Wall clock time and date at job start Tue Mar 31 2020 10:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47508 * 270.00375 * 3 2 1 5 5 H 1.48503 * 109.47178 * 30.00512 * 3 2 1 6 6 H 1.48503 * 109.46998 * 150.00198 * 3 2 1 7 7 C 1.37872 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00357 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99933 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47269 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47086 * 180.02562 * 10 9 7 12 12 O 1.45206 * 109.46825 * 179.97438 * 11 10 9 13 13 C 1.34755 * 116.99856 * 180.02562 * 12 11 10 14 14 O 1.21518 * 119.99817 * 359.97438 * 13 12 11 15 15 C 1.47378 * 119.99812 * 179.97438 * 13 12 11 16 16 C 1.36668 * 125.78024 * 179.97438 * 15 13 12 17 17 N 1.34784 * 106.83741 * 179.73707 * 16 15 13 18 18 C 1.46500 * 126.58671 * 180.23977 * 17 16 15 19 19 C 1.50705 * 109.46576 * 125.00421 * 18 17 16 20 20 C 1.38232 * 119.99907 * 269.72443 * 19 18 17 21 21 C 1.38240 * 119.99639 * 179.76865 * 20 19 18 22 22 C 1.38235 * 119.99972 * 0.51154 * 21 20 19 23 23 C 1.38229 * 120.00230 * 359.74564 * 22 21 20 24 24 C 1.38235 * 119.99842 * 90.00461 * 19 18 17 25 25 N 1.40209 * 106.82741 * 0.24874 * 17 16 15 26 26 N 1.28756 * 108.38331 * 359.97438 * 25 17 16 27 27 H 0.97006 * 120.00115 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47424 * 60.00299 * 9 7 2 29 29 H 1.08998 * 109.47506 * 300.00265 * 9 7 2 30 30 H 1.08996 * 109.47522 * 59.99592 * 10 9 7 31 31 H 1.09007 * 109.46700 * 300.00112 * 10 9 7 32 32 H 1.08998 * 109.47342 * 60.00311 * 11 10 9 33 33 H 1.08993 * 109.47137 * 299.99533 * 11 10 9 34 34 H 1.08002 * 126.58419 * 0.02562 * 16 15 13 35 35 H 1.08994 * 109.47273 * 245.00311 * 18 17 16 36 36 H 1.08997 * 109.47167 * 5.00809 * 18 17 16 37 37 H 1.07999 * 120.00142 * 0.02562 * 20 19 18 38 38 H 1.07998 * 119.99925 * 180.23020 * 21 20 19 39 39 H 1.08004 * 119.99652 * 179.72168 * 22 21 20 40 40 H 1.08002 * 120.00305 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00337 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5515 -2.6364 -0.0022 12 8 6.0355 -4.0054 -0.0027 13 6 7.3715 -4.1820 -0.0022 14 8 8.1117 -3.2182 -0.0018 15 6 7.9348 -5.5438 -0.0021 16 6 9.2648 -5.8585 -0.0021 17 7 9.3477 -7.2037 0.0040 18 6 10.5755 -8.0029 0.0112 19 6 10.5482 -8.9550 1.1791 20 6 11.0736 -8.5689 2.3980 21 6 11.0442 -9.4405 3.4706 22 6 10.4989 -10.7020 3.3213 23 6 9.9783 -11.0900 2.1010 24 6 10.0029 -10.2164 1.0298 25 7 8.0332 -7.6915 0.0018 26 7 7.2274 -6.6872 -0.0046 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6804 0.8889 29 1 3.8745 -0.6799 -0.8911 30 1 3.6579 -3.1498 -0.8924 31 1 3.6585 -3.1509 0.8876 32 1 5.9148 -2.1234 0.8882 33 1 5.9149 -2.1219 -0.8918 34 1 10.0908 -5.1627 -0.0018 35 1 10.6461 -8.5690 -0.9175 36 1 11.4382 -7.3427 0.1008 37 1 11.5033 -7.5848 2.5135 38 1 11.4513 -9.1375 4.4239 39 1 10.4800 -11.3845 4.1581 40 1 9.5527 -12.0757 1.9842 41 1 9.5962 -10.5196 0.0764 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914901081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:50 Heat of formation + Delta-G solvation = 29.929830 kcal Electronic energy + Delta-G solvation = -23907.614250 eV Core-core repulsion = 20175.763519 eV Total energy + Delta-G solvation = -3731.850730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.51873 -40.02511 -39.72200 -36.49596 -35.50286 -34.01148 -32.12479 -31.85012 -31.46824 -31.09397 -27.85034 -27.28414 -24.52793 -23.21790 -23.10748 -22.59603 -21.80407 -20.73724 -20.16350 -18.38359 -17.37634 -17.07296 -16.70003 -16.63505 -16.17544 -16.14398 -15.64748 -15.35090 -15.02834 -14.21499 -14.15712 -13.97896 -13.77424 -13.50662 -13.22331 -13.08884 -12.71095 -12.39163 -12.31396 -11.89266 -11.86977 -11.63231 -11.45108 -11.02065 -10.91383 -10.74658 -10.72832 -10.40099 -9.98698 -9.77148 -9.68956 -9.62076 -9.46500 -9.43934 -9.19776 -8.52563 -6.02514 -4.01203 0.52821 0.79555 0.86937 1.41322 1.76477 2.74230 2.96904 3.24985 3.32967 3.40273 3.43898 3.73160 3.95218 3.99737 4.39419 4.42204 4.45146 4.46736 4.56834 4.63333 4.69511 4.90525 4.95479 5.09534 5.30681 5.35787 5.43278 5.48034 5.51392 5.53085 5.87633 5.91416 5.92213 5.94225 5.98127 6.35601 6.40890 6.46301 6.67012 6.85067 7.27497 7.38163 7.60186 7.77515 7.90952 8.55000 9.02612 9.58925 11.10702 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028599 B = 0.001926 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.828519 B =14535.415572 C =14821.304171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.102 4.102 11 C 0.066 3.934 12 O -0.335 6.335 13 C 0.553 3.447 14 O -0.511 6.511 15 C -0.082 4.082 16 C 0.098 3.902 17 N -0.359 5.359 18 C 0.165 3.835 19 C -0.122 4.122 20 C -0.097 4.097 21 C -0.124 4.124 22 C -0.104 4.104 23 C -0.122 4.122 24 C -0.081 4.081 25 N -0.055 5.055 26 N -0.178 5.178 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.208 0.792 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.008 -21.763 3.010 37.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.093 0.907 9 C -0.048 4.048 10 C -0.140 4.140 11 C -0.007 4.007 12 O -0.250 6.250 13 C 0.395 3.605 14 O -0.400 6.400 15 C -0.219 4.219 16 C -0.058 4.058 17 N -0.143 5.143 18 C 0.045 3.955 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.142 4.142 22 C -0.123 4.123 23 C -0.140 4.140 24 C -0.100 4.100 25 N -0.036 5.036 26 N -0.052 5.052 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.225 0.775 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 29.186 -22.575 2.992 37.019 hybrid contribution 1.119 1.866 0.041 2.176 sum 30.305 -20.710 3.034 36.831 Atomic orbital electron populations 1.69912 1.06272 1.26904 1.50979 1.25020 0.94763 0.99160 0.94548 0.86780 0.80381 0.83600 0.78553 1.20236 1.21336 1.18962 1.21070 0.89071 0.94692 1.50983 0.90740 1.19525 0.97523 0.91073 0.96652 1.21569 0.88602 1.00716 1.03094 1.23581 0.97234 0.77662 1.02209 1.86658 1.21561 1.34226 1.82526 1.19405 0.81896 0.86461 0.72765 1.90860 1.60958 1.41033 1.47105 1.20387 0.90155 0.92460 1.18926 1.23331 0.99156 0.85778 0.97545 1.50659 1.09112 1.05050 1.49517 1.20906 0.82236 0.93405 0.98960 1.19645 1.02705 0.95194 0.94700 1.21076 0.98671 0.99539 0.92276 1.21172 1.00067 0.94118 0.98806 1.21307 0.96998 0.96361 0.97600 1.21216 0.99706 1.00060 0.92996 1.21101 0.96524 0.92813 0.99530 1.82098 0.82324 1.17257 1.21880 1.74863 1.25612 0.96515 1.08243 0.92696 0.96261 0.96699 0.91378 0.91371 0.91315 0.91297 0.77521 0.87259 0.86679 0.85852 0.85633 0.85703 0.85501 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -2.12 5.53 -26.73 -0.15 -2.27 16 11 C 0.07 1.20 5.48 37.16 0.20 1.40 16 12 O -0.34 -5.99 10.23 -40.64 -0.42 -6.41 16 13 C 0.55 8.82 7.96 34.45 0.27 9.09 16 14 O -0.51 -8.57 16.65 -19.28 -0.32 -8.89 16 15 C -0.08 -1.11 7.02 -83.57 -0.59 -1.70 16 16 C 0.10 0.88 11.27 -16.82 -0.19 0.69 16 17 N -0.36 -3.04 3.68 -62.23 -0.23 -3.27 16 18 C 0.16 0.71 6.67 -5.19 -0.03 0.67 16 19 C -0.12 -0.72 5.33 -104.62 -0.56 -1.27 16 20 C -0.10 -0.56 9.70 -39.58 -0.38 -0.94 16 21 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16 22 C -0.10 -0.60 10.05 -39.59 -0.40 -1.00 16 23 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 24 C -0.08 -0.51 9.70 -39.58 -0.38 -0.89 16 25 N -0.05 -0.68 13.63 60.35 0.82 0.14 16 26 N -0.18 -2.66 12.39 32.83 0.41 -2.25 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 29 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 30 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.11 0.29 8.08 -51.93 -0.42 -0.13 16 36 H 0.12 0.12 8.02 -51.93 -0.42 -0.29 16 37 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.12 0.49 8.06 -52.48 -0.42 0.06 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -35.96 364.82 -7.09 -43.06 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -5.42 Total: -5.40 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -3.54 Total: -12.37 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 1.77 Total: -32.76 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.74 Total: -15.30 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.96 -7.09 -43.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914901081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.987 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds