Wall clock time and date at job start Tue Mar 31 2020 10:38:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86801 * 119.99918 * 2 1
4 4 H 1.48500 * 109.47042 * 270.00301 * 3 2 1
5 5 H 1.48504 * 109.47135 * 29.99683 * 3 2 1
6 6 H 1.48496 * 109.47136 * 149.99989 * 3 2 1
7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3
8 8 H 1.07994 * 119.99676 * 179.97438 * 7 2 1
9 9 C 1.50696 * 119.99571 * 0.02562 * 7 2 1
10 10 C 1.53008 * 109.46784 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.47045 * 179.97438 * 10 9 7
12 12 N 1.46495 * 109.46914 * 179.97438 * 11 10 9
13 13 C 1.34784 * 120.00114 * 179.97438 * 12 11 10
14 14 O 1.21589 * 119.99766 * 359.97438 * 13 12 11
15 15 N 1.34775 * 120.00415 * 180.02562 * 13 12 11
16 16 C 1.39959 * 120.00242 * 184.61363 * 15 13 12
17 17 C 1.38957 * 120.01090 * 144.87439 * 16 15 13
18 18 C 1.38175 * 120.17174 * 180.02562 * 17 16 15
19 19 C 1.38087 * 120.19286 * 0.02562 * 18 17 16
20 20 C 1.39335 * 120.02143 * 359.97438 * 19 18 17
21 21 C 1.48439 * 120.08489 * 179.97438 * 20 19 18
22 22 C 1.42283 * 126.93672 * 4.71303 * 21 20 19
23 23 C 1.35238 * 103.93242 * 179.84924 * 22 21 20
24 24 O 1.34061 * 106.67769 * 0.40996 * 23 22 21
25 25 N 1.20912 * 111.83886 * 359.71462 * 24 23 22
26 26 C 1.38646 * 120.01241 * 324.90486 * 16 15 13
27 27 H 0.96998 * 120.00109 * 0.02562 * 1 2 3
28 28 H 1.08998 * 109.47430 * 59.99617 * 9 7 2
29 29 H 1.08996 * 109.47218 * 299.99596 * 9 7 2
30 30 H 1.08998 * 109.47139 * 59.99819 * 10 9 7
31 31 H 1.08996 * 109.47223 * 299.99973 * 10 9 7
32 32 H 1.08998 * 109.47180 * 59.99990 * 11 10 9
33 33 H 1.08996 * 109.47207 * 300.00129 * 11 10 9
34 34 H 0.96995 * 120.00579 * 0.02562 * 12 11 10
35 35 H 0.97005 * 119.99807 * 4.61269 * 15 13 12
36 36 H 1.08002 * 119.91675 * 0.02562 * 17 16 15
37 37 H 1.07998 * 119.90637 * 180.02562 * 18 17 16
38 38 H 1.08000 * 119.99296 * 180.27895 * 19 18 17
39 39 H 1.07997 * 128.03540 * 0.02562 * 22 21 20
40 40 H 1.07995 * 126.66131 * 180.11840 * 23 22 21
41 41 H 1.07999 * 120.09610 * 359.94544 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0047 -1.1941 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2511 -2.4991 0.0005
10 6 2.2454 -3.6621 0.0005
11 6 1.4804 -4.9871 0.0012
12 7 2.4325 -6.1005 0.0006
13 6 1.9833 -7.3713 0.0015
14 8 0.7879 -7.5935 0.0033
15 7 2.8591 -8.3957 0.0014
16 6 2.3955 -9.7128 -0.0951
17 6 3.1339 -10.6600 -0.7940
18 6 2.6791 -11.9611 -0.8918
19 6 1.4882 -12.3271 -0.2962
20 6 0.7414 -11.3838 0.4066
21 6 -0.5392 -11.7757 1.0469
22 6 -1.0952 -13.0835 1.1167
23 6 -2.2518 -12.9097 1.7957
24 8 -2.3407 -11.6017 2.0760
25 7 -1.3880 -10.9862 1.6569
26 6 1.1991 -10.0727 0.5061
27 1 -0.4850 0.8400 -0.0004
28 1 0.6247 -2.5570 -0.8896
29 1 0.6242 -2.5567 0.8903
30 1 2.8721 -3.6043 0.8905
31 1 2.8721 -3.6043 -0.8894
32 1 0.8535 -5.0451 -0.8886
33 1 0.8541 -5.0446 0.8913
34 1 3.3861 -5.9233 0.0002
35 1 3.8107 -8.2202 0.0683
36 1 4.0656 -10.3786 -1.2620
37 1 3.2566 -12.6939 -1.4357
38 1 1.1380 -13.3460 -0.3709
39 1 -0.6870 -14.0021 0.7220
40 1 -2.9675 -13.6752 2.0568
41 1 0.6239 -9.3381 1.0501
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000933793831.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:38:49
Heat of formation + Delta-G solvation = 50.945052 kcal
Electronic energy + Delta-G solvation = -24168.739089 eV
Core-core repulsion = 20437.799647 eV
Total energy + Delta-G solvation = -3730.939442 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-45.11330 -40.67866 -38.89745 -35.80528 -35.08677 -34.09285 -33.33398 -32.12142
-31.32367 -30.57036 -29.52496 -26.63080 -24.41221 -23.96682 -23.19587 -22.08858
-21.16075 -20.88900 -20.33649 -18.64081 -18.15330 -17.74684 -17.15287 -16.50080
-16.29347 -15.80079 -15.47627 -14.89468 -14.75717 -14.42692 -14.21099 -14.09553
-13.84491 -13.53422 -13.33034 -13.18621 -12.29392 -12.08535 -11.88626 -11.83248
-11.72038 -11.48480 -11.16018 -10.91068 -10.74344 -10.59947 -10.34665 -10.05909
-9.98142 -9.87725 -9.46077 -9.13495 -8.90678 -8.77790 -8.37396 -8.24007
-6.01855 -4.05167 0.62752 1.17387 1.34662 2.24670 2.59030 3.01702
3.16520 3.30635 3.37033 3.39710 3.69013 3.78155 4.11443 4.30203
4.44512 4.70702 4.81918 4.83789 4.91901 5.04449 5.18345 5.33715
5.33806 5.39678 5.56625 5.65322 5.77696 5.80350 6.05369 6.12564
6.15758 6.24979 6.33569 6.45262 6.59084 6.73403 6.82636 6.94119
6.99537 7.63301 7.75721 7.94885 7.96744 8.05322 8.37188 8.56206
9.01472 9.58956 11.09404
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.019895 B = 0.002116 C = 0.001928
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1407.035802 B =13229.038455 C =14518.423508
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.056 3.944
3 Si 0.894 3.106
4 H -0.281 1.281
5 H -0.286 1.286
6 H -0.274 1.274
7 C -0.523 4.523
8 H 0.055 0.945
9 C 0.024 3.976
10 C -0.120 4.120
11 C 0.133 3.867
12 N -0.734 5.734
13 C 0.697 3.303
14 O -0.570 6.570
15 N -0.691 5.691
16 C 0.172 3.828
17 C -0.139 4.139
18 C -0.101 4.101
19 C -0.116 4.116
20 C -0.008 4.008
21 C 0.054 3.946
22 C -0.224 4.224
23 C -0.062 4.062
24 O 0.109 5.891
25 N -0.345 5.345
26 C -0.093 4.093
27 H 0.261 0.739
28 H 0.019 0.981
29 H 0.020 0.980
30 H 0.054 0.946
31 H 0.054 0.946
32 H 0.065 0.935
33 H 0.065 0.935
34 H 0.396 0.604
35 H 0.407 0.593
36 H 0.128 0.872
37 H 0.131 0.869
38 H 0.126 0.874
39 H 0.173 0.827
40 H 0.218 0.782
41 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.587 -31.294 0.801 31.638
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.145 4.145
3 Si 0.721 3.279
4 H -0.207 1.207
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.561 4.561
8 H 0.074 0.926
9 C -0.014 4.014
10 C -0.158 4.158
11 C 0.010 3.990
12 N -0.388 5.388
13 C 0.397 3.603
14 O -0.447 6.447
15 N -0.339 5.339
16 C 0.076 3.924
17 C -0.161 4.161
18 C -0.119 4.119
19 C -0.137 4.137
20 C -0.010 4.010
21 C -0.103 4.103
22 C -0.246 4.246
23 C -0.143 4.143
24 O 0.038 5.962
25 N -0.045 5.045
26 C -0.115 4.115
27 H 0.071 0.929
28 H 0.038 0.962
29 H 0.038 0.962
30 H 0.073 0.927
31 H 0.073 0.927
32 H 0.083 0.917
33 H 0.083 0.917
34 H 0.229 0.771
35 H 0.242 0.758
36 H 0.146 0.854
37 H 0.149 0.851
38 H 0.144 0.856
39 H 0.191 0.809
40 H 0.234 0.766
41 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 3.257 -29.902 1.064 30.097
hybrid contribution 1.548 0.261 -0.316 1.601
sum 4.804 -29.640 0.748 30.036
Atomic orbital electron populations
1.69969 1.06051 1.26711 1.50472 1.25041 0.94869 0.99323 0.95286
0.86574 0.79779 0.83428 0.78081 1.20665 1.21193 1.19911 1.21191
0.92971 0.90917 1.51016 0.92646 1.19031 0.93843 0.90766 0.97755
1.21899 0.99825 0.93200 1.00895 1.21595 0.91240 0.83935 1.02191
1.45408 1.10760 1.04138 1.78501 1.16043 0.85240 0.80831 0.78178
1.90964 1.13794 1.83498 1.56397 1.42657 1.10022 1.03553 1.77697
1.17380 0.95130 0.83255 0.96613 1.21002 1.01544 0.93578 0.99969
1.20782 0.95943 0.95597 0.99604 1.20996 0.95101 0.98914 0.98655
1.17540 0.91066 0.93569 0.98818 1.22072 0.96687 0.90363 1.01165
1.22749 0.96997 0.98777 1.06033 1.25971 1.00287 0.87119 1.00896
1.84876 1.35403 1.17968 1.57941 1.74287 0.96947 1.20021 1.13278
1.21464 0.96122 0.95343 0.98552 0.92900 0.96220 0.96181 0.92688
0.92694 0.91696 0.91656 0.77077 0.75755 0.85372 0.85115 0.85644
0.80939 0.76583 0.83159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16
2 C 0.06 1.61 5.46 -17.81 -0.10 1.52 16
3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16
4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16
8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16
9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16
10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16
11 C 0.13 2.38 5.67 -4.05 -0.02 2.36 16
12 N -0.73 -10.55 5.56 -65.23 -0.36 -10.92 16
13 C 0.70 10.86 8.41 -86.91 -0.73 10.13 16
14 O -0.57 -11.41 13.77 5.29 0.07 -11.33 16
15 N -0.69 -7.99 5.34 -14.25 -0.08 -8.07 16
16 C 0.17 2.09 6.30 -83.73 -0.53 1.57 16
17 C -0.14 -1.27 9.96 -39.34 -0.39 -1.66 16
18 C -0.10 -0.80 10.03 -39.66 -0.40 -1.20 16
19 C -0.12 -1.05 9.60 -39.23 -0.38 -1.43 16
20 C -0.01 -0.10 5.87 -104.92 -0.62 -0.72 16
21 C 0.05 0.66 7.05 -82.47 -0.58 0.08 16
22 C -0.22 -1.79 10.52 -39.10 -0.41 -2.20 16
23 C -0.06 -0.42 12.28 29.66 0.36 -0.06 16
24 O 0.11 1.22 11.18 17.12 0.19 1.41 16
25 N -0.35 -4.93 11.82 33.32 0.39 -4.53 16
26 C -0.09 -1.34 8.34 -39.06 -0.33 -1.67 16
27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16
31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
34 H 0.40 4.36 8.49 -40.82 -0.35 4.01 16
35 H 0.41 3.12 8.84 -40.82 -0.36 2.76 16
36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16
37 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16
38 H 0.13 0.77 7.24 -52.49 -0.38 0.39 16
39 H 0.17 0.79 7.59 -52.49 -0.40 0.40 16
40 H 0.22 0.39 8.06 -52.49 -0.42 -0.03 16
41 H 0.15 2.66 6.06 -52.49 -0.32 2.34 16
LS Contribution 357.95 15.07 5.39 5.39
Total: -1.00 -36.47 357.95 -8.53 -45.00
By element:
Atomic # 1 Polarization: 8.13 SS G_CDS: -5.15 Total: 2.98 kcal
Atomic # 6 Polarization: -5.54 SS G_CDS: -4.71 Total: -10.24 kcal
Atomic # 7 Polarization: -50.46 SS G_CDS: 0.69 Total: -49.77 kcal
Atomic # 8 Polarization: -10.19 SS G_CDS: 0.26 Total: -9.92 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -36.47 -8.53 -45.00 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000933793831.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.949 kcal
(2) G-P(sol) polarization free energy of solvation -36.474 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.474 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds