Wall clock time and date at job start Tue Mar 31 2020 10:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48499 * 109.47144 * 269.99726 * 3 2 1 5 5 H 1.48496 * 109.47335 * 29.99948 * 3 2 1 6 6 H 1.48506 * 109.47004 * 149.99474 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00347 * 189.09617 * 7 2 1 9 9 N 1.36937 * 119.99994 * 9.10173 * 7 2 1 10 10 C 1.48146 * 127.83961 * 15.58999 * 9 7 2 11 11 C 1.54390 * 104.62111 * 140.39311 * 10 9 7 12 12 H 1.08998 * 118.18795 * 244.21153 * 11 10 9 13 13 C 1.53005 * 118.11915 * 87.19223 * 11 10 9 14 14 H 1.08990 * 117.44171 * 16.06867 * 13 11 10 15 15 C 1.53005 * 117.43952 * 160.81200 * 13 11 10 16 16 N 1.46495 * 109.46690 * 184.99918 * 15 13 11 17 17 C 1.34776 * 119.99851 * 179.97438 * 16 15 13 18 18 O 1.21732 * 120.00143 * 0.02562 * 17 16 15 19 19 C 1.46495 * 120.00217 * 179.97438 * 17 16 15 20 20 C 1.37777 * 125.85843 * 180.02562 * 19 17 16 21 21 C 1.39943 * 107.68704 * 180.02562 * 20 19 17 22 22 O 1.35119 * 145.14074 * 180.02562 * 21 20 19 23 23 C 1.34375 * 109.62317 * 179.97438 * 22 21 20 24 24 C 1.34466 * 109.45115 * 0.02562 * 23 22 21 25 25 C 1.39137 * 107.40274 * 0.02562 * 21 20 19 26 26 N 1.37116 * 108.10736 * 359.73601 * 25 21 20 27 27 H 0.97002 * 125.73688 * 180.26348 * 26 25 21 28 28 C 1.53000 * 60.55579 * 268.46347 * 13 11 10 29 29 H 1.09010 * 119.53855 * 248.23061 * 28 13 11 30 30 C 1.48148 * 127.84258 * 195.56925 * 9 7 2 31 31 H 0.96999 * 119.99692 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.40334 * 21.61236 * 10 9 7 33 33 H 1.08997 * 110.41488 * 259.18391 * 10 9 7 34 34 H 1.08995 * 109.47284 * 305.00077 * 15 13 11 35 35 H 1.08999 * 109.46957 * 65.00178 * 15 13 11 36 36 H 0.96996 * 120.00377 * 0.02562 * 16 15 13 37 37 H 1.08000 * 126.15828 * 359.97170 * 20 19 17 38 38 H 1.07999 * 125.27519 * 179.97438 * 23 22 21 39 39 H 1.07992 * 126.41884 * 180.02562 * 24 23 22 40 40 H 1.09000 * 110.41069 * 100.81896 * 30 9 7 41 41 H 1.09007 * 110.50213 * 338.44223 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0801 -1.2080 0.1484 9 7 1.3384 -2.3806 -0.1865 10 6 -0.0341 -2.5711 -0.7105 11 6 0.0641 -3.8172 -1.6168 12 1 -0.1225 -3.6939 -2.6836 13 6 -0.1182 -5.1932 -0.9730 14 1 -0.5676 -5.2279 0.0193 15 6 -0.4670 -6.3627 -1.8959 16 7 -0.7173 -7.5613 -1.0917 17 6 -1.0447 -8.7212 -1.6949 18 8 -1.1319 -8.7730 -2.9080 19 6 -1.2945 -9.9200 -0.8908 20 6 -1.6349 -11.1627 -1.3789 21 6 -1.7829 -12.0231 -0.2852 22 8 -2.0741 -13.2845 0.1017 23 6 -2.0135 -13.3710 1.4413 24 6 -1.6834 -12.1721 1.9530 25 6 -1.5280 -11.2822 0.8646 26 7 -1.2248 -9.9995 0.4866 27 1 -1.0012 -9.2702 1.0857 28 6 1.2863 -4.5975 -1.0897 29 1 2.0101 -5.0556 -1.7639 30 6 1.8194 -3.7546 0.0888 31 1 -0.4849 0.8401 -0.0004 32 1 -0.3430 -1.7021 -1.2915 33 1 -0.7319 -2.7500 0.1074 34 1 -1.3599 -6.1179 -2.4710 35 1 0.3638 -6.5487 -2.5765 36 1 -0.6482 -7.5200 -0.1251 37 1 -1.7650 -11.4253 -2.4184 38 1 -2.2016 -14.2647 2.0177 39 1 -1.5594 -11.9336 2.9989 40 1 1.4111 -4.1185 1.0316 41 1 2.9089 -3.7802 0.1122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978274794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:09 Heat of formation + Delta-G solvation = 67.049477 kcal Electronic energy + Delta-G solvation = -24535.950608 eV Core-core repulsion = 20805.709507 eV Total energy + Delta-G solvation = -3730.241101 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.90813 -41.32310 -40.45076 -39.51625 -36.45103 -35.08261 -33.32717 -32.78680 -31.67302 -29.99008 -28.89921 -28.49629 -26.69390 -24.31633 -22.81852 -22.69282 -21.86008 -21.72104 -20.93315 -20.78492 -19.42187 -18.84073 -18.11948 -17.41657 -17.28775 -16.78249 -16.49680 -16.43707 -16.04263 -15.45134 -15.31844 -14.76355 -14.72566 -14.59529 -14.53489 -14.35563 -13.98052 -13.65827 -13.37589 -13.19412 -12.90068 -12.77548 -12.74375 -12.32457 -11.99375 -11.95089 -11.78468 -11.51745 -11.07219 -10.95965 -10.73505 -10.58923 -10.19914 -9.65723 -8.91792 -8.89005 -7.93033 -5.29157 -0.07507 1.19800 1.45600 1.47496 1.49330 1.56072 1.69250 1.71979 2.18497 2.23240 2.46533 2.72041 3.24613 3.56995 3.62487 3.67178 3.74229 3.83854 3.96799 4.15884 4.25702 4.31453 4.41210 4.48319 4.55312 4.62517 4.69522 4.75243 4.77023 4.92941 5.01483 5.03926 5.10433 5.31920 5.35832 5.43723 5.44326 5.52699 5.54873 5.66128 6.14687 6.17363 6.26890 6.43428 6.97035 7.00310 7.67536 8.45378 9.20579 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032916 B = 0.002071 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.443331 B =13518.825598 C =14005.532378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.188 3.812 11 C -0.175 4.175 12 H 0.114 0.886 13 C -0.109 4.109 14 H 0.111 0.889 15 C 0.163 3.837 16 N -0.708 5.708 17 C 0.593 3.407 18 O -0.562 6.562 19 C -0.004 4.004 20 C -0.091 4.091 21 C -0.077 4.077 22 O -0.187 6.187 23 C 0.028 3.972 24 C -0.216 4.216 25 C 0.013 3.987 26 N -0.519 5.519 27 H 0.434 0.566 28 C -0.161 4.161 29 H 0.125 0.875 30 C 0.148 3.852 31 H 0.250 0.750 32 H 0.052 0.948 33 H 0.003 0.997 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.411 0.589 37 H 0.159 0.841 38 H 0.258 0.742 39 H 0.182 0.818 40 H 0.029 0.971 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.672 -26.450 4.418 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.063 3.937 11 C -0.196 4.196 12 H 0.132 0.868 13 C -0.128 4.128 14 H 0.129 0.871 15 C 0.040 3.960 16 N -0.359 5.359 17 C 0.381 3.619 18 O -0.441 6.441 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.128 4.128 22 O -0.085 6.085 23 C -0.039 4.039 24 C -0.237 4.237 25 C -0.102 4.102 26 N -0.124 5.124 27 H 0.276 0.724 28 C -0.180 4.180 29 H 0.143 0.857 30 C 0.023 3.977 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.248 0.752 37 H 0.176 0.824 38 H 0.274 0.726 39 H 0.199 0.801 40 H 0.047 0.953 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.733 -26.245 3.459 26.734 hybrid contribution 0.373 1.735 0.778 1.938 sum -3.361 -24.510 4.237 25.099 Atomic orbital electron populations 1.70087 1.06469 1.25717 1.57199 1.25736 0.96525 1.01283 1.02195 0.85071 0.77791 0.78920 0.77502 1.21325 1.22062 1.19146 1.19375 0.91325 0.83690 1.42478 0.90197 1.45535 1.13915 1.01251 1.73853 1.20804 0.85987 0.93751 0.93185 1.23927 1.04526 0.91211 0.99914 0.86767 1.22403 0.98065 0.92034 1.00341 0.87079 1.20774 1.01657 0.81334 0.92227 1.45694 1.70010 1.08900 1.11278 1.16893 0.76685 0.81858 0.86503 1.90872 1.53826 1.85056 1.14320 1.19943 1.14660 0.95125 0.81961 1.20041 1.05813 0.88325 0.97753 1.19444 1.13142 0.84242 0.95986 1.84031 1.73035 1.26818 1.24624 1.25096 0.99073 1.00859 0.78874 1.21014 1.12384 0.91122 0.99141 1.19534 1.07668 0.86282 0.96703 1.41068 1.56765 1.09203 1.05365 0.72440 1.23943 0.90578 1.02211 1.01297 0.85730 1.21300 0.97712 0.84269 0.94423 0.94136 0.92983 0.97877 0.90609 0.90724 0.75217 0.82376 0.72598 0.80063 0.95322 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.43 10.86 21.65 0.24 -56.19 16 2 C -0.06 -3.59 5.40 84.86 0.46 -3.13 16 3 Si 0.98 45.16 29.56 68.60 2.03 47.19 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.24 -13.30 10.35 84.03 0.87 -12.43 16 8 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 9 N -0.62 -31.41 3.38 -688.15 -2.33 -33.74 16 10 C 0.19 8.99 5.70 86.53 0.49 9.48 16 11 C -0.18 -6.19 6.85 -9.88 -0.07 -6.26 16 12 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 13 C -0.11 -2.87 5.39 -10.79 -0.06 -2.93 16 14 H 0.11 2.79 8.04 -2.39 -0.02 2.78 16 15 C 0.16 3.71 5.95 86.38 0.51 4.22 16 16 N -0.71 -13.61 5.55 -467.24 -2.59 -16.20 16 17 C 0.59 14.07 7.78 86.39 0.67 14.74 16 18 O -0.56 -17.57 16.87 -4.45 -0.08 -17.64 16 19 C 0.00 -0.09 7.03 40.19 0.28 0.19 16 20 C -0.09 -2.07 10.58 22.57 0.24 -1.83 16 21 C -0.08 -1.66 8.20 22.90 0.19 -1.47 16 22 O -0.19 -3.44 10.68 -11.40 -0.12 -3.56 16 23 C 0.03 0.27 12.02 66.96 0.80 1.08 16 24 C -0.22 -2.45 10.89 22.20 0.24 -2.21 16 25 C 0.01 0.22 8.11 39.32 0.32 0.54 16 26 N -0.52 -8.15 6.08 -176.19 -1.07 -9.22 16 27 H 0.43 4.05 8.16 -92.71 -0.76 3.30 16 28 C -0.16 -5.03 6.74 -9.89 -0.07 -5.10 16 29 H 0.12 3.46 8.12 -2.38 -0.02 3.44 16 30 C 0.15 5.78 7.04 86.53 0.61 6.39 16 31 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.05 2.86 6.51 -2.39 -0.02 2.85 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 1.76 7.94 -2.39 -0.02 1.74 16 36 H 0.41 5.54 7.49 -92.71 -0.69 4.85 16 37 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 38 H 0.26 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -75.68 349.63 1.21 -74.47 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -0.36 Total: 13.63 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 5.50 Total: 1.27 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -5.75 Total: -115.35 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.20 Total: -21.21 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -75.68 1.21 -74.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978274794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.523 kcal (2) G-P(sol) polarization free energy of solvation -75.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds