Wall clock time and date at job start Tue Mar 31 2020 11:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38864 * 119.40579 * 2 1 4 4 C 1.38204 * 119.70820 * 179.97438 * 3 2 1 5 5 C 1.39305 * 118.33601 * 359.97438 * 4 3 2 6 6 O 1.34583 * 133.42437 * 179.97438 * 5 4 3 7 7 C 1.34868 * 110.81825 * 180.02562 * 6 5 4 8 8 C 1.47167 * 125.12798 * 179.97438 * 7 6 5 9 9 O 1.21632 * 119.99765 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00182 * 0.03079 * 8 7 6 11 11 C 1.47421 * 125.64805 * 0.02562 * 10 8 7 12 12 C 1.54917 * 104.83002 * 155.84496 * 11 10 8 13 13 C 1.55151 * 101.58025 * 37.01304 * 12 11 10 14 14 H 1.09000 * 110.72429 * 82.86540 * 13 12 11 15 15 N 1.46508 * 110.71893 * 206.13557 * 13 12 11 16 16 C 1.36932 * 120.00057 * 204.99943 * 15 13 12 17 17 H 1.08001 * 120.00140 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00045 * 179.97438 * 16 15 13 19 19 N 1.31620 * 120.00283 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00135 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47240 * 89.99618 * 20 18 16 22 22 H 1.48500 * 109.47039 * 210.00137 * 20 18 16 23 23 H 1.48501 * 109.46661 * 329.99468 * 20 18 16 24 24 C 1.47021 * 125.64744 * 179.97438 * 10 8 7 25 25 C 1.35748 * 109.73642 * 0.26101 * 7 6 5 26 26 C 1.40665 * 118.77727 * 0.02562 * 5 4 3 27 27 N 1.31428 * 119.40371 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47459 * 270.02088 * 1 2 3 29 29 H 1.09006 * 109.47237 * 30.02452 * 1 2 3 30 30 H 1.08998 * 109.47574 * 150.02073 * 1 2 3 31 31 H 1.08002 * 120.14428 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.83552 * 180.02562 * 4 3 2 33 33 H 1.09002 * 110.36865 * 37.00989 * 11 10 8 34 34 H 1.08994 * 110.46657 * 274.73138 * 11 10 8 35 35 H 1.08998 * 111.00193 * 155.08783 * 12 11 10 36 36 H 1.09004 * 111.00194 * 278.93638 * 12 11 10 37 37 H 0.97000 * 119.99866 * 25.00348 * 15 13 12 38 38 H 0.96995 * 120.00289 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.88310 * 300.50411 * 24 10 8 40 40 H 1.09002 * 109.88672 * 61.51452 * 24 10 8 41 41 H 1.08000 * 126.92784 * 179.71534 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2097 0.0000 4 6 3.5708 1.2170 0.0005 5 6 4.2385 -0.0056 0.0016 6 8 5.5398 -0.3491 0.0019 7 6 5.6815 -1.6903 0.0025 8 6 6.9674 -2.4059 0.0025 9 8 6.9866 -3.6221 0.0026 10 7 8.1239 -1.7137 0.0024 11 6 8.2459 -0.2445 0.0029 12 6 9.6406 0.0373 0.6153 13 6 10.4793 -1.1294 0.0301 14 1 10.8217 -0.8911 -0.9769 15 7 11.6130 -1.4420 0.9040 16 6 12.7328 -2.0363 0.3865 17 1 12.7803 -2.2750 -0.6658 18 6 13.8071 -2.3321 1.2143 19 7 14.8837 -2.9028 0.7169 20 14 13.7248 -1.9200 3.0344 21 1 13.1547 -3.0722 3.7776 22 1 15.0916 -1.6327 3.5392 23 1 12.8629 -0.7272 3.2333 24 6 9.4727 -2.2988 0.0028 25 6 4.4590 -2.2804 -0.0032 26 6 3.4810 -1.1908 0.0016 27 7 2.1523 -1.1450 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6415 2.1408 0.0004 32 1 4.1195 2.1473 0.0010 33 1 7.4642 0.2008 0.6184 34 1 8.1931 0.1426 -1.0147 35 1 10.0260 1.0010 0.2823 36 1 9.6068 -0.0132 1.7037 37 1 11.5702 -1.2281 1.8491 38 1 15.6345 -3.1091 1.2953 39 1 9.6056 -2.9232 0.8862 40 1 9.6184 -2.8952 -0.8978 41 1 4.2500 -3.3400 -0.0085 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970540467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:25 Heat of formation + Delta-G solvation = 8.876613 kcal Electronic energy + Delta-G solvation = -25193.150111 eV Core-core repulsion = 21460.386444 eV Total energy + Delta-G solvation = -3732.763666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.87029 -41.19064 -40.10361 -38.94863 -36.13412 -34.39354 -33.75278 -33.38847 -32.04458 -31.43940 -29.83418 -28.47756 -26.31918 -24.93173 -23.90586 -23.49185 -22.79017 -21.90651 -21.21955 -19.88485 -19.12295 -18.67880 -17.99081 -17.45389 -17.14626 -16.71010 -16.54446 -16.37225 -15.70337 -15.42988 -15.09740 -14.83538 -14.78307 -14.54105 -14.40119 -14.14628 -13.97307 -13.75461 -13.47067 -13.40174 -13.14422 -13.03678 -13.01244 -12.59081 -12.43014 -12.17590 -11.86079 -11.69841 -11.67777 -11.59059 -11.06774 -10.56164 -10.13665 -9.93006 -9.66174 -9.43142 -8.04362 -5.40692 -0.72559 0.00293 0.57734 1.06568 1.37511 1.41826 1.48226 1.70238 1.81859 2.46984 2.57548 2.71428 3.23848 3.28222 3.38014 3.44442 3.67507 3.68952 3.75635 3.90000 4.10213 4.15492 4.24912 4.29492 4.40551 4.44713 4.57900 4.69884 4.73504 4.81706 4.83854 4.85122 4.90996 5.00506 5.08189 5.11833 5.13557 5.27211 5.37719 5.71446 5.74992 6.17720 6.20498 6.67089 6.78520 7.03737 7.76985 7.95608 9.16346 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032714 B = 0.002548 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.694958 B =10986.323379 C =11332.423785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.121 3.879 3 C -0.124 4.124 4 C -0.053 4.053 5 C -0.005 4.005 6 O -0.167 6.167 7 C -0.004 4.004 8 C 0.603 3.397 9 O -0.554 6.554 10 N -0.598 5.598 11 C 0.103 3.897 12 C -0.130 4.130 13 C 0.171 3.829 14 H 0.079 0.921 15 N -0.738 5.738 16 C -0.237 4.237 17 H 0.061 0.939 18 C -0.061 4.061 19 N -0.980 5.980 20 Si 0.953 3.047 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.243 1.243 24 C 0.090 3.910 25 C -0.114 4.114 26 C 0.040 3.960 27 N -0.477 5.477 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.198 0.802 32 H 0.184 0.816 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.369 0.631 38 H 0.258 0.742 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.952 16.326 -0.643 35.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.079 4.079 5 C -0.056 4.056 6 O -0.068 6.068 7 C -0.056 4.056 8 C 0.391 3.609 9 O -0.435 6.435 10 N -0.329 5.329 11 C -0.019 4.019 12 C -0.168 4.168 13 C 0.061 3.939 14 H 0.097 0.903 15 N -0.380 5.380 16 C -0.368 4.368 17 H 0.079 0.921 18 C -0.253 4.253 19 N -0.630 5.630 20 Si 0.780 3.220 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.167 1.167 24 C -0.036 4.036 25 C -0.135 4.135 26 C -0.088 4.088 27 N -0.189 5.189 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.087 0.913 31 H 0.215 0.785 32 H 0.201 0.799 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.203 0.797 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -30.972 14.949 -0.804 34.401 hybrid contribution 1.197 -0.317 0.935 1.552 sum -29.775 14.632 0.131 33.176 Atomic orbital electron populations 1.20861 0.85631 1.04909 1.04416 1.22117 0.98930 0.87425 0.94140 1.22445 0.92766 1.00849 0.98285 1.21051 0.94090 0.94769 0.97992 1.21075 0.82101 0.97793 1.04610 1.84100 1.25080 1.21488 1.76118 1.21549 0.94680 0.81039 1.08334 1.16538 0.81156 0.85486 0.77708 1.90875 1.86218 1.13334 1.53074 1.48475 1.04963 1.09730 1.69763 1.22695 0.98453 0.77552 1.03162 1.23099 0.92939 0.99541 1.01229 1.21375 0.85495 0.91576 0.95496 0.90260 1.42672 1.14445 1.73222 1.07659 1.19044 0.92568 1.30584 0.94567 0.92050 1.25522 0.95934 1.01159 1.02698 1.69878 1.07033 1.49400 1.36682 0.85450 0.77061 0.79002 0.80512 1.21209 1.22233 1.16740 1.22963 0.80600 0.98906 1.01105 1.22598 0.88718 1.00368 1.01836 1.20596 0.90954 0.92395 1.04856 1.66853 1.06975 1.31830 1.13225 0.89012 0.87133 0.91253 0.78450 0.79905 0.88182 0.88673 0.86743 0.90383 0.79671 0.93292 0.92869 0.92662 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.16 71.24 0.72 0.03 16 2 C 0.12 1.71 6.78 42.77 0.29 2.00 16 3 C -0.12 -1.05 9.71 22.41 0.22 -0.83 16 4 C -0.05 -0.61 10.19 22.52 0.23 -0.38 16 5 C -0.01 -0.11 7.42 23.12 0.17 0.06 16 6 O -0.17 -3.79 7.69 -10.85 -0.08 -3.87 16 7 C 0.00 -0.11 6.89 24.04 0.17 0.05 16 8 C 0.60 19.79 7.83 86.59 0.68 20.47 16 9 O -0.55 -22.19 17.15 -4.13 -0.07 -22.26 16 10 N -0.60 -18.13 3.33 -815.95 -2.71 -20.84 16 11 C 0.10 2.25 6.15 86.86 0.53 2.78 16 12 C -0.13 -3.11 6.71 31.99 0.21 -2.89 16 13 C 0.17 5.86 3.61 46.18 0.17 6.03 16 14 H 0.08 2.75 8.09 -2.39 -0.02 2.73 16 15 N -0.74 -32.31 4.95 -317.33 -1.57 -33.88 16 16 C -0.24 -13.01 10.44 84.03 0.88 -12.13 16 17 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 18 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 19 N -0.98 -62.12 13.97 21.65 0.30 -61.82 16 20 Si 0.95 44.41 27.74 68.60 1.90 46.31 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.24 -9.89 6.52 99.48 0.65 -9.24 16 24 C 0.09 3.22 6.62 86.73 0.57 3.79 16 25 C -0.11 -3.06 10.81 23.82 0.26 -2.81 16 26 C 0.04 0.99 7.52 41.70 0.31 1.31 16 27 N -0.48 -10.89 10.32 -173.31 -1.79 -12.68 16 28 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.11 0.05 8.07 -2.38 -0.02 0.04 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.20 -0.21 8.06 -2.91 -0.02 -0.24 16 32 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 33 H 0.10 1.89 6.19 -2.39 -0.01 1.87 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.08 1.88 8.01 -2.38 -0.02 1.86 16 37 H 0.37 15.45 5.62 -92.71 -0.52 14.93 16 38 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.05 2.16 8.03 -2.39 -0.02 2.14 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.17 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -77.95 347.49 2.35 -75.61 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.49 Total: 19.03 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 5.88 Total: 14.40 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.77 Total: -129.23 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.15 Total: -26.13 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.90 Total: 46.31 kcal Total: -77.95 2.35 -75.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970540467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.484 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds