Wall clock time and date at job start Tue Mar 31 2020 10:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00000 * 2 1 4 4 H 1.48503 * 109.47602 * 180.27533 * 3 2 1 5 5 H 1.48498 * 109.47098 * 300.27568 * 3 2 1 6 6 H 1.48505 * 109.47373 * 60.27264 * 3 2 1 7 7 C 1.38809 * 119.99944 * 180.27411 * 2 1 3 8 8 H 1.08007 * 120.00020 * 179.72293 * 7 2 1 9 9 N 1.36938 * 120.00404 * 359.72824 * 7 2 1 10 10 C 1.46492 * 120.00254 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.50233 * 34.92902 * 10 9 7 12 12 C 1.53039 * 109.50058 * 154.99762 * 10 9 7 13 13 C 1.53036 * 109.54048 * 181.31209 * 12 10 9 14 14 C 1.53196 * 109.31349 * 298.63252 * 13 12 10 15 15 N 1.46931 * 108.77288 * 54.63673 * 14 13 12 16 16 C 1.34774 * 120.63359 * 126.41484 * 15 14 13 17 17 O 1.21557 * 120.00182 * 176.29370 * 16 15 14 18 18 C 1.47787 * 119.99900 * 356.29510 * 16 15 14 19 19 N 1.32824 * 120.07033 * 39.64275 * 18 16 15 20 20 C 1.31673 * 122.00902 * 180.02562 * 19 18 16 21 21 C 1.38395 * 121.70167 * 359.97438 * 20 19 18 22 22 C 1.38861 * 119.13494 * 0.02562 * 21 20 19 23 23 O 1.34425 * 134.63812 * 179.97438 * 22 21 20 24 24 C 1.34453 * 110.85417 * 180.02562 * 23 22 21 25 25 C 1.34310 * 110.16258 * 0.02562 * 24 23 22 26 26 C 1.40196 * 120.07543 * 219.36945 * 18 16 15 27 27 C 1.46923 * 118.73838 * 306.38915 * 15 14 13 28 28 H 0.97001 * 120.00241 * 359.72737 * 1 2 3 29 29 H 0.97003 * 119.99311 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.45985 * 301.33014 * 12 10 9 31 31 H 1.09004 * 109.46201 * 61.30086 * 12 10 9 32 32 H 1.09003 * 109.50075 * 58.58197 * 13 12 10 33 33 H 1.09000 * 109.50360 * 178.68615 * 13 12 10 34 34 H 1.09001 * 109.58934 * 174.42191 * 14 13 12 35 35 H 1.08991 * 109.58956 * 294.84751 * 14 13 12 36 36 H 1.08002 * 119.14839 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.43077 * 180.02562 * 21 20 19 38 38 H 1.07993 * 124.91790 * 180.02562 * 24 23 22 39 39 H 1.07997 * 126.88934 * 180.02562 * 25 24 23 40 40 H 1.09007 * 109.58676 * 293.82448 * 27 15 14 41 41 H 1.08998 * 109.59142 * 173.39860 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0067 5 1 1.8863 2.3993 -1.2091 6 1 1.8964 2.3936 1.2158 7 6 2.0102 -1.2021 -0.0058 8 1 3.0902 -1.2021 -0.0103 9 7 1.3256 -2.3881 -0.0058 10 6 2.0581 -3.6567 -0.0113 11 1 2.9717 -3.5519 0.5738 12 6 1.1835 -4.7542 0.5993 13 6 1.9598 -6.0728 0.6239 14 6 2.3143 -6.4790 -0.8100 15 7 3.0309 -5.3688 -1.4525 16 6 4.2314 -5.5697 -2.0312 17 8 4.7833 -4.6593 -2.6179 18 6 4.8767 -6.8969 -1.9526 19 7 4.1468 -8.0000 -2.0734 20 6 4.6819 -9.2014 -2.0089 21 6 6.0395 -9.3833 -1.8116 22 6 6.8584 -8.2699 -1.6776 23 8 8.1752 -8.0839 -1.4813 24 6 8.4698 -6.7734 -1.4217 25 6 7.3549 -6.0407 -1.5762 26 6 6.2614 -6.9943 -1.7562 27 6 2.4137 -4.0355 -1.4525 28 1 -0.4850 0.8400 0.0040 29 1 0.3555 -2.3880 -0.0014 30 1 0.9087 -4.4756 1.6166 31 1 0.2813 -4.8753 -0.0003 32 1 2.8747 -5.9457 1.2027 33 1 1.3449 -6.8486 1.0802 34 1 2.9511 -7.3635 -0.7925 35 1 1.4014 -6.6945 -1.3651 36 1 4.0447 -10.0673 -2.1128 37 1 6.4567 -10.3783 -1.7624 38 1 9.4597 -6.3687 -1.2712 39 1 7.2817 -4.9632 -1.5739 40 1 1.5088 -4.0517 -2.0600 41 1 3.1160 -3.3076 -1.8589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999777339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:01 Heat of formation + Delta-G solvation = 34.461356 kcal Electronic energy + Delta-G solvation = -26084.074719 eV Core-core repulsion = 22352.420491 eV Total energy + Delta-G solvation = -3731.654228 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.98006 -40.29784 -38.78855 -37.24753 -34.46683 -33.22451 -32.52592 -31.86629 -31.11092 -30.12395 -28.21292 -25.96135 -24.27230 -23.96297 -23.35071 -22.21854 -21.81494 -20.38386 -19.18679 -18.22401 -17.80998 -17.06879 -16.84570 -16.58888 -15.94541 -15.61760 -15.21038 -14.84688 -14.33085 -14.22911 -14.09272 -13.69467 -13.52610 -13.40870 -13.29720 -13.12312 -12.61570 -12.41169 -12.21671 -12.08262 -11.33450 -11.00404 -10.83201 -10.70926 -10.65093 -10.56800 -10.25440 -10.16040 -9.81748 -9.77549 -9.71172 -9.40833 -9.06532 -8.66690 -8.30090 -6.99006 -5.77924 -3.07658 0.14411 0.85941 1.99690 2.28884 2.67751 3.05684 3.44809 3.45942 3.51203 3.53306 3.96739 4.07680 4.25463 4.54855 4.59717 4.69709 4.87844 4.97139 5.12314 5.22655 5.34727 5.38897 5.42573 5.50130 5.55523 5.67978 5.80302 5.83825 5.94939 5.98242 6.08085 6.14062 6.21070 6.26316 6.39801 6.51323 6.61827 6.76550 6.84047 7.02451 7.42163 7.63802 7.72607 8.28256 8.40416 9.52130 10.06284 10.41779 11.44436 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.003490 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.322929 B = 8021.620555 C = 9078.611987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.132 4.132 14 C 0.098 3.902 15 N -0.583 5.583 16 C 0.565 3.435 17 O -0.529 6.529 18 C 0.153 3.847 19 N -0.458 5.458 20 C 0.107 3.893 21 C -0.143 4.143 22 C 0.083 3.917 23 O -0.189 6.189 24 C 0.005 3.995 25 C -0.177 4.177 26 C -0.140 4.140 27 C 0.091 3.909 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.175 0.825 37 H 0.148 0.852 38 H 0.217 0.783 39 H 0.170 0.830 40 H 0.066 0.934 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.219 -22.475 -1.311 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.171 4.171 14 C -0.025 4.025 15 N -0.315 5.315 16 C 0.350 3.650 17 O -0.405 6.405 18 C 0.010 3.990 19 N -0.172 5.172 20 C -0.047 4.047 21 C -0.164 4.164 22 C 0.028 3.972 23 O -0.089 6.089 24 C -0.059 4.059 25 C -0.197 4.197 26 C -0.144 4.144 27 C -0.033 4.033 28 H 0.065 0.935 29 H 0.220 0.780 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.192 0.808 37 H 0.165 0.835 38 H 0.233 0.767 39 H 0.188 0.812 40 H 0.084 0.916 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.915 -21.954 -1.716 25.038 hybrid contribution 0.953 0.963 0.063 1.356 sum 12.867 -20.991 -1.654 24.677 Atomic orbital electron populations 1.69669 1.05121 1.25648 1.57530 1.24742 0.95509 0.97735 1.02683 0.86124 0.78937 0.84031 0.77172 1.20451 1.21775 1.21856 1.19320 0.91126 0.83974 1.42895 0.90998 1.42386 1.05842 0.99565 1.88036 1.20485 0.94982 0.86511 0.92243 0.93177 1.21835 0.98754 0.94144 1.01737 1.21935 1.00650 0.98119 0.96390 1.22166 0.97744 0.89771 0.92770 1.48150 1.17827 1.11508 1.53977 1.17737 0.81313 0.85937 0.79968 1.90812 1.63880 1.42812 1.42970 1.20813 0.88613 0.93429 0.96153 1.67890 1.38223 0.98004 1.13093 1.22678 0.91466 0.95084 0.95442 1.21145 0.93057 0.97242 1.04939 1.19697 0.82530 0.95250 0.99720 1.83971 1.22633 1.27559 1.74688 1.24236 1.00658 0.78978 1.02062 1.22659 0.89971 1.01149 1.05965 1.20616 0.94661 0.94011 1.05098 1.22890 0.97980 0.81153 1.01276 0.93508 0.78021 0.91479 0.91942 0.92013 0.91030 0.87903 0.91166 0.80758 0.83457 0.76698 0.81234 0.91619 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.72 -17.98 5.12 -53.31 -0.27 -18.25 16 10 C 0.17 3.42 2.92 -67.81 -0.20 3.22 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -2.06 5.35 -26.69 -0.14 -2.20 16 13 C -0.13 -1.73 6.08 -26.61 -0.16 -1.89 16 14 C 0.10 1.32 6.03 -3.71 -0.02 1.30 16 15 N -0.58 -9.81 2.97 -173.90 -0.52 -10.32 16 16 C 0.57 9.98 7.44 -12.36 -0.09 9.89 16 17 O -0.53 -10.94 16.01 5.32 0.09 -10.85 16 18 C 0.15 2.24 6.04 -82.80 -0.50 1.74 16 19 N -0.46 -5.60 7.27 -9.68 -0.07 -5.67 16 20 C 0.11 0.92 11.13 -17.56 -0.20 0.72 16 21 C -0.14 -1.20 10.13 -39.29 -0.40 -1.59 16 22 C 0.08 0.92 7.48 -38.29 -0.29 0.63 16 23 O -0.19 -1.93 10.57 4.97 0.05 -1.88 16 24 C 0.00 0.04 11.97 29.35 0.35 0.39 16 25 C -0.18 -2.11 10.69 -37.77 -0.40 -2.52 16 26 C -0.14 -1.88 6.12 -104.90 -0.64 -2.53 16 27 C 0.09 1.79 6.01 -3.71 -0.02 1.76 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.39 10.15 7.80 -40.82 -0.32 9.83 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.28 4.56 -51.93 -0.24 1.04 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 2.05 7.02 -51.93 -0.36 1.68 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -34.13 343.39 -7.92 -42.05 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.11 Total: 7.86 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.96 Total: 1.60 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.14 Total: -61.61 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.14 Total: -12.73 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.13 -7.92 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999777339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.508 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds