Wall clock time and date at job start Tue Mar 31 2020 10:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47042 * 270.00301 * 3 2 1 5 5 H 1.48504 * 109.47135 * 29.99683 * 3 2 1 6 6 H 1.48496 * 109.47136 * 149.99989 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99676 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99571 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46784 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47045 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.46914 * 179.97438 * 11 10 9 13 13 C 1.34784 * 120.00114 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99766 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00415 * 180.02562 * 13 12 11 16 16 C 1.39959 * 120.00242 * 184.61363 * 15 13 12 17 17 C 1.38957 * 120.01090 * 144.87439 * 16 15 13 18 18 C 1.38175 * 120.17174 * 180.02562 * 17 16 15 19 19 C 1.38087 * 120.19286 * 0.02562 * 18 17 16 20 20 C 1.39335 * 120.02143 * 359.97438 * 19 18 17 21 21 C 1.48439 * 120.08489 * 179.97438 * 20 19 18 22 22 C 1.42283 * 126.93672 * 4.71303 * 21 20 19 23 23 C 1.35238 * 103.93242 * 179.84924 * 22 21 20 24 24 O 1.34061 * 106.67769 * 0.40996 * 23 22 21 25 25 N 1.20912 * 111.83886 * 359.71462 * 24 23 22 26 26 C 1.38646 * 120.01241 * 324.90486 * 16 15 13 27 27 H 0.96998 * 120.00109 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47430 * 59.99617 * 9 7 2 29 29 H 1.08996 * 109.47218 * 299.99596 * 9 7 2 30 30 H 1.08998 * 109.47139 * 59.99819 * 10 9 7 31 31 H 1.08996 * 109.47223 * 299.99973 * 10 9 7 32 32 H 1.08998 * 109.47180 * 59.99990 * 11 10 9 33 33 H 1.08996 * 109.47207 * 300.00129 * 11 10 9 34 34 H 0.96995 * 120.00579 * 0.02562 * 12 11 10 35 35 H 0.97005 * 119.99807 * 4.61269 * 15 13 12 36 36 H 1.08002 * 119.91675 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.90637 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.99296 * 180.27895 * 19 18 17 39 39 H 1.07997 * 128.03540 * 0.02562 * 22 21 20 40 40 H 1.07995 * 126.66131 * 180.11840 * 23 22 21 41 41 H 1.07999 * 120.09610 * 359.94544 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4325 -6.1005 0.0006 13 6 1.9833 -7.3713 0.0015 14 8 0.7879 -7.5935 0.0033 15 7 2.8591 -8.3957 0.0014 16 6 2.3955 -9.7128 -0.0951 17 6 3.1339 -10.6600 -0.7940 18 6 2.6791 -11.9611 -0.8918 19 6 1.4882 -12.3271 -0.2962 20 6 0.7414 -11.3838 0.4066 21 6 -0.5392 -11.7757 1.0469 22 6 -1.0952 -13.0835 1.1167 23 6 -2.2518 -12.9097 1.7957 24 8 -2.3407 -11.6017 2.0760 25 7 -1.3880 -10.9862 1.6569 26 6 1.1991 -10.0727 0.5061 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8721 -3.6043 0.8905 31 1 2.8721 -3.6043 -0.8894 32 1 0.8535 -5.0451 -0.8886 33 1 0.8541 -5.0446 0.8913 34 1 3.3861 -5.9233 0.0002 35 1 3.8107 -8.2202 0.0683 36 1 4.0656 -10.3786 -1.2620 37 1 3.2566 -12.6939 -1.4357 38 1 1.1380 -13.3460 -0.3709 39 1 -0.6870 -14.0021 0.7220 40 1 -2.9675 -13.6752 2.0568 41 1 0.6239 -9.3381 1.0501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933793831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:49 Heat of formation + Delta-G solvation = 50.945052 kcal Electronic energy + Delta-G solvation = -24168.739089 eV Core-core repulsion = 20437.799647 eV Total energy + Delta-G solvation = -3730.939442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.11330 -40.67866 -38.89745 -35.80528 -35.08677 -34.09285 -33.33398 -32.12142 -31.32367 -30.57036 -29.52496 -26.63080 -24.41221 -23.96682 -23.19587 -22.08858 -21.16075 -20.88900 -20.33649 -18.64081 -18.15330 -17.74684 -17.15287 -16.50080 -16.29347 -15.80079 -15.47627 -14.89468 -14.75717 -14.42692 -14.21099 -14.09553 -13.84491 -13.53422 -13.33034 -13.18621 -12.29392 -12.08535 -11.88626 -11.83248 -11.72038 -11.48480 -11.16018 -10.91068 -10.74344 -10.59947 -10.34665 -10.05909 -9.98142 -9.87725 -9.46077 -9.13495 -8.90678 -8.77790 -8.37396 -8.24007 -6.01855 -4.05167 0.62752 1.17387 1.34662 2.24670 2.59030 3.01702 3.16520 3.30635 3.37033 3.39710 3.69013 3.78155 4.11443 4.30203 4.44512 4.70702 4.81918 4.83789 4.91901 5.04449 5.18345 5.33715 5.33806 5.39678 5.56625 5.65322 5.77696 5.80350 6.05369 6.12564 6.15758 6.24979 6.33569 6.45262 6.59084 6.73403 6.82636 6.94119 6.99537 7.63301 7.75721 7.94885 7.96744 8.05322 8.37188 8.56206 9.01472 9.58956 11.09404 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.002116 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.035802 B =13229.038455 C =14518.423508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.734 5.734 13 C 0.697 3.303 14 O -0.570 6.570 15 N -0.691 5.691 16 C 0.172 3.828 17 C -0.139 4.139 18 C -0.101 4.101 19 C -0.116 4.116 20 C -0.008 4.008 21 C 0.054 3.946 22 C -0.224 4.224 23 C -0.062 4.062 24 O 0.109 5.891 25 N -0.345 5.345 26 C -0.093 4.093 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.407 0.593 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.173 0.827 40 H 0.218 0.782 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 -31.294 0.801 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.010 3.990 12 N -0.388 5.388 13 C 0.397 3.603 14 O -0.447 6.447 15 N -0.339 5.339 16 C 0.076 3.924 17 C -0.161 4.161 18 C -0.119 4.119 19 C -0.137 4.137 20 C -0.010 4.010 21 C -0.103 4.103 22 C -0.246 4.246 23 C -0.143 4.143 24 O 0.038 5.962 25 N -0.045 5.045 26 C -0.115 4.115 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.229 0.771 35 H 0.242 0.758 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.191 0.809 40 H 0.234 0.766 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.257 -29.902 1.064 30.097 hybrid contribution 1.548 0.261 -0.316 1.601 sum 4.804 -29.640 0.748 30.036 Atomic orbital electron populations 1.69969 1.06051 1.26711 1.50472 1.25041 0.94869 0.99323 0.95286 0.86574 0.79779 0.83428 0.78081 1.20665 1.21193 1.19911 1.21191 0.92971 0.90917 1.51016 0.92646 1.19031 0.93843 0.90766 0.97755 1.21899 0.99825 0.93200 1.00895 1.21595 0.91240 0.83935 1.02191 1.45408 1.10760 1.04138 1.78501 1.16043 0.85240 0.80831 0.78178 1.90964 1.13794 1.83498 1.56397 1.42657 1.10022 1.03553 1.77697 1.17380 0.95130 0.83255 0.96613 1.21002 1.01544 0.93578 0.99969 1.20782 0.95943 0.95597 0.99604 1.20996 0.95101 0.98914 0.98655 1.17540 0.91066 0.93569 0.98818 1.22072 0.96687 0.90363 1.01165 1.22749 0.96997 0.98777 1.06033 1.25971 1.00287 0.87119 1.00896 1.84876 1.35403 1.17968 1.57941 1.74287 0.96947 1.20021 1.13278 1.21464 0.96122 0.95343 0.98552 0.92900 0.96220 0.96181 0.92688 0.92694 0.91696 0.91656 0.77077 0.75755 0.85372 0.85115 0.85644 0.80939 0.76583 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.61 5.46 -17.81 -0.10 1.52 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.13 2.38 5.67 -4.05 -0.02 2.36 16 12 N -0.73 -10.55 5.56 -65.23 -0.36 -10.92 16 13 C 0.70 10.86 8.41 -86.91 -0.73 10.13 16 14 O -0.57 -11.41 13.77 5.29 0.07 -11.33 16 15 N -0.69 -7.99 5.34 -14.25 -0.08 -8.07 16 16 C 0.17 2.09 6.30 -83.73 -0.53 1.57 16 17 C -0.14 -1.27 9.96 -39.34 -0.39 -1.66 16 18 C -0.10 -0.80 10.03 -39.66 -0.40 -1.20 16 19 C -0.12 -1.05 9.60 -39.23 -0.38 -1.43 16 20 C -0.01 -0.10 5.87 -104.92 -0.62 -0.72 16 21 C 0.05 0.66 7.05 -82.47 -0.58 0.08 16 22 C -0.22 -1.79 10.52 -39.10 -0.41 -2.20 16 23 C -0.06 -0.42 12.28 29.66 0.36 -0.06 16 24 O 0.11 1.22 11.18 17.12 0.19 1.41 16 25 N -0.35 -4.93 11.82 33.32 0.39 -4.53 16 26 C -0.09 -1.34 8.34 -39.06 -0.33 -1.67 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.40 4.36 8.49 -40.82 -0.35 4.01 16 35 H 0.41 3.12 8.84 -40.82 -0.36 2.76 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.13 0.77 7.24 -52.49 -0.38 0.39 16 39 H 0.17 0.79 7.59 -52.49 -0.40 0.40 16 40 H 0.22 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.15 2.66 6.06 -52.49 -0.32 2.34 16 LS Contribution 357.95 15.07 5.39 5.39 Total: -1.00 -36.47 357.95 -8.53 -45.00 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.15 Total: 2.98 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -4.71 Total: -10.24 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.69 Total: -49.77 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.26 Total: -9.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.47 -8.53 -45.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933793831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.949 kcal (2) G-P(sol) polarization free energy of solvation -36.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds