Wall clock time and date at job start Tue Mar 31 2020 10:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 120.00112 * 2 1 4 4 H 1.48495 * 109.47198 * 269.99847 * 3 2 1 5 5 H 1.48499 * 109.46687 * 29.99779 * 3 2 1 6 6 H 1.48496 * 109.46906 * 149.99758 * 3 2 1 7 7 C 1.37879 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99451 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46824 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99926 * 179.97438 * 10 9 7 12 12 O 1.21661 * 120.00142 * 0.02562 * 11 10 9 13 13 C 1.46735 * 119.99933 * 180.02562 * 11 10 9 14 14 N 1.29693 * 119.54670 * 359.72864 * 13 11 10 15 15 N 1.39863 * 121.13734 * 180.38187 * 14 13 11 16 16 C 1.46503 * 119.79578 * 199.19627 * 15 14 13 17 17 C 1.50706 * 109.46801 * 269.98118 * 16 15 14 18 18 C 1.38239 * 119.99569 * 269.72672 * 17 16 15 19 19 C 1.38235 * 119.99550 * 179.77309 * 18 17 16 20 20 C 1.38233 * 119.99858 * 0.50055 * 19 18 17 21 21 C 1.38233 * 120.00130 * 359.75456 * 20 19 18 22 22 C 1.38226 * 120.00102 * 359.97438 * 21 20 19 23 23 C 1.34747 * 120.40475 * 19.17546 * 15 14 13 24 24 O 1.21250 * 120.11917 * 179.70373 * 23 15 14 25 25 C 1.50767 * 119.75592 * 359.72660 * 23 15 14 26 26 C 1.50546 * 119.54704 * 180.02562 * 13 11 10 27 27 H 0.97002 * 119.99649 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47471 * 59.99946 * 9 7 2 29 29 H 1.08999 * 109.47226 * 299.99471 * 9 7 2 30 30 H 0.97001 * 119.99516 * 0.02562 * 10 9 7 31 31 H 1.08997 * 109.47207 * 29.97679 * 16 15 14 32 32 H 1.08997 * 109.46682 * 149.97860 * 16 15 14 33 33 H 1.07996 * 120.00319 * 359.97438 * 18 17 16 34 34 H 1.07997 * 120.00142 * 180.23003 * 19 18 17 35 35 H 1.08002 * 119.99860 * 179.72695 * 20 19 18 36 36 H 1.08004 * 120.00008 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.00426 * 179.97438 * 22 21 20 38 38 H 1.09005 * 109.51473 * 206.81528 * 25 23 15 39 39 H 1.09003 * 109.55856 * 86.68864 * 25 23 15 40 40 H 1.09003 * 109.44798 * 265.58802 * 26 13 11 41 41 H 1.09002 * 109.44993 * 25.50745 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5576 -5.1057 0.0011 13 6 2.7073 -5.9987 0.0016 14 7 3.9805 -5.7516 -0.0037 15 7 4.9185 -6.7890 -0.0114 16 6 6.2993 -6.5250 0.4009 17 6 7.1129 -6.1176 -0.8005 18 6 7.7697 -7.0771 -1.5481 19 6 8.5121 -6.7039 -2.6528 20 6 8.6063 -5.3701 -3.0037 21 6 7.9539 -4.4102 -2.2529 22 6 7.2069 -4.7839 -1.1516 23 6 4.5598 -8.0299 -0.3951 24 8 5.3785 -8.9242 -0.4049 25 6 3.1369 -8.3020 -0.8128 26 6 2.1943 -7.4140 0.0016 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 3.1567 -3.4354 0.0009 31 1 6.3113 -5.7215 1.1373 32 1 6.7260 -7.4268 0.8399 33 1 7.7000 -8.1186 -1.2711 34 1 9.0222 -7.4538 -3.2391 35 1 9.1900 -5.0781 -3.8642 36 1 8.0278 -3.3681 -2.5269 37 1 6.6974 -4.0339 -0.5647 38 1 2.8981 -9.3499 -0.6309 39 1 3.0193 -8.0806 -1.8736 40 1 2.1445 -7.7820 1.0264 41 1 1.1987 -7.4392 -0.4414 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916161202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:02 Heat of formation + Delta-G solvation = -7.464229 kcal Electronic energy + Delta-G solvation = -25478.486488 eV Core-core repulsion = 21745.014229 eV Total energy + Delta-G solvation = -3733.472258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91847 -39.31341 -38.91969 -37.05093 -34.74688 -34.36108 -32.56759 -31.83423 -31.05964 -30.98152 -27.65158 -27.00957 -24.98722 -24.00796 -22.72052 -22.32922 -21.49993 -20.41292 -18.51634 -17.77735 -17.33361 -16.79004 -16.41864 -16.03266 -15.45570 -15.34552 -15.19594 -15.04969 -14.67078 -14.42247 -14.28477 -13.52278 -13.42581 -13.38617 -13.16048 -12.71610 -12.57557 -12.49465 -12.31815 -12.01724 -11.84667 -11.68533 -11.22263 -11.09596 -11.04748 -10.95804 -10.90820 -10.39189 -9.94848 -9.49996 -9.39740 -9.00715 -8.98716 -8.83601 -8.77319 -8.02521 -6.21532 -4.28518 0.99560 1.07783 1.31826 2.18192 2.32812 3.22318 3.28657 3.30762 3.52882 3.56734 3.71925 3.96289 4.30493 4.39502 4.60058 4.67605 4.73161 4.86504 4.90466 4.96035 5.04311 5.15319 5.16038 5.28092 5.37787 5.46065 5.51498 5.53682 5.64075 5.85199 5.95099 5.99581 6.06280 6.34610 6.41155 6.49397 6.88490 7.16290 7.22002 7.40841 7.47349 7.58722 7.81384 7.89577 8.45265 8.63802 8.88450 9.37803 10.88617 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.003927 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.791855 B = 7128.009169 C = 9259.515363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.246 3.754 10 N -0.682 5.682 11 C 0.555 3.445 12 O -0.539 6.539 13 C 0.093 3.907 14 N -0.212 5.212 15 N -0.452 5.452 16 C 0.175 3.825 17 C -0.113 4.113 18 C -0.098 4.098 19 C -0.129 4.129 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.090 4.090 23 C 0.498 3.502 24 O -0.522 6.522 25 C -0.142 4.142 26 C -0.108 4.108 27 H 0.267 0.733 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.401 0.599 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.962 -14.158 -2.039 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.126 3.874 10 N -0.330 5.330 11 C 0.335 3.665 12 O -0.415 6.415 13 C -0.102 4.102 14 N -0.024 5.024 15 N -0.272 5.272 16 C 0.054 3.946 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.147 4.147 20 C -0.133 4.133 21 C -0.143 4.143 22 C -0.108 4.108 23 C 0.287 3.713 24 O -0.396 6.396 25 C -0.182 4.182 26 C -0.148 4.148 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.235 0.765 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.105 -14.047 -2.022 20.009 hybrid contribution 0.445 0.407 -0.192 0.633 sum 14.550 -13.639 -2.215 20.066 Atomic orbital electron populations 1.69964 1.06103 1.27420 1.48748 1.24927 0.94903 0.99433 0.94570 0.86411 0.79670 0.82568 0.78273 1.20432 1.20986 1.19675 1.21194 0.93376 0.90226 1.53468 0.91720 1.19273 0.88224 0.81684 0.98217 1.46504 1.12200 1.05477 1.68837 1.17289 0.86920 0.82576 0.79671 1.90826 1.14802 1.84265 1.51600 1.25208 0.90857 0.97424 0.96727 1.74735 1.00711 1.15860 1.11118 1.49083 1.08549 1.05919 1.63654 1.20402 0.76745 1.03212 0.94247 1.20083 0.99086 0.93883 0.98333 1.21196 0.96176 0.99496 0.94793 1.21132 0.99935 0.96195 0.97470 1.21205 0.99361 0.93237 0.99493 1.21200 0.97736 0.99719 0.95607 1.21182 0.97255 0.95556 0.96819 1.21304 0.91438 0.81905 0.76692 1.90691 1.53444 1.43368 1.52064 1.21852 0.90363 1.03249 1.02759 1.20902 1.01770 0.89416 1.02695 0.92372 0.94944 0.94897 0.76474 0.88249 0.88100 0.85644 0.86222 0.86213 0.85802 0.85319 0.86526 0.87545 0.88268 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -14.23 9.28 -34.44 -0.32 -14.55 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.19 5.43 -5.19 -0.03 6.16 16 10 N -0.68 -13.81 5.53 -62.78 -0.35 -14.16 16 11 C 0.55 10.40 7.77 -12.83 -0.10 10.30 16 12 O -0.54 -11.68 16.23 5.22 0.08 -11.60 16 13 C 0.09 1.34 6.78 -80.14 -0.54 0.80 16 14 N -0.21 -2.97 10.55 34.90 0.37 -2.60 16 15 N -0.45 -5.79 3.45 -61.46 -0.21 -6.01 16 16 C 0.17 1.95 5.82 -5.19 -0.03 1.92 16 17 C -0.11 -1.32 5.46 -104.62 -0.57 -1.89 16 18 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 19 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 20 C -0.11 -1.16 10.05 -39.59 -0.40 -1.56 16 21 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 22 C -0.09 -1.04 9.70 -39.59 -0.38 -1.42 16 23 C 0.50 6.39 7.55 -10.97 -0.08 6.31 16 24 O -0.52 -7.63 16.20 5.58 0.09 -7.54 16 25 C -0.14 -1.45 6.20 -27.86 -0.17 -1.62 16 26 C -0.11 -1.21 5.85 -27.97 -0.16 -1.37 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.40 7.35 7.61 -40.82 -0.31 7.04 16 31 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.10 1.06 7.36 -51.93 -0.38 0.68 16 33 H 0.13 1.45 7.57 -52.49 -0.40 1.05 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.12 1.30 7.53 -51.93 -0.39 0.91 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -31.33 358.25 -8.21 -39.54 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.24 Total: 6.42 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -4.07 Total: -0.26 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.55 Total: -47.25 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.33 -8.21 -39.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916161202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.080 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds