Wall clock time and date at job start Tue Mar 31 2020 10:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86793 * 120.00277 * 2 1 4 4 H 1.48504 * 109.47400 * 270.00141 * 3 2 1 5 5 H 1.48501 * 109.46949 * 29.99989 * 3 2 1 6 6 H 1.48498 * 109.47486 * 149.99741 * 3 2 1 7 7 C 1.38640 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00363 * 359.97438 * 7 2 1 9 9 O 1.34810 * 119.99757 * 180.02562 * 7 2 1 10 10 C 1.35749 * 117.00133 * 185.06118 * 9 7 2 11 11 C 1.39448 * 120.37683 * 354.52244 * 10 9 7 12 12 C 1.38196 * 118.45708 * 179.97438 * 11 10 9 13 13 C 1.39439 * 119.14854 * 0.02562 * 12 11 10 14 14 C 1.48311 * 119.65535 * 179.97438 * 13 12 11 15 15 C 1.40931 * 126.24041 * 5.02601 * 14 13 12 16 16 N 1.30640 * 108.07614 * 180.02562 * 15 14 13 17 17 N 1.40004 * 108.55612 * 359.97438 * 16 15 14 18 18 C 1.46498 * 125.87437 * 180.02562 * 17 16 15 19 19 H 1.08998 * 109.47901 * 184.95442 * 18 17 16 20 20 C 1.53091 * 109.48210 * 304.97286 * 18 17 16 21 21 C 1.53180 * 109.16701 * 177.58917 * 20 18 17 22 22 C 1.53174 * 109.03651 * 303.02519 * 21 20 18 23 23 C 1.53096 * 109.16395 * 56.97859 * 22 21 20 24 24 O 1.42898 * 109.48270 * 64.91714 * 18 17 16 25 25 C 1.34741 * 108.24582 * 359.73554 * 17 16 15 26 26 N 1.32670 * 120.69162 * 359.97158 * 13 12 11 27 27 C 1.31743 * 121.67438 * 0.02647 * 26 13 12 28 28 H 0.96998 * 119.99904 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.77003 * 0.25873 * 11 10 9 30 30 H 1.08003 * 120.42366 * 179.97438 * 12 11 10 31 31 H 1.07996 * 125.95638 * 359.97032 * 15 14 13 32 32 H 1.08995 * 109.52710 * 297.50069 * 20 18 17 33 33 H 1.09001 * 109.52054 * 57.62785 * 20 18 17 34 34 H 1.09009 * 109.53565 * 62.89072 * 21 20 18 35 35 H 1.08994 * 109.54685 * 183.15222 * 21 20 18 36 36 H 1.09003 * 109.52275 * 176.87949 * 22 21 20 37 37 H 1.08993 * 109.52192 * 297.06902 * 22 21 20 38 38 H 1.08996 * 109.48492 * 62.37273 * 23 22 21 39 39 H 1.08997 * 109.47815 * 182.39865 * 23 22 21 40 40 H 1.07999 * 126.19727 * 180.26128 * 25 17 16 41 41 H 1.07991 * 119.60639 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0005 9 8 3.3569 -1.2007 0.0000 10 6 3.9733 -2.4054 -0.1073 11 6 3.2264 -3.5830 -0.0974 12 6 3.8946 -4.7875 -0.2096 13 6 5.2839 -4.7850 -0.3276 14 6 6.0124 -6.0713 -0.4482 15 6 5.4316 -7.3507 -0.5571 16 7 6.3960 -8.2278 -0.6426 17 7 7.6202 -7.5502 -0.5929 18 6 8.9468 -8.1681 -0.6591 19 1 9.7109 -7.4055 -0.5087 20 6 9.0683 -9.2346 0.4325 21 6 10.4347 -9.9174 0.3186 22 6 10.5837 -10.5055 -1.0879 23 6 10.4038 -9.3898 -2.1207 24 8 9.1258 -8.7766 -1.9396 25 6 7.3681 -6.2314 -0.4801 26 7 5.9611 -3.6442 -0.3333 27 6 5.3547 -2.4793 -0.2282 28 1 -0.4850 0.8400 -0.0004 29 1 2.1505 -3.5541 -0.0087 30 1 3.3476 -5.7188 -0.2051 31 1 4.3738 -7.5681 -0.5670 32 1 8.9760 -8.7655 1.4120 33 1 8.2785 -9.9753 0.3075 34 1 11.2236 -9.1857 0.4934 35 1 10.5061 -10.7158 1.0572 36 1 11.5753 -10.9452 -1.1957 37 1 9.8252 -11.2724 -1.2442 38 1 11.1871 -8.6433 -1.9897 39 1 10.4664 -9.8102 -3.1244 40 1 8.1048 -5.4438 -0.4221 41 1 5.9388 -1.5710 -0.2370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904811194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:02 Heat of formation + Delta-G solvation = 41.073973 kcal Electronic energy + Delta-G solvation = -24719.397891 eV Core-core repulsion = 20988.030407 eV Total energy + Delta-G solvation = -3731.367484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23793 -39.70523 -39.33103 -37.27823 -34.16200 -33.39217 -32.54108 -31.44510 -31.05857 -30.11462 -28.02864 -25.68251 -25.04040 -24.12271 -22.97333 -22.37876 -21.12715 -20.51069 -19.91175 -18.02780 -17.80078 -17.25916 -16.76295 -16.07229 -15.50294 -15.37601 -15.08655 -14.79929 -14.47443 -14.37135 -14.15882 -13.94206 -13.49531 -13.22310 -13.18042 -12.91648 -12.61906 -12.50010 -12.39748 -12.11417 -11.99727 -11.69839 -11.54544 -11.41195 -10.99483 -10.94224 -10.58424 -10.33965 -10.04709 -9.74474 -9.42584 -9.20438 -9.06038 -8.86628 -8.65484 -7.16047 -6.52912 -4.17968 1.54735 1.97407 2.07458 2.27961 3.12005 3.19187 3.23396 3.34876 3.51951 4.15223 4.17041 4.24986 4.32576 4.41801 4.51902 4.61528 4.64720 4.85853 4.87969 4.95180 5.01650 5.09505 5.13748 5.20727 5.30571 5.41240 5.48171 5.55399 5.57176 5.64672 5.73462 5.81196 5.87155 6.05978 6.24952 6.45740 6.57304 6.65593 6.88119 6.98464 7.12427 7.29261 7.63580 7.76954 7.87983 8.68227 8.81090 9.39847 10.53928 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.041880 B = 0.002215 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.408749 B =12640.710699 C =12983.725810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.205 6.205 10 C 0.106 3.894 11 C -0.181 4.181 12 C -0.110 4.110 13 C 0.104 3.896 14 C -0.158 4.158 15 C 0.063 3.937 16 N -0.286 5.286 17 N -0.372 5.372 18 C 0.343 3.657 19 H 0.093 0.907 20 C -0.155 4.155 21 C -0.120 4.120 22 C -0.160 4.160 23 C 0.069 3.931 24 O -0.386 6.386 25 C 0.080 3.920 26 N -0.446 5.446 27 C 0.035 3.965 28 H 0.282 0.718 29 H 0.143 0.857 30 H 0.122 0.878 31 H 0.186 0.814 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.179 0.821 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.861 -17.477 -0.294 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.108 6.108 10 C 0.051 3.949 11 C -0.208 4.208 12 C -0.130 4.130 13 C -0.033 4.033 14 C -0.170 4.170 15 C -0.126 4.126 16 N -0.105 5.105 17 N -0.158 5.158 18 C 0.201 3.799 19 H 0.110 0.890 20 C -0.193 4.193 21 C -0.158 4.158 22 C -0.198 4.198 23 C -0.008 4.008 24 O -0.304 6.304 25 C -0.065 4.065 26 N -0.156 5.156 27 C -0.127 4.127 28 H 0.092 0.908 29 H 0.161 0.839 30 H 0.140 0.860 31 H 0.202 0.798 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.196 0.804 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 20.913 -18.412 -0.610 27.870 hybrid contribution -0.967 1.594 0.277 1.885 sum 19.946 -16.818 -0.333 26.092 Atomic orbital electron populations 1.69647 1.05632 1.28797 1.46808 1.24500 0.95072 0.99035 0.95359 0.86154 0.80373 0.81144 0.79130 1.19711 1.20660 1.18159 1.20781 0.76720 0.96770 1.52392 0.87553 1.83563 1.22772 1.25204 1.79246 1.20245 0.93171 0.86160 0.95328 1.21596 1.01580 0.91529 1.06049 1.21614 0.93962 0.97948 0.99468 1.18381 0.89564 0.89437 1.05922 1.18543 0.91444 0.92214 1.14772 1.24003 0.99224 0.90132 0.99232 1.77180 0.88617 1.21212 1.23533 1.48258 1.05043 1.04618 1.57831 1.21688 0.80149 0.93032 0.84996 0.88962 1.22375 0.99152 0.99199 0.98617 1.21608 0.96310 1.00520 0.97381 1.22254 1.03090 0.99216 0.95247 1.22613 0.84090 0.94124 0.99962 1.87956 1.35627 1.73828 1.33003 1.22515 0.97704 0.85547 1.00701 1.67357 1.39627 0.97372 1.11260 1.21684 0.89460 0.95420 1.06101 0.90817 0.83930 0.85992 0.79765 0.90151 0.89291 0.91423 0.90587 0.90335 0.90567 0.92720 0.88135 0.80355 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.39 13.96 55.48 0.77 -23.62 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 20.90 28.62 -169.99 -4.86 16.04 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.26 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.39 -10.59 9.95 30.88 0.31 -10.28 16 8 H 0.11 2.93 5.48 -52.49 -0.29 2.64 16 9 O -0.20 -5.18 8.59 0.11 0.00 -5.18 16 10 C 0.11 2.37 6.67 -38.90 -0.26 2.12 16 11 C -0.18 -3.77 9.25 -39.15 -0.36 -4.13 16 12 C -0.11 -1.97 9.60 -39.15 -0.38 -2.35 16 13 C 0.10 1.89 6.75 -82.91 -0.56 1.33 16 14 C -0.16 -2.52 6.05 -105.35 -0.64 -3.16 16 15 C 0.06 0.92 11.40 -17.04 -0.19 0.72 16 16 N -0.29 -4.31 12.35 30.82 0.38 -3.93 16 17 N -0.37 -5.04 3.54 -59.13 -0.21 -5.25 16 18 C 0.34 3.54 3.58 -4.00 -0.01 3.52 16 19 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 20 C -0.15 -1.32 5.60 -26.59 -0.15 -1.47 16 21 C -0.12 -0.69 6.03 -26.55 -0.16 -0.85 16 22 C -0.16 -0.90 6.14 -26.59 -0.16 -1.06 16 23 C 0.07 0.47 6.84 37.21 0.25 0.73 16 24 O -0.39 -4.35 10.63 -35.23 -0.37 -4.73 16 25 C 0.08 1.14 11.16 -16.89 -0.19 0.95 16 26 N -0.45 -8.56 10.06 -9.61 -0.10 -8.65 16 27 C 0.04 0.70 11.14 -17.36 -0.19 0.51 16 28 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.14 3.02 5.75 -52.49 -0.30 2.72 16 30 H 0.12 1.79 7.05 -52.48 -0.37 1.42 16 31 H 0.19 2.16 7.35 -52.49 -0.39 1.78 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 34 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.18 2.20 8.06 -52.49 -0.42 1.77 16 41 H 0.15 2.70 8.06 -52.49 -0.42 2.28 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -31.50 347.96 -7.06 -38.57 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.13 Total: 3.27 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -2.79 Total: -11.76 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.85 Total: -41.46 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.37 Total: -9.90 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.86 Total: 16.04 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.50 -7.06 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904811194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.640 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds