Wall clock time and date at job start Tue Mar 31 2020 10:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99884 * 2 1 4 4 H 1.48501 * 109.47229 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47201 * 30.00085 * 3 2 1 6 6 H 1.48501 * 109.47274 * 150.00006 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47327 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47428 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00211 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00048 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99940 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47148 * 179.72251 * 15 14 12 17 17 C 1.38358 * 119.85428 * 269.72402 * 16 15 14 18 18 C 1.37959 * 120.14715 * 179.76824 * 17 16 15 19 19 C 1.39576 * 119.84933 * 0.50557 * 18 17 16 20 20 C 1.47828 * 120.14332 * 179.72371 * 19 18 17 21 21 C 1.35771 * 126.58086 * 359.73811 * 20 19 18 22 22 N 1.34138 * 107.51489 * 179.89584 * 21 20 19 23 23 C 1.30364 * 108.90259 * 0.37038 * 22 21 20 24 24 O 1.33997 * 109.03299 * 359.76692 * 23 22 21 25 25 C 1.39568 * 119.71256 * 359.74535 * 19 18 17 26 26 C 1.37961 * 119.85599 * 0.02562 * 25 19 18 27 27 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47519 * 59.99714 * 9 7 2 29 29 H 1.09001 * 109.46880 * 299.99708 * 9 7 2 30 30 H 1.08998 * 109.47065 * 59.99424 * 10 9 7 31 31 H 1.09001 * 109.46892 * 299.99688 * 10 9 7 32 32 H 0.97004 * 119.99747 * 0.02562 * 11 10 9 33 33 H 0.97005 * 120.00161 * 359.72198 * 14 12 11 34 34 H 1.09001 * 109.46512 * 299.72412 * 15 14 12 35 35 H 1.08998 * 109.47174 * 59.71534 * 15 14 12 36 36 H 1.08002 * 119.92086 * 0.02562 * 17 16 15 37 37 H 1.08004 * 120.07625 * 180.27370 * 18 17 16 38 38 H 1.08004 * 126.24768 * 0.02562 * 21 20 19 39 39 H 1.08001 * 125.48192 * 179.73038 * 23 22 21 40 40 H 1.08005 * 120.07713 * 179.97438 * 25 19 18 41 41 H 1.07995 * 119.92872 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 2.1867 -6.0980 0.0031 13 8 3.4026 -6.0980 0.0036 14 7 1.5129 -7.2652 0.0031 15 6 2.2454 -8.5340 0.0044 16 6 1.2661 -9.6794 0.0110 17 6 0.8270 -10.2031 1.2140 18 6 -0.0731 -11.2485 1.2272 19 6 -0.5326 -11.7848 0.0233 20 6 -1.4924 -12.9091 0.0299 21 6 -2.0100 -13.5248 1.1237 22 7 -2.8381 -14.4873 0.6911 23 6 -2.8400 -14.4884 -0.6125 24 8 -2.0187 -13.5249 -1.0515 25 6 -0.0817 -11.2553 -1.1867 26 6 0.8148 -10.2066 -1.1859 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5572 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6039 0.8922 31 1 2.8726 -3.6048 -0.8877 32 1 0.5428 -4.9308 0.0016 33 1 0.5428 -7.2652 0.0068 34 1 2.8690 -8.5942 -0.8876 35 1 2.8751 -8.5890 0.8923 36 1 1.1866 -9.7898 2.1448 37 1 -0.4185 -11.6536 2.1670 38 1 -1.7958 -13.2823 2.1541 39 1 -3.4112 -15.1584 -1.2380 40 1 -0.4331 -11.6660 -2.1217 41 1 1.1649 -9.7963 -2.1215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906605285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:34 Heat of formation + Delta-G solvation = 9.293622 kcal Electronic energy + Delta-G solvation = -23648.211193 eV Core-core repulsion = 19915.465609 eV Total energy + Delta-G solvation = -3732.745583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.74883 -40.06833 -39.24381 -35.47293 -35.25756 -34.59381 -32.97726 -32.56307 -31.49237 -30.02342 -29.06673 -26.31218 -24.51490 -23.89525 -23.03794 -22.24701 -21.28002 -21.01513 -20.56983 -18.59430 -18.18016 -17.05070 -16.78375 -16.40732 -16.09792 -15.98472 -15.41561 -15.13302 -14.61652 -14.51159 -14.30831 -14.04707 -13.88260 -13.67581 -13.47693 -13.29575 -13.12231 -12.50757 -12.27811 -11.88342 -11.79310 -11.51387 -11.18612 -11.04691 -11.02901 -10.62950 -10.39122 -10.31737 -9.94625 -9.56181 -9.45080 -9.26422 -9.06800 -8.54085 -8.48520 -8.25507 -6.08928 -4.11565 0.09536 0.92470 1.41952 2.17117 2.24804 3.00266 3.29967 3.36064 3.40139 3.46989 3.57082 3.73016 4.10286 4.32843 4.40390 4.42383 4.48114 4.53889 4.71914 4.84083 4.91490 5.13730 5.27469 5.28225 5.35410 5.36715 5.60565 5.60752 5.78424 5.86447 5.97304 6.16101 6.29142 6.39621 6.39926 6.53063 6.77767 6.99282 7.17863 7.21629 7.56954 7.63552 7.90219 8.25868 8.41884 8.92648 8.98338 9.53193 11.02710 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.001753 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.124789 B =15973.091982 C =16493.409432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.751 5.751 15 C 0.179 3.821 16 C -0.091 4.091 17 C -0.094 4.094 18 C -0.096 4.096 19 C -0.015 4.015 20 C 0.001 3.999 21 C -0.024 4.024 22 N -0.486 5.486 23 C 0.173 3.827 24 O -0.199 6.199 25 C -0.100 4.100 26 C -0.095 4.095 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.393 0.607 33 H 0.395 0.605 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.187 0.813 39 H 0.252 0.748 40 H 0.130 0.870 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 -29.628 -0.690 30.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.399 3.601 13 O -0.477 6.477 14 N -0.408 5.408 15 C 0.055 3.945 16 C -0.091 4.091 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.016 4.016 20 C -0.052 4.052 21 C -0.163 4.163 22 N -0.214 5.214 23 C -0.052 4.052 24 O -0.085 6.085 25 C -0.118 4.118 26 C -0.114 4.114 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.204 0.796 39 H 0.268 0.732 40 H 0.148 0.852 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.560 -29.871 -0.376 30.219 hybrid contribution -0.340 1.205 -0.469 1.337 sum -4.900 -28.665 -0.844 29.093 Atomic orbital electron populations 1.69955 1.06089 1.26850 1.50453 1.24997 0.94897 0.99414 0.95016 0.86505 0.79840 0.82979 0.78185 1.20576 1.21197 1.19713 1.21056 0.93282 0.90357 1.51251 0.92200 1.19332 0.94271 0.91095 0.97823 1.21598 0.95637 0.80371 1.00672 1.45541 1.09884 1.05297 1.78414 1.16052 0.85613 0.80434 0.78050 1.90895 1.11746 1.86632 1.58410 1.45148 1.09502 1.04186 1.81947 1.19978 0.91895 0.79303 1.03336 1.20147 0.98269 0.97375 0.93355 1.21060 0.96396 0.95594 0.98180 1.21036 0.97276 0.96513 0.96565 1.17633 0.96024 0.93300 0.94668 1.21500 1.00794 0.98250 0.84671 1.23348 0.97778 0.94975 1.00219 1.70371 1.19768 1.20921 1.10351 1.28186 0.94059 0.91787 0.91193 1.84483 1.48003 1.39859 1.36172 1.21252 0.97037 0.96332 0.97199 1.21100 0.96415 0.95627 0.98224 0.92871 0.95969 0.95953 0.92750 0.92763 0.77360 0.77116 0.90695 0.90648 0.84694 0.85055 0.79597 0.73211 0.85246 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16 11 N -0.74 -12.90 5.56 -65.23 -0.36 -13.27 16 12 C 0.70 11.94 8.57 -86.92 -0.74 11.19 16 13 O -0.60 -12.64 16.34 5.29 0.09 -12.56 16 14 N -0.75 -9.06 5.55 -66.41 -0.37 -9.43 16 15 C 0.18 1.84 5.79 -5.19 -0.03 1.81 16 16 C -0.09 -0.74 5.25 -104.54 -0.55 -1.29 16 17 C -0.09 -0.68 9.68 -39.64 -0.38 -1.06 16 18 C -0.10 -0.65 9.57 -39.18 -0.38 -1.03 16 19 C -0.02 -0.12 5.87 -104.98 -0.62 -0.74 16 20 C 0.00 0.01 7.07 -36.54 -0.26 -0.25 16 21 C -0.02 -0.19 11.29 -17.43 -0.20 -0.39 16 22 N -0.49 -4.27 11.27 -14.68 -0.17 -4.43 16 23 C 0.17 1.08 13.22 52.14 0.69 1.77 16 24 O -0.20 -1.59 10.59 4.25 0.04 -1.54 16 25 C -0.10 -0.77 9.73 -39.19 -0.38 -1.16 16 26 C -0.10 -0.73 9.68 -39.64 -0.38 -1.12 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.39 5.90 8.49 -40.82 -0.35 5.56 16 33 H 0.40 3.88 8.48 -40.82 -0.35 3.53 16 34 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 36 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.61 7.04 -52.48 -0.37 0.24 16 38 H 0.19 1.03 7.30 -52.48 -0.38 0.65 16 39 H 0.25 0.29 8.06 -52.49 -0.42 -0.14 16 40 H 0.13 0.88 7.95 -52.48 -0.42 0.46 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -35.08 362.67 -8.59 -43.68 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.20 Total: 3.44 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -3.81 Total: -2.34 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.16 Total: -52.49 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.13 Total: -14.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.08 -8.59 -43.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906605285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.970 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds