376 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.24 0.71 -0.36 16 2 C -0.10 -1.56 5.88 -19.84 -0.12 -1.68 16 3 C -0.12 -2.43 9.69 22.25 0.22 -2.22 16 4 C -0.13 -3.51 8.70 22.40 0.19 -3.32 16 5 C 0.11 2.67 6.29 38.18 0.24 2.91 16 6 N -0.65 -16.36 4.74 -305.71 -1.45 -17.81 16 7 C 0.60 18.75 7.69 86.92 0.67 19.42 16 8 O -0.53 -18.78 14.36 -3.72 -0.05 -18.83 16 9 C -0.04 -1.19 7.19 42.95 0.31 -0.88 16 10 C -0.18 -5.70 10.92 22.60 0.25 -5.46 16 11 C -0.01 -0.26 6.84 25.01 0.17 -0.09 16 12 C 0.23 8.10 6.82 85.63 0.58 8.69 16 13 N -0.74 -35.78 5.59 -347.18 -1.94 -37.72 16 14 C -0.25 -12.96 9.99 84.03 0.84 -12.12 16 15 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 16 C -0.08 -4.17 5.50 84.86 0.47 -3.71 16 17 N -0.97 -58.71 13.06 21.65 0.28 -58.42 16 18 Si 0.98 44.59 29.55 68.60 2.03 46.62 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 O 0.12 4.04 11.18 71.87 0.80 4.84 16 23 N -0.33 -10.38 11.84 -49.51 -0.59 -10.97 16 24 C -0.10 -1.94 5.90 -19.74 -0.12 -2.06 16 25 C -0.12 -1.55 9.47 71.24 0.67 -0.88 16 26 C -0.11 -1.65 9.35 22.25 0.21 -1.44 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 29 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 30 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.12 3.57 6.20 -2.91 -0.02 3.55 16 32 H 0.42 9.13 7.61 -92.71 -0.71 8.42 16 33 H 0.19 5.69 8.06 -2.91 -0.02 5.66 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.37 19.85 7.66 -92.71 -0.71 19.14 16 37 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.09 0.93 8.14 -2.38 -0.02 0.92 16 39 H 0.09 0.88 8.09 -2.39 -0.02 0.86 16 40 H 0.06 0.87 7.17 -2.39 -0.02 0.86 16 41 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -67.15 357.67 4.05 -63.10 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.33 Total: 32.39 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.30 Total: -3.20 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -3.70 Total: -124.92 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.75 Total: -14.00 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.15 4.05 -63.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901396263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.488 kcal (2) G-P(sol) polarization free energy of solvation -67.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds