Wall clock time and date at job start Tue Mar 31 2020 10:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99884 * 2 1 4 4 H 1.48501 * 109.47229 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47201 * 30.00085 * 3 2 1 6 6 H 1.48501 * 109.47274 * 150.00006 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47327 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47428 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00211 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00048 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99940 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47148 * 179.72251 * 15 14 12 17 17 C 1.38358 * 119.85428 * 269.72402 * 16 15 14 18 18 C 1.37959 * 120.14715 * 179.76824 * 17 16 15 19 19 C 1.39576 * 119.84933 * 0.50557 * 18 17 16 20 20 C 1.47828 * 120.14332 * 179.72371 * 19 18 17 21 21 C 1.35771 * 126.58086 * 359.73811 * 20 19 18 22 22 N 1.34138 * 107.51489 * 179.89584 * 21 20 19 23 23 C 1.30364 * 108.90259 * 0.37038 * 22 21 20 24 24 O 1.33997 * 109.03299 * 359.76692 * 23 22 21 25 25 C 1.39568 * 119.71256 * 359.74535 * 19 18 17 26 26 C 1.37961 * 119.85599 * 0.02562 * 25 19 18 27 27 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47519 * 59.99714 * 9 7 2 29 29 H 1.09001 * 109.46880 * 299.99708 * 9 7 2 30 30 H 1.08998 * 109.47065 * 59.99424 * 10 9 7 31 31 H 1.09001 * 109.46892 * 299.99688 * 10 9 7 32 32 H 0.97004 * 119.99747 * 0.02562 * 11 10 9 33 33 H 0.97005 * 120.00161 * 359.72198 * 14 12 11 34 34 H 1.09001 * 109.46512 * 299.72412 * 15 14 12 35 35 H 1.08998 * 109.47174 * 59.71534 * 15 14 12 36 36 H 1.08002 * 119.92086 * 0.02562 * 17 16 15 37 37 H 1.08004 * 120.07625 * 180.27370 * 18 17 16 38 38 H 1.08004 * 126.24768 * 0.02562 * 21 20 19 39 39 H 1.08001 * 125.48192 * 179.73038 * 23 22 21 40 40 H 1.08005 * 120.07713 * 179.97438 * 25 19 18 41 41 H 1.07995 * 119.92872 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 2.1867 -6.0980 0.0031 13 8 3.4026 -6.0980 0.0036 14 7 1.5129 -7.2652 0.0031 15 6 2.2454 -8.5340 0.0044 16 6 1.2661 -9.6794 0.0110 17 6 0.8270 -10.2031 1.2140 18 6 -0.0731 -11.2485 1.2272 19 6 -0.5326 -11.7848 0.0233 20 6 -1.4924 -12.9091 0.0299 21 6 -2.0100 -13.5248 1.1237 22 7 -2.8381 -14.4873 0.6911 23 6 -2.8400 -14.4884 -0.6125 24 8 -2.0187 -13.5249 -1.0515 25 6 -0.0817 -11.2553 -1.1867 26 6 0.8148 -10.2066 -1.1859 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5572 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6039 0.8922 31 1 2.8726 -3.6048 -0.8877 32 1 0.5428 -4.9308 0.0016 33 1 0.5428 -7.2652 0.0068 34 1 2.8690 -8.5942 -0.8876 35 1 2.8751 -8.5890 0.8923 36 1 1.1866 -9.7898 2.1448 37 1 -0.4185 -11.6536 2.1670 38 1 -1.7958 -13.2823 2.1541 39 1 -3.4112 -15.1584 -1.2380 40 1 -0.4331 -11.6660 -2.1217 41 1 1.1649 -9.7963 -2.1215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906605285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:33 Heat of formation + Delta-G solvation = -16.473844 kcal Electronic energy + Delta-G solvation = -23649.328554 eV Core-core repulsion = 19915.465609 eV Total energy + Delta-G solvation = -3733.862944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.28367 -41.11045 -40.18246 -36.80882 -35.98203 -35.81632 -34.80727 -33.51977 -32.05525 -31.51561 -30.07258 -27.35729 -26.18800 -24.44259 -23.75229 -22.87935 -22.79334 -21.96556 -21.81684 -19.55431 -19.06763 -18.41172 -17.60857 -17.50982 -17.09426 -16.89016 -16.49534 -16.27128 -16.23708 -15.34545 -15.23941 -15.10058 -14.99942 -14.72560 -14.39799 -14.26885 -14.01851 -13.75409 -13.61610 -13.19482 -12.91544 -12.51889 -12.46469 -12.45705 -12.21952 -12.06760 -11.68023 -11.61717 -11.50790 -11.26983 -10.85510 -10.59293 -10.34544 -10.00155 -9.70561 -9.11799 -8.22724 -6.32853 -0.47925 0.37120 0.84817 1.43206 1.43618 1.55080 1.67371 1.69379 1.89544 2.18431 2.42635 2.77629 3.12191 3.35230 3.47475 3.53064 3.67125 3.85735 3.96762 4.02388 4.23577 4.35857 4.48855 4.54433 4.59728 4.63865 4.72662 4.80491 4.87028 4.89184 5.05169 5.29078 5.31787 5.32963 5.42103 5.45726 5.53566 5.54663 5.61495 5.80461 5.83837 6.05455 6.18824 6.65403 6.80517 7.13445 7.36479 7.60942 8.89113 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.001753 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.124789 B =15973.091982 C =16493.409432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.161 3.839 11 N -0.734 5.734 12 C 0.699 3.301 13 O -0.639 6.639 14 N -0.729 5.729 15 C 0.181 3.819 16 C -0.096 4.096 17 C -0.093 4.093 18 C -0.095 4.095 19 C -0.020 4.020 20 C -0.019 4.019 21 C -0.028 4.028 22 N -0.523 5.523 23 C 0.187 3.813 24 O -0.210 6.210 25 C -0.108 4.108 26 C -0.096 4.096 27 H 0.265 0.735 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.407 0.593 33 H 0.409 0.591 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.204 0.796 39 H 0.295 0.705 40 H 0.135 0.865 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -30.547 -0.609 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.399 3.601 13 O -0.521 6.521 14 N -0.386 5.386 15 C 0.057 3.943 16 C -0.097 4.097 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.021 4.021 20 C -0.072 4.072 21 C -0.167 4.167 22 N -0.251 5.251 23 C -0.037 4.037 24 O -0.097 6.097 25 C -0.126 4.126 26 C -0.115 4.115 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.242 0.758 33 H 0.245 0.755 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.221 0.779 39 H 0.309 0.691 40 H 0.153 0.847 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.006 -30.838 -0.290 31.243 hybrid contribution -0.303 1.336 -0.510 1.462 sum -5.309 -29.501 -0.800 29.986 Atomic orbital electron populations 1.70057 1.07522 1.27956 1.51081 1.25866 0.95798 1.03078 0.94453 0.85442 0.78636 0.78456 0.78493 1.19804 1.20567 1.19042 1.21478 0.93640 0.91913 1.51432 0.92243 1.19140 0.94275 0.91698 0.96373 1.21068 0.94585 0.81080 0.99649 1.45228 1.10398 1.04463 1.78759 1.16136 0.85098 0.81182 0.77711 1.90868 1.13684 1.87309 1.60258 1.45001 1.10202 1.03316 1.80065 1.20033 0.92315 0.78907 1.03008 1.19939 0.98592 0.97096 0.94061 1.21214 0.96122 0.95509 0.98275 1.21265 0.96765 0.96100 0.97186 1.17809 0.95923 0.93258 0.95132 1.21612 1.01671 0.98958 0.84913 1.23701 0.97310 0.94603 1.01083 1.70397 1.21021 1.21968 1.11723 1.29222 0.92568 0.90821 0.91132 1.84489 1.48431 1.40355 1.36393 1.21351 0.97211 0.96464 0.97598 1.21174 0.96294 0.95608 0.98404 0.92583 0.97311 0.97264 0.93768 0.93805 0.75813 0.75469 0.91197 0.90879 0.83506 0.82935 0.77922 0.69054 0.84713 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.20 13.29 21.45 0.28 -53.91 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.55 -30.51 9.11 25.60 0.23 -30.28 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.16 6.95 5.61 86.38 0.48 7.43 16 11 N -0.73 -25.46 5.56 -478.54 -2.66 -28.12 16 12 C 0.70 23.55 8.57 179.06 1.53 25.09 16 13 O -0.64 -27.07 16.34 -3.99 -0.07 -27.14 16 14 N -0.73 -16.81 5.55 -482.30 -2.68 -19.49 16 15 C 0.18 3.56 5.79 85.63 0.50 4.05 16 16 C -0.10 -1.45 5.25 -19.81 -0.10 -1.55 16 17 C -0.09 -1.18 9.68 22.23 0.22 -0.97 16 18 C -0.10 -1.14 9.57 22.53 0.22 -0.92 16 19 C -0.02 -0.30 5.87 -20.10 -0.12 -0.42 16 20 C -0.02 -0.29 7.07 24.24 0.17 -0.12 16 21 C -0.03 -0.42 11.29 83.77 0.95 0.53 16 22 N -0.52 -8.48 11.27 -315.08 -3.55 -12.03 16 23 C 0.19 1.98 13.22 130.46 1.72 3.71 16 24 O -0.21 -3.08 10.59 -7.72 -0.08 -3.16 16 25 C -0.11 -1.57 9.73 22.53 0.22 -1.35 16 26 C -0.10 -1.38 9.68 22.23 0.22 -1.17 16 27 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.41 11.93 8.49 -92.71 -0.79 11.15 16 33 H 0.41 7.36 8.48 -92.70 -0.79 6.58 16 34 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 35 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 36 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.15 1.08 7.04 -2.91 -0.02 1.06 16 38 H 0.20 1.94 7.30 -2.91 -0.02 1.92 16 39 H 0.29 -0.19 8.06 -2.91 -0.02 -0.22 16 40 H 0.13 1.73 7.95 -2.91 -0.02 1.70 16 41 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -75.26 362.67 -0.38 -75.64 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.50 Total: 16.45 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 6.85 Total: 6.17 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -8.60 Total: -113.55 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.15 Total: -30.29 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -75.26 -0.38 -75.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906605285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.166 kcal (2) G-P(sol) polarization free energy of solvation -75.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds