Wall clock time and date at job start Tue Mar 31 2020 10:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47508 * 270.00375 * 3 2 1 5 5 H 1.48503 * 109.47178 * 30.00512 * 3 2 1 6 6 H 1.48503 * 109.46998 * 150.00198 * 3 2 1 7 7 C 1.37872 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00357 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99933 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47269 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47086 * 180.02562 * 10 9 7 12 12 O 1.45206 * 109.46825 * 179.97438 * 11 10 9 13 13 C 1.34755 * 116.99856 * 180.02562 * 12 11 10 14 14 O 1.21518 * 119.99817 * 359.97438 * 13 12 11 15 15 C 1.47378 * 119.99812 * 179.97438 * 13 12 11 16 16 C 1.36668 * 125.78024 * 179.97438 * 15 13 12 17 17 N 1.34784 * 106.83741 * 179.73707 * 16 15 13 18 18 C 1.46500 * 126.58671 * 180.23977 * 17 16 15 19 19 C 1.50705 * 109.46576 * 125.00421 * 18 17 16 20 20 C 1.38232 * 119.99907 * 269.72443 * 19 18 17 21 21 C 1.38240 * 119.99639 * 179.76865 * 20 19 18 22 22 C 1.38235 * 119.99972 * 0.51154 * 21 20 19 23 23 C 1.38229 * 120.00230 * 359.74564 * 22 21 20 24 24 C 1.38235 * 119.99842 * 90.00461 * 19 18 17 25 25 N 1.40209 * 106.82741 * 0.24874 * 17 16 15 26 26 N 1.28756 * 108.38331 * 359.97438 * 25 17 16 27 27 H 0.97006 * 120.00115 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47424 * 60.00299 * 9 7 2 29 29 H 1.08998 * 109.47506 * 300.00265 * 9 7 2 30 30 H 1.08996 * 109.47522 * 59.99592 * 10 9 7 31 31 H 1.09007 * 109.46700 * 300.00112 * 10 9 7 32 32 H 1.08998 * 109.47342 * 60.00311 * 11 10 9 33 33 H 1.08993 * 109.47137 * 299.99533 * 11 10 9 34 34 H 1.08002 * 126.58419 * 0.02562 * 16 15 13 35 35 H 1.08994 * 109.47273 * 245.00311 * 18 17 16 36 36 H 1.08997 * 109.47167 * 5.00809 * 18 17 16 37 37 H 1.07999 * 120.00142 * 0.02562 * 20 19 18 38 38 H 1.07998 * 119.99925 * 180.23020 * 21 20 19 39 39 H 1.08004 * 119.99652 * 179.72168 * 22 21 20 40 40 H 1.08002 * 120.00305 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00337 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5515 -2.6364 -0.0022 12 8 6.0355 -4.0054 -0.0027 13 6 7.3715 -4.1820 -0.0022 14 8 8.1117 -3.2182 -0.0018 15 6 7.9348 -5.5438 -0.0021 16 6 9.2648 -5.8585 -0.0021 17 7 9.3477 -7.2037 0.0040 18 6 10.5755 -8.0029 0.0112 19 6 10.5482 -8.9550 1.1791 20 6 11.0736 -8.5689 2.3980 21 6 11.0442 -9.4405 3.4706 22 6 10.4989 -10.7020 3.3213 23 6 9.9783 -11.0900 2.1010 24 6 10.0029 -10.2164 1.0298 25 7 8.0332 -7.6915 0.0018 26 7 7.2274 -6.6872 -0.0046 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6804 0.8889 29 1 3.8745 -0.6799 -0.8911 30 1 3.6579 -3.1498 -0.8924 31 1 3.6585 -3.1509 0.8876 32 1 5.9148 -2.1234 0.8882 33 1 5.9149 -2.1219 -0.8918 34 1 10.0908 -5.1627 -0.0018 35 1 10.6461 -8.5690 -0.9175 36 1 11.4382 -7.3427 0.1008 37 1 11.5033 -7.5848 2.5135 38 1 11.4513 -9.1375 4.4239 39 1 10.4800 -11.3845 4.1581 40 1 9.5527 -12.0757 1.9842 41 1 9.5962 -10.5196 0.0764 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914901081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:49 Heat of formation + Delta-G solvation = 7.758142 kcal Electronic energy + Delta-G solvation = -23908.575686 eV Core-core repulsion = 20175.763519 eV Total energy + Delta-G solvation = -3732.812167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.34923 -41.22803 -40.16855 -37.83334 -36.13686 -35.89031 -33.86779 -32.73080 -32.00903 -31.83289 -29.48327 -27.98545 -25.82004 -24.33220 -23.70885 -23.53808 -22.42127 -22.07527 -21.59991 -19.28815 -19.00134 -18.04215 -17.92028 -17.65942 -17.08925 -16.95710 -16.29210 -16.09223 -16.01129 -15.79519 -15.51541 -14.81038 -14.68982 -14.36613 -14.26920 -13.93147 -13.87265 -13.69493 -13.56771 -13.17372 -12.84625 -12.58336 -12.44187 -12.23875 -12.16191 -12.02056 -11.94053 -11.75009 -11.63481 -11.40669 -11.39131 -11.34646 -10.76249 -10.48757 -9.88333 -9.86613 -8.28729 -6.34195 -0.03887 0.15267 0.38704 0.45657 1.14989 1.38470 1.40413 1.52505 1.61997 1.89013 2.37549 2.82304 3.06133 3.10533 3.28571 3.63782 3.71720 3.81661 4.00237 4.02699 4.03033 4.07553 4.23673 4.30024 4.36398 4.39965 4.50426 4.57358 4.70780 4.75545 4.78470 4.96108 4.98708 5.09513 5.26451 5.34182 5.47986 5.48116 5.50344 5.52337 5.57684 5.63246 6.02602 6.27250 6.50739 6.73532 6.89915 7.30003 8.88025 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028599 B = 0.001926 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.828519 B =14535.415572 C =14821.304171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.536 4.536 8 H 0.031 0.969 9 C -0.007 4.007 10 C -0.095 4.095 11 C 0.075 3.925 12 O -0.353 6.353 13 C 0.554 3.446 14 O -0.522 6.522 15 C -0.117 4.117 16 C 0.132 3.868 17 N -0.343 5.343 18 C 0.156 3.844 19 C -0.131 4.131 20 C -0.105 4.105 21 C -0.138 4.138 22 C -0.116 4.116 23 C -0.137 4.137 24 C -0.097 4.097 25 N -0.076 5.076 26 N -0.219 5.219 27 H 0.267 0.733 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.253 0.747 35 H 0.128 0.872 36 H 0.159 0.841 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.906 -20.855 3.014 39.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.045 4.045 10 C -0.132 4.132 11 C 0.002 3.998 12 O -0.268 6.268 13 C 0.398 3.602 14 O -0.411 6.411 15 C -0.254 4.254 16 C -0.026 4.026 17 N -0.126 5.126 18 C 0.038 3.962 19 C -0.131 4.131 20 C -0.123 4.123 21 C -0.155 4.155 22 C -0.134 4.134 23 C -0.155 4.155 24 C -0.115 4.115 25 N -0.057 5.057 26 N -0.093 5.093 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.269 0.731 35 H 0.146 0.854 36 H 0.177 0.823 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 33.112 -21.723 2.995 39.715 hybrid contribution -0.046 1.384 0.066 1.386 sum 33.066 -20.339 3.061 38.941 Atomic orbital electron populations 1.70074 1.08386 1.28274 1.52397 1.26064 0.95705 1.03732 0.93961 0.85606 0.79570 0.77806 0.79372 1.18955 1.20930 1.16608 1.21415 0.91846 0.93291 1.50835 0.95039 1.19441 0.94170 0.93389 0.97465 1.21335 0.91042 0.98556 1.02313 1.23293 0.94983 0.78323 1.03178 1.86634 1.23312 1.33735 1.83114 1.19722 0.80889 0.87533 0.72087 1.90838 1.60722 1.41587 1.47906 1.20400 0.91873 0.91067 1.22066 1.23929 0.98400 0.86236 0.94018 1.50961 1.09001 1.05322 1.47313 1.21454 0.81517 0.94004 0.99184 1.19830 1.02620 0.95280 0.95419 1.21392 0.98455 1.00389 0.92100 1.21476 1.00132 0.94239 0.99692 1.21575 0.96915 0.96923 0.98010 1.21459 1.00050 1.00732 0.93288 1.21321 0.96888 0.93494 0.99837 1.82007 0.84058 1.17017 1.22576 1.74840 1.27351 0.97447 1.09709 0.92409 0.95276 0.95360 0.92215 0.92297 0.90378 0.90231 0.73072 0.85413 0.82349 0.83877 0.84287 0.84413 0.84602 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.80 13.96 21.44 0.30 -60.50 16 2 C 0.00 0.12 5.47 84.65 0.46 0.59 16 3 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 7 C -0.54 -31.77 9.66 25.60 0.25 -31.52 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 9 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 10 C -0.09 -3.94 5.53 30.59 0.17 -3.77 16 11 C 0.08 2.64 5.48 71.98 0.39 3.03 16 12 O -0.35 -12.49 10.23 -56.66 -0.58 -13.07 16 13 C 0.55 17.03 7.96 70.23 0.56 17.59 16 14 O -0.52 -16.36 16.65 19.78 0.33 -16.03 16 15 C -0.12 -2.99 7.02 40.78 0.29 -2.71 16 16 C 0.13 1.92 11.27 83.87 0.95 2.87 16 17 N -0.34 -4.81 3.68 -350.79 -1.29 -6.10 16 18 C 0.16 0.76 6.67 85.63 0.57 1.33 16 19 C -0.13 -1.25 5.33 -19.86 -0.11 -1.35 16 20 C -0.10 -0.96 9.70 22.27 0.22 -0.74 16 21 C -0.14 -1.39 10.05 22.27 0.22 -1.17 16 22 C -0.12 -1.25 10.05 22.27 0.22 -1.02 16 23 C -0.14 -1.58 10.05 22.27 0.22 -1.36 16 24 C -0.10 -1.12 9.70 22.27 0.22 -0.90 16 25 N -0.08 -1.82 13.63 37.02 0.50 -1.32 16 26 N -0.22 -6.52 12.39 -50.04 -0.62 -7.14 16 27 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 28 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 29 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 30 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.25 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.13 0.23 8.08 -2.39 -0.02 0.21 16 36 H 0.16 -0.55 8.02 -2.39 -0.02 -0.56 16 37 H 0.14 0.65 8.06 -2.91 -0.02 0.62 16 38 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.13 1.31 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -80.99 364.82 6.26 -74.73 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 0.98 Total: 2.35 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 4.75 Total: -19.36 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -1.11 Total: -75.06 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.25 Total: -29.10 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -80.99 6.26 -74.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914901081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.485 kcal (2) G-P(sol) polarization free energy of solvation -80.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds