Wall clock time and date at job start Tue Mar 31 2020 10:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47042 * 270.00301 * 3 2 1 5 5 H 1.48504 * 109.47135 * 29.99683 * 3 2 1 6 6 H 1.48496 * 109.47136 * 149.99989 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99676 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99571 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46784 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47045 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.46914 * 179.97438 * 11 10 9 13 13 C 1.34784 * 120.00114 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99766 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00415 * 180.02562 * 13 12 11 16 16 C 1.39959 * 120.00242 * 184.61363 * 15 13 12 17 17 C 1.38957 * 120.01090 * 144.87439 * 16 15 13 18 18 C 1.38175 * 120.17174 * 180.02562 * 17 16 15 19 19 C 1.38087 * 120.19286 * 0.02562 * 18 17 16 20 20 C 1.39335 * 120.02143 * 359.97438 * 19 18 17 21 21 C 1.48439 * 120.08489 * 179.97438 * 20 19 18 22 22 C 1.42283 * 126.93672 * 4.71303 * 21 20 19 23 23 C 1.35238 * 103.93242 * 179.84924 * 22 21 20 24 24 O 1.34061 * 106.67769 * 0.40996 * 23 22 21 25 25 N 1.20912 * 111.83886 * 359.71462 * 24 23 22 26 26 C 1.38646 * 120.01241 * 324.90486 * 16 15 13 27 27 H 0.96998 * 120.00109 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47430 * 59.99617 * 9 7 2 29 29 H 1.08996 * 109.47218 * 299.99596 * 9 7 2 30 30 H 1.08998 * 109.47139 * 59.99819 * 10 9 7 31 31 H 1.08996 * 109.47223 * 299.99973 * 10 9 7 32 32 H 1.08998 * 109.47180 * 59.99990 * 11 10 9 33 33 H 1.08996 * 109.47207 * 300.00129 * 11 10 9 34 34 H 0.96995 * 120.00579 * 0.02562 * 12 11 10 35 35 H 0.97005 * 119.99807 * 4.61269 * 15 13 12 36 36 H 1.08002 * 119.91675 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.90637 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.99296 * 180.27895 * 19 18 17 39 39 H 1.07997 * 128.03540 * 0.02562 * 22 21 20 40 40 H 1.07995 * 126.66131 * 180.11840 * 23 22 21 41 41 H 1.07999 * 120.09610 * 359.94544 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4325 -6.1005 0.0006 13 6 1.9833 -7.3713 0.0015 14 8 0.7879 -7.5935 0.0033 15 7 2.8591 -8.3957 0.0014 16 6 2.3955 -9.7128 -0.0951 17 6 3.1339 -10.6600 -0.7940 18 6 2.6791 -11.9611 -0.8918 19 6 1.4882 -12.3271 -0.2962 20 6 0.7414 -11.3838 0.4066 21 6 -0.5392 -11.7757 1.0469 22 6 -1.0952 -13.0835 1.1167 23 6 -2.2518 -12.9097 1.7957 24 8 -2.3407 -11.6017 2.0760 25 7 -1.3880 -10.9862 1.6569 26 6 1.1991 -10.0727 0.5061 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8721 -3.6043 0.8905 31 1 2.8721 -3.6043 -0.8894 32 1 0.8535 -5.0451 -0.8886 33 1 0.8541 -5.0446 0.8913 34 1 3.3861 -5.9233 0.0002 35 1 3.8107 -8.2202 0.0683 36 1 4.0656 -10.3786 -1.2620 37 1 3.2566 -12.6939 -1.4357 38 1 1.1380 -13.3460 -0.3709 39 1 -0.6870 -14.0021 0.7220 40 1 -2.9675 -13.6752 2.0568 41 1 0.6239 -9.3381 1.0501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933793831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:48 Heat of formation + Delta-G solvation = 25.155492 kcal Electronic energy + Delta-G solvation = -24169.857408 eV Core-core repulsion = 20437.799647 eV Total energy + Delta-G solvation = -3732.057761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.90453 -41.76628 -39.85434 -37.19185 -36.22265 -35.28370 -34.90138 -33.08967 -32.81155 -31.38263 -30.54924 -28.42619 -25.33312 -25.20897 -24.37850 -23.11854 -22.38965 -21.92338 -21.69368 -19.53466 -19.22745 -18.58541 -18.55186 -17.93658 -17.27307 -16.97676 -16.64421 -16.38113 -16.03450 -15.68078 -15.58180 -15.20013 -14.71734 -14.32204 -14.26437 -14.08552 -13.94850 -13.77068 -13.58332 -12.85887 -12.77359 -12.57513 -12.51951 -12.39735 -12.30247 -12.03273 -11.70866 -11.62149 -11.32877 -11.21199 -11.09220 -10.64334 -10.57061 -10.24444 -9.62381 -9.11227 -8.20793 -6.32721 -0.15495 0.34458 0.75668 1.40261 1.42387 1.44674 1.52544 1.54003 1.97889 2.40723 2.47964 2.88030 3.06065 3.12859 3.15312 3.55903 4.03656 4.09280 4.12602 4.17676 4.21711 4.30491 4.43161 4.48839 4.51022 4.58726 4.75932 4.88203 4.90852 4.98208 5.13048 5.14163 5.27629 5.33127 5.36862 5.47838 5.49824 5.55289 5.67889 5.82184 5.89089 5.99667 6.20193 6.84501 6.92516 7.36367 7.36871 7.39047 8.91492 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.002116 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.035802 B =13229.038455 C =14518.423508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.023 3.977 10 C -0.099 4.099 11 C 0.149 3.851 12 N -0.720 5.720 13 C 0.694 3.306 14 O -0.621 6.621 15 N -0.671 5.671 16 C 0.146 3.854 17 C -0.128 4.128 18 C -0.090 4.090 19 C -0.106 4.106 20 C -0.031 4.031 21 C 0.027 3.973 22 C -0.223 4.223 23 C -0.047 4.047 24 O 0.091 5.909 25 N -0.407 5.407 26 C -0.130 4.130 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.009 1.009 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.416 0.584 35 H 0.427 0.573 36 H 0.162 0.838 37 H 0.176 0.824 38 H 0.161 0.839 39 H 0.211 0.789 40 H 0.269 0.731 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 -34.098 -0.291 34.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.015 4.015 10 C -0.137 4.137 11 C 0.024 3.976 12 N -0.376 5.376 13 C 0.394 3.606 14 O -0.500 6.500 15 N -0.321 5.321 16 C 0.051 3.949 17 C -0.149 4.149 18 C -0.109 4.109 19 C -0.126 4.126 20 C -0.032 4.032 21 C -0.129 4.129 22 C -0.244 4.244 23 C -0.127 4.127 24 O 0.023 5.977 25 N -0.110 5.110 26 C -0.152 4.152 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.009 0.991 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.253 0.747 35 H 0.267 0.733 36 H 0.180 0.820 37 H 0.193 0.807 38 H 0.178 0.822 39 H 0.228 0.772 40 H 0.285 0.715 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.385 -32.744 -0.024 33.361 hybrid contribution 0.547 0.962 0.027 1.107 sum 6.932 -31.782 0.003 32.529 Atomic orbital electron populations 1.70125 1.08027 1.27827 1.51677 1.26075 0.95772 1.03723 0.94787 0.85377 0.78653 0.78094 0.78483 1.19742 1.21106 1.18308 1.21672 0.93805 0.91865 1.50452 0.91315 1.18950 0.94476 0.93065 0.95030 1.21589 0.98421 0.91295 1.02386 1.21129 0.91343 0.84608 1.00502 1.44987 1.11194 1.03032 1.78363 1.16212 0.85003 0.81563 0.77820 1.90953 1.16366 1.84282 1.58448 1.42344 1.10401 1.02688 1.76646 1.17642 0.95373 0.83757 0.98099 1.21395 1.01926 0.93238 0.98313 1.21354 0.95395 0.95816 0.98289 1.21436 0.94786 0.99661 0.96718 1.17850 0.91860 0.93513 0.99981 1.22596 0.96814 0.92249 1.01214 1.23204 0.96908 0.98192 1.06085 1.27004 1.00752 0.86071 0.98892 1.84799 1.34800 1.20043 1.58098 1.74303 0.98621 1.22251 1.15790 1.21267 0.97486 0.95866 1.00580 0.92813 0.99012 0.99106 0.91151 0.90964 0.93427 0.93664 0.74694 0.73346 0.82027 0.80710 0.82166 0.77164 0.71516 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.25 13.29 21.45 0.28 -57.96 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 11 C 0.15 5.56 5.67 86.38 0.49 6.05 16 12 N -0.72 -20.94 5.56 -478.55 -2.66 -23.61 16 13 C 0.69 22.61 8.41 179.05 1.51 24.12 16 14 O -0.62 -27.07 13.77 -4.00 -0.06 -27.12 16 15 N -0.67 -15.49 5.34 -317.26 -1.69 -17.19 16 16 C 0.15 3.57 6.30 38.11 0.24 3.81 16 17 C -0.13 -1.94 9.96 22.43 0.22 -1.72 16 18 C -0.09 -1.07 10.03 22.22 0.22 -0.84 16 19 C -0.11 -1.63 9.60 22.50 0.22 -1.41 16 20 C -0.03 -0.77 5.87 -20.06 -0.12 -0.89 16 21 C 0.03 0.68 7.05 43.00 0.30 0.99 16 22 C -0.22 -3.18 10.52 22.58 0.24 -2.94 16 23 C -0.05 -0.58 12.28 67.13 0.82 0.25 16 24 O 0.09 2.17 11.18 71.45 0.80 2.97 16 25 N -0.41 -12.77 11.82 -49.45 -0.58 -13.36 16 26 C -0.13 -4.06 8.34 22.61 0.19 -3.87 16 27 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 28 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.42 8.59 8.49 -92.71 -0.79 7.81 16 35 H 0.43 5.88 8.84 -92.70 -0.82 5.06 16 36 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 38 H 0.16 1.25 7.24 -2.91 -0.02 1.23 16 39 H 0.21 1.09 7.59 -2.91 -0.02 1.07 16 40 H 0.27 -0.01 8.06 -2.91 -0.02 -0.04 16 41 H 0.10 4.15 6.06 -2.91 -0.02 4.14 16 Total: -1.00 -88.56 357.95 2.93 -85.63 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -0.53 Total: 13.30 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 5.34 Total: -8.98 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.66 Total: -112.11 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.74 Total: -24.16 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -88.56 2.93 -85.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933793831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.788 kcal (2) G-P(sol) polarization free energy of solvation -88.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds