Wall clock time and date at job start Tue Mar 31 2020 10:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86809 * 120.00085 * 2 1 4 4 H 1.48497 * 109.47006 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46967 * 299.99573 * 3 2 1 6 6 H 1.48498 * 109.47075 * 59.99429 * 3 2 1 7 7 C 1.38811 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00432 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99421 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99674 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.45942 * 204.99884 * 10 9 7 12 12 C 1.53191 * 109.31198 * 178.62739 * 11 10 9 13 13 N 1.46921 * 108.77833 * 54.63416 * 12 11 10 14 14 C 1.34780 * 120.63441 * 126.36648 * 13 12 11 15 15 O 1.21561 * 120.00363 * 187.78755 * 14 13 12 16 16 C 1.47788 * 119.99737 * 7.79391 * 14 13 12 17 17 N 1.32821 * 120.07475 * 7.51374 * 16 14 13 18 18 C 1.31669 * 122.01295 * 179.97438 * 17 16 14 19 19 C 1.38393 * 121.69920 * 0.02562 * 18 17 16 20 20 C 1.38854 * 119.13726 * 359.97438 * 19 18 17 21 21 O 1.34429 * 134.63895 * 180.02562 * 20 19 18 22 22 C 1.34447 * 110.85338 * 179.97438 * 21 20 19 23 23 C 1.34312 * 110.16696 * 359.97438 * 22 21 20 24 24 C 1.40199 * 120.07348 * 187.50230 * 16 14 13 25 25 C 1.46928 * 118.73850 * 306.64461 * 13 12 11 26 26 C 1.52759 * 109.01042 * 53.30495 * 25 13 12 27 27 H 0.97006 * 120.00223 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00287 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.45924 * 324.96687 * 10 9 7 30 30 H 1.09004 * 109.49875 * 58.67390 * 11 10 9 31 31 H 1.08996 * 109.49759 * 298.57544 * 11 10 9 32 32 H 1.09001 * 109.59024 * 294.84604 * 12 11 10 33 33 H 1.09008 * 109.70607 * 174.49307 * 12 11 10 34 34 H 1.08004 * 119.14862 * 180.02562 * 18 17 16 35 35 H 1.08008 * 120.43130 * 179.97438 * 19 18 17 36 36 H 1.07998 * 124.91799 * 179.97438 * 22 21 20 37 37 H 1.07994 * 126.89513 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.58967 * 173.14114 * 25 13 12 39 39 H 1.08997 * 109.58361 * 293.56632 * 25 13 12 40 40 H 1.08996 * 109.56857 * 185.55320 * 26 25 13 41 41 H 1.09000 * 109.35832 * 65.50070 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.1803 -4.7522 -0.6093 12 6 1.9617 -6.0694 -0.6390 13 7 2.4410 -6.3658 0.7178 14 6 2.1721 -7.5526 1.2972 15 8 2.4491 -7.7347 2.4668 16 6 1.5406 -8.6327 0.5106 17 7 1.3735 -8.4916 -0.7995 18 6 0.8162 -9.4292 -1.5370 19 6 0.3711 -10.6186 -0.9869 20 6 0.5166 -10.8284 0.3779 21 8 0.2078 -11.8319 1.2175 22 6 0.5683 -11.5302 2.4771 23 6 1.1317 -10.3116 2.5182 24 6 1.1169 -9.8087 1.1455 25 6 3.2138 -5.3414 1.4335 26 6 2.4232 -4.0344 1.4379 27 1 -0.4851 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.9683 -3.5504 -0.5894 30 1 0.9013 -4.4715 -1.6250 31 1 0.2813 -4.8761 -0.0056 32 1 2.8121 -5.9748 -1.3144 33 1 1.3116 -6.8748 -0.9810 34 1 0.7036 -9.2659 -2.5987 35 1 -0.0835 -11.3737 -1.6112 36 1 0.4257 -12.1744 3.3321 37 1 1.5169 -9.8045 3.3903 38 1 3.3875 -5.6653 2.4597 39 1 4.1683 -5.1862 0.9306 40 1 3.0288 -3.2429 1.8794 41 1 1.5124 -4.1650 2.0223 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996821780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:45 Heat of formation + Delta-G solvation = 21.208779 kcal Electronic energy + Delta-G solvation = -25838.105234 eV Core-core repulsion = 22105.876331 eV Total energy + Delta-G solvation = -3732.228903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.76085 -41.49642 -39.77691 -38.72313 -36.19442 -34.01177 -33.97462 -33.07399 -31.86250 -31.22529 -30.60404 -26.98798 -25.89917 -24.55976 -24.20594 -23.84908 -22.99694 -21.71664 -20.48059 -19.20167 -19.06225 -18.64773 -17.72804 -17.42874 -17.12683 -16.74863 -16.48334 -16.33305 -15.63417 -15.43787 -15.34143 -15.24221 -14.73898 -14.72265 -14.37047 -14.10493 -13.90342 -13.80996 -13.32795 -13.11393 -12.92125 -12.85536 -12.66353 -12.16942 -12.13109 -11.96079 -11.69653 -11.58810 -11.43814 -11.34169 -10.91616 -10.59962 -10.02791 -9.76223 -9.37252 -9.00660 -7.93616 -5.22361 -0.78333 0.04870 1.22337 1.47347 1.48086 1.58041 1.58600 1.60566 1.85928 2.56195 2.67680 2.95581 3.22480 3.39378 3.48624 3.76637 3.84996 3.92589 4.02461 4.08977 4.18274 4.26316 4.30135 4.42454 4.44695 4.59146 4.63900 4.75066 4.79488 4.86399 4.90970 4.98970 5.07237 5.10364 5.24411 5.30371 5.41283 5.50320 5.55377 5.72001 5.89169 6.28040 6.30600 6.58330 7.00119 7.34154 8.09708 8.33525 9.30228 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028955 B = 0.002804 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.790111 B = 9982.300854 C =10404.798507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.172 3.828 11 C -0.129 4.129 12 C 0.081 3.919 13 N -0.585 5.585 14 C 0.561 3.439 15 O -0.568 6.568 16 C 0.108 3.892 17 N -0.459 5.459 18 C 0.102 3.898 19 C -0.112 4.112 20 C 0.065 3.935 21 O -0.188 6.188 22 C 0.039 3.961 23 C -0.220 4.220 24 C -0.153 4.153 25 C 0.118 3.882 26 C -0.137 4.137 27 H 0.250 0.750 28 H 0.371 0.629 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.163 0.837 34 H 0.220 0.780 35 H 0.190 0.810 36 H 0.263 0.737 37 H 0.160 0.840 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -28.745 -2.349 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.064 3.936 11 C -0.168 4.168 12 C -0.041 4.041 13 N -0.315 5.315 14 C 0.349 3.651 15 O -0.447 6.447 16 C -0.032 4.032 17 N -0.173 5.173 18 C -0.051 4.051 19 C -0.132 4.132 20 C 0.010 3.990 21 O -0.088 6.088 22 C -0.025 4.025 23 C -0.240 4.240 24 C -0.157 4.157 25 C -0.004 4.004 26 C -0.178 4.178 27 H 0.059 0.941 28 H 0.202 0.798 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.179 0.821 34 H 0.236 0.764 35 H 0.207 0.793 36 H 0.279 0.721 37 H 0.178 0.822 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.016 -28.198 -2.248 28.360 hybrid contribution -0.257 1.063 0.991 1.476 sum 1.760 -27.136 -1.257 27.222 Atomic orbital electron populations 1.69831 1.06652 1.25860 1.59922 1.25558 0.96358 1.01072 1.04055 0.85095 0.78326 0.79956 0.76539 1.18914 1.22000 1.22397 1.19671 0.91453 0.85158 1.40410 0.90501 1.42677 1.05383 1.01042 1.88540 1.20455 0.94706 0.85112 0.93335 1.22123 0.98294 0.94936 1.01401 1.23202 1.00876 0.98958 0.81077 1.48101 1.52147 1.13483 1.17793 1.18131 0.78641 0.82481 0.85864 1.90703 1.55359 1.82008 1.16639 1.20435 0.99532 0.92663 0.90611 1.67488 1.15128 1.30300 1.04338 1.23555 0.92441 0.87128 1.02009 1.21705 1.01494 1.00795 0.89228 1.20101 0.98602 0.86717 0.93540 1.84010 1.68116 1.39066 1.17617 1.25086 0.95676 0.96736 0.84981 1.22775 1.07816 0.97336 0.96098 1.20887 1.02676 0.95797 0.96369 1.21553 0.94253 0.86598 0.98039 1.22354 0.99331 0.95990 1.00077 0.94138 0.79800 0.93181 0.90181 0.93711 0.90369 0.82090 0.76374 0.79301 0.72144 0.82213 0.90134 0.89685 0.91977 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 3 Si 0.97 46.72 29.55 68.60 2.03 48.74 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.24 -13.16 9.93 84.03 0.83 -12.33 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -37.95 5.12 -322.82 -1.65 -39.60 16 10 C 0.17 6.95 2.73 45.02 0.12 7.07 16 11 C -0.13 -4.33 5.55 30.67 0.17 -4.16 16 12 C 0.08 2.23 5.92 86.36 0.51 2.75 16 13 N -0.58 -18.28 2.98 -823.21 -2.45 -20.73 16 14 C 0.56 18.33 7.65 86.77 0.66 18.99 16 15 O -0.57 -21.10 14.68 -3.91 -0.06 -21.15 16 16 C 0.11 2.93 6.63 42.00 0.28 3.21 16 17 N -0.46 -9.83 6.09 -184.54 -1.12 -10.96 16 18 C 0.10 1.32 11.13 84.75 0.94 2.27 16 19 C -0.11 -1.34 10.13 22.45 0.23 -1.11 16 20 C 0.07 1.21 7.48 23.11 0.17 1.38 16 21 O -0.19 -3.06 10.57 -5.12 -0.05 -3.11 16 22 C 0.04 0.53 11.97 66.92 0.80 1.33 16 23 C -0.22 -4.75 10.32 23.44 0.24 -4.51 16 24 C -0.15 -3.77 6.16 -20.05 -0.12 -3.89 16 25 C 0.12 3.81 6.42 86.22 0.55 4.36 16 26 C -0.14 -5.22 5.64 30.53 0.17 -5.05 16 27 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 28 H 0.37 20.66 7.80 -92.71 -0.72 19.94 16 29 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 30 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.16 4.03 3.94 -72.31 -0.29 3.75 16 34 H 0.22 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 36 H 0.26 0.66 8.06 -2.91 -0.02 0.63 16 37 H 0.16 3.77 7.32 -2.91 -0.02 3.75 16 38 H 0.08 2.68 7.00 -2.39 -0.02 2.66 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -76.85 339.85 3.08 -73.77 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.07 Total: 27.01 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 6.04 Total: 6.19 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -4.95 Total: -131.45 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.11 Total: -24.26 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -76.85 3.08 -73.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996821780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.974 kcal (2) G-P(sol) polarization free energy of solvation -76.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds