Wall clock time and date at job start Tue Mar 31 2020 11:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38751 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05809 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94633 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47464 * 265.00532 * 7 6 5 9 9 O 1.21304 * 120.00189 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00051 * 180.02562 * 8 7 6 11 11 C 1.40601 * 119.99960 * 179.97438 * 10 8 7 12 12 C 1.40645 * 126.07916 * 359.68934 * 11 10 8 13 13 N 1.30913 * 108.38147 * 179.81250 * 12 11 10 14 14 N 1.40070 * 108.40973 * 0.44447 * 13 12 11 15 15 C 1.37319 * 126.06912 * 179.69110 * 14 13 12 16 16 H 1.07997 * 119.99788 * 180.02562 * 15 14 13 17 17 C 1.38981 * 120.00205 * 0.02941 * 15 14 13 18 18 N 1.31296 * 120.00108 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47369 * 59.99206 * 19 17 15 21 21 H 1.48500 * 109.47506 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46740 * 299.99747 * 19 17 15 23 23 C 1.35676 * 126.08231 * 179.97438 * 11 10 8 24 24 C 1.38246 * 120.11014 * 0.02562 * 6 5 4 25 25 C 1.50704 * 119.97128 * 180.02562 * 24 6 5 26 26 C 1.38162 * 120.05734 * 359.76698 * 24 6 5 27 27 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02961 * 0.02562 * 4 3 2 31 31 H 1.08007 * 119.96925 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47297 * 25.00295 * 7 6 5 33 33 H 1.09002 * 109.47382 * 144.99782 * 7 6 5 34 34 H 0.96996 * 120.00088 * 359.97438 * 10 8 7 35 35 H 1.07992 * 125.80915 * 359.96966 * 12 11 10 36 36 H 0.97005 * 120.00378 * 180.02562 * 18 17 15 37 37 H 1.08010 * 126.24560 * 359.97438 * 23 11 10 38 38 H 1.09000 * 109.46973 * 90.00063 * 25 24 6 39 39 H 1.08992 * 109.47226 * 210.00189 * 25 24 6 40 40 H 1.09000 * 109.46823 * 330.00052 * 25 24 6 41 41 H 1.07998 * 120.02953 * 180.25220 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 6 4.3237 5.4103 -1.4159 9 8 4.0375 4.6716 -2.3345 10 7 4.9448 6.5811 -1.6612 11 6 5.2604 6.9463 -2.9817 12 6 4.9942 6.1891 -4.1367 13 7 5.4288 6.8554 -5.1764 14 7 5.9964 8.0547 -4.7276 15 6 6.5680 9.0232 -5.5155 16 1 6.9785 9.9141 -5.0636 17 6 6.6182 8.8571 -6.8944 18 7 6.1196 7.7739 -7.4438 19 14 7.3964 10.1744 -7.9662 20 1 8.8173 10.3556 -7.5747 21 1 7.3248 9.7600 -9.3904 22 1 6.6660 11.4548 -7.7855 23 6 5.8806 8.0895 -3.3681 24 6 4.0559 2.5172 -0.0011 25 6 5.5607 2.5983 -0.0011 26 6 3.4311 1.2849 0.0038 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2127 2.3204 0.0014 31 1 1.3339 4.5114 0.0008 32 1 3.3213 5.7651 0.4342 33 1 4.9012 4.9600 0.5886 34 1 5.1740 7.1717 -0.9267 35 1 4.5111 5.2236 -4.1617 36 1 6.1549 7.6577 -8.4062 37 1 6.2205 8.8826 -2.7184 38 1 5.9236 2.6173 1.0266 39 1 5.9714 1.7294 -0.5153 40 1 5.8756 3.5067 -0.5145 41 1 4.0206 0.3800 0.0075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931192641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:53 Heat of formation + Delta-G solvation = 9.319657 kcal Electronic energy + Delta-G solvation = -25023.145928 eV Core-core repulsion = 21290.401473 eV Total energy + Delta-G solvation = -3732.744454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73343 -41.20130 -40.15363 -38.57219 -35.84554 -34.90396 -33.60604 -33.13499 -32.17773 -30.07598 -29.16371 -27.47672 -27.44493 -26.44534 -23.41068 -22.83224 -22.29193 -21.27309 -21.03270 -19.28115 -18.66535 -17.81664 -17.50809 -17.34786 -17.03556 -16.62397 -16.20691 -16.07321 -15.62638 -15.25353 -15.01915 -14.87023 -14.78549 -14.59351 -14.16843 -14.13142 -13.47037 -13.26646 -13.16754 -13.04371 -12.96031 -12.84667 -12.82163 -12.67354 -12.24700 -12.13317 -11.78240 -11.75705 -11.67069 -10.96292 -10.79796 -10.58484 -10.07298 -9.69479 -9.00605 -8.47302 -8.44984 -6.21902 0.40521 0.45177 1.26986 1.40103 1.56575 1.59930 1.91798 2.09530 2.35124 2.40228 2.58260 2.80107 3.04365 3.11009 3.75796 3.84465 3.97235 4.18879 4.22664 4.34398 4.38505 4.39704 4.44516 4.48025 4.62564 4.65757 4.68980 4.74921 4.81903 4.86600 5.02385 5.05557 5.12946 5.22064 5.32686 5.37109 5.43939 5.55898 5.71426 5.86613 5.98586 6.36441 6.47255 6.77070 6.87141 7.48007 7.54666 7.73009 8.54308 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027797 B = 0.002467 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.064539 B =11347.307753 C =11715.414137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.115 3.885 4 C -0.220 4.220 5 C -0.073 4.073 6 C -0.115 4.115 7 C -0.081 4.081 8 C 0.498 3.502 9 O -0.573 6.573 10 N -0.620 5.620 11 C -0.039 4.039 12 C -0.063 4.063 13 N -0.313 5.313 14 N -0.170 5.170 15 C -0.354 4.354 16 H 0.141 0.859 17 C -0.008 4.008 18 N -0.827 5.827 19 Si 1.019 2.981 20 H -0.253 1.253 21 H -0.280 1.280 22 H -0.253 1.253 23 C -0.082 4.082 24 C -0.040 4.040 25 C -0.116 4.116 26 C -0.173 4.173 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.421 0.579 35 H 0.163 0.837 36 H 0.275 0.725 37 H 0.189 0.811 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -6.136 19.832 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.069 3.931 4 C -0.238 4.238 5 C -0.091 4.091 6 C -0.116 4.116 7 C -0.121 4.121 8 C 0.286 3.714 9 O -0.452 6.452 10 N -0.266 5.266 11 C -0.145 4.145 12 C -0.238 4.238 13 N -0.145 5.145 14 N 0.061 4.939 15 C -0.485 4.485 16 H 0.158 0.842 17 C -0.220 4.220 18 N -0.455 5.455 19 Si 0.838 3.162 20 H -0.177 1.177 21 H -0.205 1.205 22 H -0.177 1.177 23 C -0.232 4.232 24 C -0.040 4.040 25 C -0.172 4.172 26 C -0.191 4.191 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.258 0.742 35 H 0.180 0.820 36 H 0.085 0.915 37 H 0.206 0.794 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.295 -6.967 17.738 20.070 hybrid contribution -0.132 0.466 0.221 0.532 sum -6.427 -6.501 17.958 20.151 Atomic orbital electron populations 1.23317 0.76596 1.05490 1.02110 1.86023 1.23398 1.26937 1.88822 1.19173 0.92541 0.84716 0.96621 1.21381 1.00914 0.91952 1.09578 1.21073 0.93922 0.97949 0.96121 1.19282 0.93671 0.93963 1.04667 1.20608 1.04222 0.95562 0.91662 1.21316 0.77359 0.80237 0.92484 1.90619 1.54271 1.52566 1.47733 1.42537 1.57896 1.20896 1.05225 1.17345 1.14187 0.97405 0.85598 1.24127 1.07506 1.01832 0.90309 1.78143 1.19292 0.95238 1.21828 1.44825 1.33114 1.12138 1.03873 1.20564 1.38668 0.99709 0.89588 0.84155 1.26893 0.96297 0.99896 0.98877 1.70408 1.36285 1.26443 1.12409 0.84656 0.79093 0.76657 0.75807 1.17674 1.20452 1.17666 1.22029 1.13317 1.01980 0.85913 1.19745 0.96864 0.91772 0.95595 1.20868 0.89970 1.02804 1.03553 1.20410 0.91826 0.98391 1.08505 0.91337 0.92485 0.86242 0.83624 0.84141 0.85002 0.85247 0.74180 0.81969 0.91515 0.79429 0.88152 0.91456 0.92361 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -7.92 10.50 -92.48 -0.97 -8.89 16 3 C 0.11 2.94 6.69 22.51 0.15 3.09 16 4 C -0.22 -5.09 9.04 22.36 0.20 -4.89 16 5 C -0.07 -1.72 9.67 22.25 0.22 -1.50 16 6 C -0.12 -2.87 4.37 -19.85 -0.09 -2.95 16 7 C -0.08 -1.67 5.15 29.10 0.15 -1.52 16 8 C 0.50 16.22 7.01 87.66 0.61 16.83 16 9 O -0.57 -24.99 13.19 -3.10 -0.04 -25.04 16 10 N -0.62 -20.21 5.47 -303.93 -1.66 -21.87 16 11 C -0.04 -1.79 6.90 37.73 0.26 -1.52 16 12 C -0.06 -3.47 10.85 85.42 0.93 -2.54 16 13 N -0.31 -19.23 10.40 -56.47 -0.59 -19.82 16 14 N -0.17 -9.54 3.74 -190.02 -0.71 -10.25 16 15 C -0.35 -18.91 10.25 84.01 0.86 -18.05 16 16 H 0.14 6.44 7.83 -2.91 -0.02 6.42 16 17 C -0.01 -0.44 5.50 84.95 0.47 0.02 16 18 N -0.83 -48.65 11.81 21.66 0.26 -48.40 16 19 Si 1.02 38.97 29.55 68.60 2.03 41.00 16 20 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 21 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 23 C -0.08 -3.79 11.49 83.37 0.96 -2.83 16 24 C -0.04 -1.02 5.88 -19.88 -0.12 -1.14 16 25 C -0.12 -2.53 9.21 71.24 0.66 -1.87 16 26 C -0.17 -4.54 9.64 22.37 0.22 -4.33 16 27 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 28 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 29 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.15 2.59 6.30 -2.91 -0.02 2.57 16 31 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.13 1.84 8.05 -2.39 -0.02 1.82 16 33 H 0.13 1.91 6.98 -2.39 -0.02 1.89 16 34 H 0.42 9.40 8.83 -92.71 -0.82 8.58 16 35 H 0.16 9.24 5.92 -2.91 -0.02 9.22 16 36 H 0.28 14.94 8.31 -92.70 -0.77 14.17 16 37 H 0.19 6.71 8.06 -2.91 -0.02 6.68 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 40 H 0.06 1.44 6.15 -2.39 -0.01 1.42 16 41 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -82.51 349.67 5.16 -77.35 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: 0.26 Total: 37.72 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 6.59 Total: -21.81 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -2.70 Total: -100.33 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.01 Total: -33.92 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -82.51 5.16 -77.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931192641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.672 kcal (2) G-P(sol) polarization free energy of solvation -82.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds