Wall clock time and date at job start Tue Mar 31 2020 10:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48499 * 109.47144 * 269.99726 * 3 2 1 5 5 H 1.48496 * 109.47335 * 29.99948 * 3 2 1 6 6 H 1.48506 * 109.47004 * 149.99474 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00347 * 189.09617 * 7 2 1 9 9 N 1.36937 * 119.99994 * 9.10173 * 7 2 1 10 10 C 1.48146 * 127.83961 * 15.58999 * 9 7 2 11 11 C 1.54390 * 104.62111 * 140.39311 * 10 9 7 12 12 H 1.08998 * 118.18795 * 244.21153 * 11 10 9 13 13 C 1.53005 * 118.11915 * 87.19223 * 11 10 9 14 14 H 1.08990 * 117.44171 * 16.06867 * 13 11 10 15 15 C 1.53005 * 117.43952 * 160.81200 * 13 11 10 16 16 N 1.46495 * 109.46690 * 184.99918 * 15 13 11 17 17 C 1.34776 * 119.99851 * 179.97438 * 16 15 13 18 18 O 1.21732 * 120.00143 * 0.02562 * 17 16 15 19 19 C 1.46495 * 120.00217 * 179.97438 * 17 16 15 20 20 C 1.37777 * 125.85843 * 180.02562 * 19 17 16 21 21 C 1.39943 * 107.68704 * 180.02562 * 20 19 17 22 22 O 1.35119 * 145.14074 * 180.02562 * 21 20 19 23 23 C 1.34375 * 109.62317 * 179.97438 * 22 21 20 24 24 C 1.34466 * 109.45115 * 0.02562 * 23 22 21 25 25 C 1.39137 * 107.40274 * 0.02562 * 21 20 19 26 26 N 1.37116 * 108.10736 * 359.73601 * 25 21 20 27 27 H 0.97002 * 125.73688 * 180.26348 * 26 25 21 28 28 C 1.53000 * 60.55579 * 268.46347 * 13 11 10 29 29 H 1.09010 * 119.53855 * 248.23061 * 28 13 11 30 30 C 1.48148 * 127.84258 * 195.56925 * 9 7 2 31 31 H 0.96999 * 119.99692 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.40334 * 21.61236 * 10 9 7 33 33 H 1.08997 * 110.41488 * 259.18391 * 10 9 7 34 34 H 1.08995 * 109.47284 * 305.00077 * 15 13 11 35 35 H 1.08999 * 109.46957 * 65.00178 * 15 13 11 36 36 H 0.96996 * 120.00377 * 0.02562 * 16 15 13 37 37 H 1.08000 * 126.15828 * 359.97170 * 20 19 17 38 38 H 1.07999 * 125.27519 * 179.97438 * 23 22 21 39 39 H 1.07992 * 126.41884 * 180.02562 * 24 23 22 40 40 H 1.09000 * 110.41069 * 100.81896 * 30 9 7 41 41 H 1.09007 * 110.50213 * 338.44223 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0801 -1.2080 0.1484 9 7 1.3384 -2.3806 -0.1865 10 6 -0.0341 -2.5711 -0.7105 11 6 0.0641 -3.8172 -1.6168 12 1 -0.1225 -3.6939 -2.6836 13 6 -0.1182 -5.1932 -0.9730 14 1 -0.5676 -5.2279 0.0193 15 6 -0.4670 -6.3627 -1.8959 16 7 -0.7173 -7.5613 -1.0917 17 6 -1.0447 -8.7212 -1.6949 18 8 -1.1319 -8.7730 -2.9080 19 6 -1.2945 -9.9200 -0.8908 20 6 -1.6349 -11.1627 -1.3789 21 6 -1.7829 -12.0231 -0.2852 22 8 -2.0741 -13.2845 0.1017 23 6 -2.0135 -13.3710 1.4413 24 6 -1.6834 -12.1721 1.9530 25 6 -1.5280 -11.2822 0.8646 26 7 -1.2248 -9.9995 0.4866 27 1 -1.0012 -9.2702 1.0857 28 6 1.2863 -4.5975 -1.0897 29 1 2.0101 -5.0556 -1.7639 30 6 1.8194 -3.7546 0.0888 31 1 -0.4849 0.8401 -0.0004 32 1 -0.3430 -1.7021 -1.2915 33 1 -0.7319 -2.7500 0.1074 34 1 -1.3599 -6.1179 -2.4710 35 1 0.3638 -6.5487 -2.5765 36 1 -0.6482 -7.5200 -0.1251 37 1 -1.7650 -11.4253 -2.4184 38 1 -2.2016 -14.2647 2.0177 39 1 -1.5594 -11.9336 2.9989 40 1 1.4111 -4.1185 1.0316 41 1 2.9089 -3.7802 0.1122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978274794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:09 Heat of formation + Delta-G solvation = 89.795094 kcal Electronic energy + Delta-G solvation = -24534.964284 eV Core-core repulsion = 20805.709507 eV Total energy + Delta-G solvation = -3729.254778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.24013 -40.42862 -39.15284 -38.49078 -35.17451 -33.44790 -32.69430 -31.13081 -30.78529 -29.03503 -27.29502 -27.14100 -25.11905 -23.37072 -21.99337 -21.26081 -21.01359 -20.64586 -19.78807 -19.32261 -18.65371 -17.40538 -16.86649 -16.58242 -16.42596 -15.65324 -15.47858 -15.03281 -14.65300 -14.23319 -14.06377 -13.90663 -13.75036 -13.51021 -13.13572 -13.08493 -12.80917 -12.71503 -12.07910 -11.92461 -11.31975 -11.17020 -10.88278 -10.72225 -10.48849 -10.41746 -10.34216 -10.17228 -9.79646 -9.55559 -9.23741 -9.08676 -8.94181 -8.69315 -8.19837 -6.92519 -5.84723 -3.19384 0.67311 1.91575 2.15882 2.34547 2.52795 3.00544 3.08180 3.35156 3.40513 3.42278 4.05063 4.22697 4.40026 4.42676 4.63474 4.79010 4.94135 5.14593 5.17145 5.21805 5.31244 5.36841 5.42575 5.45441 5.70604 5.76387 5.79890 5.82695 5.89544 5.98296 6.11525 6.16195 6.28149 6.47528 6.58300 6.62874 6.80887 6.84687 6.93519 7.23470 7.29703 7.47661 7.66875 7.88798 8.15782 9.06037 9.68759 10.45242 11.29554 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032916 B = 0.002071 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.443331 B =13518.825598 C =14005.532378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.159 4.159 12 H 0.105 0.895 13 C -0.153 4.153 14 H 0.102 0.898 15 C 0.155 3.845 16 N -0.720 5.720 17 C 0.588 3.412 18 O -0.523 6.523 19 C 0.008 3.992 20 C -0.079 4.079 21 C -0.041 4.041 22 O -0.168 6.168 23 C 0.012 3.988 24 C -0.203 4.203 25 C 0.012 3.988 26 N -0.531 5.531 27 H 0.421 0.579 28 C -0.171 4.171 29 H 0.104 0.896 30 C 0.154 3.846 31 H 0.255 0.745 32 H 0.091 0.909 33 H 0.023 0.977 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.397 0.603 37 H 0.161 0.839 38 H 0.212 0.788 39 H 0.154 0.846 40 H 0.023 0.977 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 -24.373 3.080 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.180 4.180 12 H 0.123 0.877 13 C -0.172 4.172 14 H 0.120 0.880 15 C 0.032 3.968 16 N -0.371 5.371 17 C 0.374 3.626 18 O -0.399 6.399 19 C -0.104 4.104 20 C -0.107 4.107 21 C -0.093 4.093 22 O -0.066 6.066 23 C -0.056 4.056 24 C -0.224 4.224 25 C -0.102 4.102 26 N -0.136 5.136 27 H 0.260 0.740 28 C -0.191 4.191 29 H 0.122 0.878 30 C 0.027 3.973 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.231 0.769 37 H 0.179 0.821 38 H 0.229 0.771 39 H 0.172 0.828 40 H 0.040 0.960 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.384 -24.157 2.080 24.639 hybrid contribution 0.588 1.235 1.094 1.752 sum -3.796 -22.921 3.174 23.449 Atomic orbital electron populations 1.69893 1.05067 1.25489 1.55722 1.24907 0.95670 0.98029 1.01689 0.86098 0.78677 0.83162 0.77690 1.21441 1.21635 1.20533 1.19002 0.90823 0.82343 1.43447 0.90548 1.45208 1.13341 0.99995 1.73212 1.21073 0.86842 0.92760 0.93563 1.24250 1.01986 0.91571 1.00185 0.87728 1.22526 1.00542 0.93902 1.00205 0.88000 1.20958 1.01556 0.81593 0.92651 1.45905 1.70668 1.09875 1.10609 1.16812 0.77446 0.81403 0.86966 1.90892 1.51927 1.84424 1.12624 1.20295 1.13122 0.95865 0.81118 1.19906 1.05719 0.87644 0.97385 1.19285 1.11241 0.83278 0.95464 1.84032 1.72638 1.27235 1.22699 1.24072 1.01927 0.99456 0.80149 1.20584 1.11879 0.91582 0.98348 1.19044 1.08842 0.86181 0.96098 1.41165 1.57481 1.08904 1.06012 0.74036 1.24017 0.89784 1.02581 1.02758 0.87808 1.21134 0.97190 0.86053 0.92875 0.93513 0.89103 0.95879 0.90589 0.90908 0.76938 0.82112 0.77109 0.82798 0.95953 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 10.86 55.49 0.60 -25.81 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.67 29.56 -169.99 -5.03 16.65 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.25 10.35 -15.06 -0.16 -6.41 16 8 H 0.08 2.03 7.85 -52.48 -0.41 1.62 16 9 N -0.59 -14.87 3.38 -168.86 -0.57 -15.44 16 10 C 0.18 4.26 5.70 -2.41 -0.01 4.25 16 11 C -0.16 -2.87 6.85 -89.22 -0.61 -3.49 16 12 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 13 C -0.15 -2.18 5.39 -90.61 -0.49 -2.67 16 14 H 0.10 1.42 8.04 -51.93 -0.42 1.01 16 15 C 0.16 1.94 5.95 -4.04 -0.02 1.92 16 16 N -0.72 -7.71 5.55 -61.68 -0.34 -8.05 16 17 C 0.59 7.28 7.78 -12.93 -0.10 7.18 16 18 O -0.52 -8.25 16.87 5.16 0.09 -8.17 16 19 C 0.01 0.09 7.03 -81.86 -0.58 -0.48 16 20 C -0.08 -0.89 10.58 -39.11 -0.41 -1.30 16 21 C -0.04 -0.46 8.20 -38.61 -0.32 -0.77 16 22 O -0.17 -1.67 10.68 3.22 0.03 -1.64 16 23 C 0.01 0.08 12.02 29.40 0.35 0.43 16 24 C -0.20 -1.46 10.89 -39.69 -0.43 -1.90 16 25 C 0.01 0.11 8.11 -83.95 -0.68 -0.57 16 26 N -0.53 -4.64 6.08 -7.04 -0.04 -4.69 16 27 H 0.42 2.48 8.16 -40.82 -0.33 2.14 16 28 C -0.17 -2.87 6.74 -89.22 -0.60 -3.47 16 29 H 0.10 1.61 8.12 -51.92 -0.42 1.19 16 30 C 0.15 3.09 7.04 -2.41 -0.02 3.07 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 36 H 0.40 3.24 7.49 -40.82 -0.31 2.94 16 37 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.21 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -33.64 349.63 -9.32 -42.95 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.16 Total: 3.39 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -4.17 Total: -4.46 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.35 Total: -53.99 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.12 Total: -9.80 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.64 -9.32 -42.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978274794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.749 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds