Wall clock time and date at job start Tue Mar 31 2020 10:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99394 * 2 1 4 4 H 1.48497 * 109.47119 * 269.99601 * 3 2 1 5 5 H 1.48496 * 109.47524 * 29.99945 * 3 2 1 6 6 H 1.48508 * 109.46930 * 150.00186 * 3 2 1 7 7 C 1.38811 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99982 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99642 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99845 * 179.97438 * 9 7 2 11 11 C 1.53034 * 109.46298 * 205.00133 * 10 9 7 12 12 C 1.53196 * 109.31234 * 178.62858 * 11 10 9 13 13 N 1.46935 * 108.77293 * 54.63890 * 12 11 10 14 14 C 1.34769 * 120.62947 * 126.36832 * 13 12 11 15 15 O 1.21654 * 119.99910 * 187.68655 * 14 13 12 16 16 C 1.46992 * 120.00283 * 7.68578 * 14 13 12 17 17 C 1.35841 * 125.11911 * 187.80233 * 16 14 13 18 18 C 1.46097 * 106.07058 * 180.02562 * 17 16 14 19 19 C 1.39448 * 135.08314 * 180.02562 * 18 17 16 20 20 N 1.31676 * 120.07720 * 179.97438 * 19 18 17 21 21 C 1.32303 * 122.14405 * 0.02562 * 20 19 18 22 22 C 1.37755 * 121.58402 * 0.03147 * 21 20 19 23 23 C 1.39241 * 118.95137 * 359.93043 * 22 21 20 24 24 O 1.34284 * 134.37290 * 180.02562 * 23 22 21 25 25 C 1.46921 * 118.73450 * 306.63712 * 13 12 11 26 26 C 1.52756 * 109.00727 * 53.31613 * 25 13 12 27 27 H 0.97000 * 120.00323 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00392 * 0.02562 * 9 7 2 29 29 H 1.09005 * 109.46322 * 324.98076 * 10 9 7 30 30 H 1.09001 * 109.49771 * 58.68222 * 11 10 9 31 31 H 1.08996 * 109.52510 * 298.59326 * 11 10 9 32 32 H 1.08994 * 109.58863 * 294.85124 * 12 11 10 33 33 H 1.08997 * 109.70385 * 174.49147 * 12 11 10 34 34 H 1.07998 * 126.96822 * 359.97438 * 17 16 14 35 35 H 1.07999 * 119.95999 * 359.96838 * 19 18 17 36 36 H 1.08001 * 119.20813 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.52208 * 179.97438 * 22 21 20 38 38 H 1.09006 * 109.58238 * 173.14601 * 25 13 12 39 39 H 1.08992 * 109.59092 * 293.57050 * 25 13 12 40 40 H 1.09004 * 109.56305 * 185.54840 * 26 25 13 41 41 H 1.09001 * 109.36608 * 65.49318 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 0.0011 11 6 5.5000 -2.2576 0.6102 12 6 6.2501 -3.5929 0.6411 13 7 6.2667 -4.1575 -0.7153 14 6 7.4287 -4.5185 -1.2947 15 8 7.4473 -4.8525 -2.4643 16 6 8.6738 -4.5087 -0.5133 17 6 9.9176 -4.7050 -1.0228 18 6 10.8375 -4.6100 0.1082 19 6 12.2190 -4.7118 0.2688 20 7 12.7568 -4.5710 1.4624 21 6 12.0268 -4.3323 2.5397 22 6 10.6557 -4.2180 2.4713 23 6 10.0286 -4.3564 1.2359 24 8 8.7530 -4.3055 0.8193 25 6 4.9929 -4.3154 -1.4303 26 6 4.2563 -2.9771 -1.4358 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3619 -0.0004 29 1 3.5653 -3.2054 0.5920 30 1 5.3968 -1.8747 1.6255 31 1 6.0569 -1.5414 0.0061 32 1 5.7432 -4.2813 1.3172 33 1 7.2727 -3.4321 0.9824 34 1 10.1745 -4.8940 -2.0546 35 1 12.8485 -4.9065 -0.5869 36 1 12.5176 -4.2247 3.4957 37 1 10.0764 -4.0233 3.3619 38 1 5.1862 -4.6288 -2.4563 39 1 4.3814 -5.0638 -0.9265 40 1 3.2679 -3.1064 -1.8768 41 1 4.8246 -2.2542 -2.0211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996760999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:43 Heat of formation + Delta-G solvation = 13.701244 kcal Electronic energy + Delta-G solvation = -25656.538998 eV Core-core repulsion = 21923.984543 eV Total energy + Delta-G solvation = -3732.554454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.90869 -41.26082 -39.94844 -38.96593 -36.39199 -34.15103 -34.00096 -32.92060 -32.25922 -31.72927 -30.77221 -27.08127 -25.92297 -24.64062 -24.16705 -23.88344 -22.85511 -21.96475 -20.92554 -19.77605 -19.31343 -18.72743 -17.81565 -17.46719 -16.83492 -16.69973 -16.55330 -16.18102 -15.92721 -15.56312 -15.35275 -15.06032 -14.94148 -14.65684 -14.49144 -14.42854 -14.35129 -14.21925 -13.51255 -13.23329 -12.96128 -12.72332 -12.58871 -12.25598 -12.08084 -12.02401 -11.80204 -11.66542 -11.51022 -11.28306 -10.96025 -10.76483 -10.53179 -9.95677 -9.47570 -9.33109 -8.02454 -5.36021 -0.69122 0.13259 0.59307 1.09859 1.36884 1.39958 1.47121 1.75137 1.91374 2.47820 2.68738 2.99994 3.28863 3.30657 3.43494 3.49443 3.71133 3.75290 3.82790 4.02977 4.05380 4.08850 4.29097 4.31171 4.32189 4.48723 4.57178 4.64474 4.69688 4.74751 4.76421 4.87103 4.96855 5.00334 5.04879 5.16447 5.32225 5.39801 5.48958 5.70875 5.77559 6.11967 6.21558 6.73305 6.86251 7.07394 7.83401 8.01779 9.18887 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.002972 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.973475 B = 9417.791107 C =10206.436628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.952 3.048 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.250 1.250 7 C -0.226 4.226 8 H 0.060 0.940 9 N -0.751 5.751 10 C 0.176 3.824 11 C -0.132 4.132 12 C 0.106 3.894 13 N -0.595 5.595 14 C 0.596 3.404 15 O -0.549 6.549 16 C -0.043 4.043 17 C -0.084 4.084 18 C -0.214 4.214 19 C 0.176 3.824 20 N -0.513 5.513 21 C 0.121 3.879 22 C -0.161 4.161 23 C 0.081 3.919 24 O -0.174 6.174 25 C 0.121 3.879 26 C -0.141 4.141 27 H 0.257 0.743 28 H 0.364 0.636 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.189 0.811 35 H 0.191 0.809 36 H 0.202 0.798 37 H 0.172 0.828 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.166 -10.977 4.802 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.780 3.220 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.174 1.174 7 C -0.357 4.357 8 H 0.078 0.922 9 N -0.394 5.394 10 C 0.068 3.932 11 C -0.171 4.171 12 C -0.015 4.015 13 N -0.325 5.325 14 C 0.384 3.616 15 O -0.430 6.430 16 C -0.092 4.092 17 C -0.105 4.105 18 C -0.218 4.218 19 C 0.012 3.988 20 N -0.224 5.224 21 C -0.028 4.028 22 C -0.182 4.182 23 C 0.026 3.974 24 O -0.075 6.075 25 C -0.001 4.001 26 C -0.182 4.182 27 H 0.066 0.934 28 H 0.197 0.803 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.206 0.794 35 H 0.208 0.792 36 H 0.219 0.781 37 H 0.189 0.811 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 27.550 -11.238 4.559 30.101 hybrid contribution -1.352 1.321 -0.442 1.941 sum 26.198 -9.917 4.116 28.313 Atomic orbital electron populations 1.69876 1.07100 1.26573 1.59911 1.25474 0.96048 1.01140 1.02939 0.85451 0.78779 0.79964 0.77813 1.21047 1.22404 1.17426 1.19024 0.82507 0.93414 1.40733 0.92171 1.42811 1.02502 1.03871 1.90203 1.20405 0.91525 0.87448 0.93835 1.22137 0.95064 0.97391 1.02526 1.22268 1.03169 0.94379 0.81693 1.48150 1.06131 1.60605 1.17622 1.16947 0.81545 0.77802 0.85266 1.90855 1.85268 1.51198 1.15640 1.21845 0.95933 1.10111 0.81278 1.22936 0.88948 0.98201 1.00454 1.21078 0.97034 1.10154 0.93490 1.22890 0.89516 0.90280 0.96103 1.67903 1.40496 1.14595 0.99365 1.23238 0.89183 0.91912 0.98502 1.21448 0.95787 1.06011 0.94906 1.20520 0.82376 0.97932 0.96596 1.84183 1.26356 1.74414 1.22565 1.21604 0.82602 0.97560 0.98336 1.22371 0.99844 0.96256 0.99734 0.93435 0.80302 0.92834 0.89187 0.92011 0.89013 0.86786 0.79412 0.79241 0.78147 0.81060 0.89334 0.89375 0.91900 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.46 13.97 21.65 0.30 -62.16 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.95 44.94 27.74 68.60 1.90 46.84 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16 7 C -0.23 -12.45 10.41 84.03 0.87 -11.57 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 9 N -0.75 -33.44 4.92 -322.82 -1.59 -35.02 16 10 C 0.18 6.10 2.73 45.02 0.12 6.22 16 11 C -0.13 -3.52 5.55 30.67 0.17 -3.35 16 12 C 0.11 2.33 6.08 86.36 0.53 2.85 16 13 N -0.59 -15.04 2.98 -824.11 -2.45 -17.50 16 14 C 0.60 15.88 7.65 86.54 0.66 16.54 16 15 O -0.55 -17.44 16.26 -4.20 -0.07 -17.51 16 16 C -0.04 -0.95 6.72 24.01 0.16 -0.79 16 17 C -0.08 -1.57 10.81 23.75 0.26 -1.31 16 18 C -0.21 -3.70 6.43 -20.25 -0.13 -3.83 16 19 C 0.18 2.49 11.28 85.01 0.96 3.45 16 20 N -0.51 -7.77 10.34 -195.04 -2.02 -9.78 16 21 C 0.12 1.35 11.13 84.51 0.94 2.29 16 22 C -0.16 -1.98 10.13 22.40 0.23 -1.75 16 23 C 0.08 1.43 7.48 23.21 0.17 1.61 16 24 O -0.17 -3.48 7.10 -9.65 -0.07 -3.55 16 25 C 0.12 3.25 6.42 86.22 0.55 3.81 16 26 C -0.14 -4.63 5.64 30.53 0.17 -4.46 16 27 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.36 15.71 5.66 -92.71 -0.52 15.18 16 29 H 0.05 1.92 8.08 -2.38 -0.02 1.90 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.11 2.26 4.23 -23.91 -0.10 2.16 16 34 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.20 0.79 8.06 -2.91 -0.02 0.76 16 37 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.09 2.46 7.00 -2.38 -0.02 2.44 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -72.65 340.43 2.54 -70.11 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.40 Total: 22.16 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 6.14 Total: 6.41 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -5.76 Total: -124.47 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.14 Total: -21.06 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.90 Total: 46.84 kcal Total: -72.65 2.54 -70.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996760999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.814 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds